mRNA_H-paniculata_contig62710.14033.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL) HSP 1 Score: 105 bits (262), Expect = 5.010e-24 Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 1
Query: 40 LKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
+KGPEAE W+A M++E +L ENGTW+ D LP GRKA+ KWI KRKL EDG+V RY ARL+AQGF+Q G D E V R T R + ++A++ + DV AYL
Sbjct: 1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYL 111
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: Q7XLA3_ORYSJ (OSJNBb0115I09.9 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q7XLA3_ORYSJ) HSP 1 Score: 103 bits (258), Expect = 1.810e-23 Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 1
Query: 19 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
PKS +EA P+A+ W+ T+ E +++ NGTWE + P G K + KW+ K+KL+ DG++ +Y ARL+A+G++Q EGGD F+T VAR++T+R + SLAA H MDV +L
Sbjct: 133 PKSISEAYASPDADYWKETVRSEMDSIIANGTWEVTE---RPYGCKPMGCKWVFKKKLRPDGTIEKYKARLIAKGYTQKEGGDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFL 250
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A1Y1IGG8_KLENI (Integrase catalytic domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IGG8_KLENI) HSP 1 Score: 103 bits (257), Expect = 3.420e-23 Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 1
Query: 16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
EPKS EAL PEAE WR M+EE+G+L EN TWE +P P+G K I KW K K E+G + RY ARL+ +GF Q +G D E V+R TLRT+ ++AA D E + +D+ A+L
Sbjct: 560 EPKSLGEALNSPEAELWRKAMDEEFGSLQENQTWELAEP---PSGVKPIPCKWAFKLKRDENGQINRYKARLVIKGFRQKKGVDFEEVFAPVSRHVTLRTLLAVAAVEDLEVDQLDIKTAFL 678
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL) HSP 1 Score: 100 bits (248), Expect = 4.810e-23 Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 1
Query: 16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
EP S EA++ E++ W+A M+EE+ +L+ENGTW + LPAGRKAI +KW+ K+K G+V ++ ARL+AQGFSQ G D VA +TLRT+ S+A + + +DV AYL
Sbjct: 8 EPSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFGVDYDSVFAPVAAQTTLRTLLSVAGKKKMKVRHLDVKSAYL 126
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: Q6L4Z3_ORYSJ (Putative ubiquitin carrier protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6L4Z3_ORYSJ) HSP 1 Score: 101 bits (251), Expect = 2.190e-22 Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 1
Query: 19 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
PKS +EA P+A+ W+ + E +++ NGTWE + P G K + KW+ K+KLK DG++ +Y ARL+A+G++Q EG D F+T VAR++T+R + SLAA H MDV ++L
Sbjct: 667 PKSISEAYTSPDADYWKEAVRSEMDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLKPDGTIEKYKARLIAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTSFL 784
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A4S4M1D7_9APHY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1D7_9APHY) HSP 1 Score: 101 bits (251), Expect = 2.210e-22 Identity = 54/122 (44.26%), Postives = 80/122 (65.57%), Query Frame = 1
Query: 16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
EP++ AEA++ P+A+KW ++E + +ENGTWE +LP GRKAI ++W+ + K DGS+ RY ARL+AQGF+Q G + ET + + +TLRT+ ++AA D E E +D AYL
Sbjct: 669 EPRTFAEAMRRPDADKWYQAAQDEIKSHLENGTWEL---AQLPEGRKAIGSRWVFRIKYNADGSIERYKARLVAQGFAQRPGLEYDETFASTLKWATLRTILAIAAIEDMEIECIDFSTAYL 787
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI) HSP 1 Score: 101 bits (251), Expect = 2.230e-22 Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 1
Query: 16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
EPK+ EA + P+ W +++E +L ENGTW ED LP GR+A+ +KW+ K KLK DG+V +Y ARL+AQGF+Q G D ET V + +TLR + +LAA+ + + MDV AYL
Sbjct: 829 EPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLED---LPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYL 947
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 94.7 bits (234), Expect = 2.980e-22 Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFE 348
+P++ EAL P+AEKW+ MEEE L N TW D P GRK ++ KW+ KRKL +DG V RY ARL+A+G++QVEG D ET V + ++RT+ + + E D++
Sbjct: 30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQ 137
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A177USG4_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177USG4_9BASI) HSP 1 Score: 99.4 bits (246), Expect = 1.020e-21 Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 1
Query: 16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
EP + A+AL + ++W+A+M++E+ +L+E GTWE P P GRK I +W+ K K +G R +RL+AQG++QVEG D ET VAR+S LR + +LA + D + GMDV AYL
Sbjct: 307 EPSTFAQALSREDKDEWKASMDDEYKSLIEMGTWELCHP---PPGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGYTQVEGVDYDETFAPVARLSALRMMVTLAVQFDLKLHGMDVKTAYL 425
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A1W7R6H7_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6H7_AEDAL) HSP 1 Score: 99.4 bits (246), Expect = 1.050e-21 Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 1
Query: 16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
EP+S EA++GPE E W++ ++EE + EN TW D LP GRK + KWI KRKL E G+VARY ARL+AQGF+Q G D E V +M T RT+ S+A + + + DV AYL
Sbjct: 787 EPRSFKEAVEGPECELWKSAIKEELMSHQENKTW---DLVPLPPGRKTVGCKWIFKRKLDEHGNVARYKARLVAQGFTQKFGTDYDEVYAPVVKMVTFRTLLSVATKRNMLIKHADVKTAYL 905 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig62710.14033.1 >prot_H-paniculata_contig62710.14033.1 ID=prot_H-paniculata_contig62710.14033.1|Name=mRNA_H-paniculata_contig62710.14033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp AVSKREPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGback to top mRNA from alignment at H-paniculata_contig62710:174..554- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig62710.14033.1 ID=mRNA_H-paniculata_contig62710.14033.1|Name=mRNA_H-paniculata_contig62710.14033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig62710:174..554- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig62710:174..554- >mRNA_H-paniculata_contig62710.14033.1 ID=mRNA_H-paniculata_contig62710.14033.1|Name=mRNA_H-paniculata_contig62710.14033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig62710:174..554- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |