mRNA_H-paniculata_contig62710.14033.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62710.14033.1
Unique NamemRNA_H-paniculata_contig62710.14033.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 105 bits (262), Expect = 5.010e-24
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 1
Query:   40 LKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
            +KGPEAE W+A M++E  +L ENGTW+  D   LP GRKA+  KWI KRKL EDG+V RY ARL+AQGF+Q  G D  E    V R  T R + ++A++     +  DV  AYL
Sbjct:    1 MKGPEAELWKAAMDDEMTSLRENGTWQLTD---LPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGFTQKFGTDYDEVFAPVVRQVTFRVLLTVASQRGMVVKHADVKTAYL 111          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: Q7XLA3_ORYSJ (OSJNBb0115I09.9 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q7XLA3_ORYSJ)

HSP 1 Score: 103 bits (258), Expect = 1.810e-23
Identity = 52/121 (42.98%), Postives = 78/121 (64.46%), Query Frame = 1
Query:   19 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
            PKS +EA   P+A+ W+ T+  E  +++ NGTWE  +    P G K +  KW+ K+KL+ DG++ +Y ARL+A+G++Q EGGD F+T   VAR++T+R + SLAA H      MDV   +L
Sbjct:  133 PKSISEAYASPDADYWKETVRSEMDSIIANGTWEVTE---RPYGCKPMGCKWVFKKKLRPDGTIEKYKARLIAKGYTQKEGGDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTTFL 250          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A1Y1IGG8_KLENI (Integrase catalytic domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IGG8_KLENI)

HSP 1 Score: 103 bits (257), Expect = 3.420e-23
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
            EPKS  EAL  PEAE WR  M+EE+G+L EN TWE  +P   P+G K I  KW  K K  E+G + RY ARL+ +GF Q +G D  E    V+R  TLRT+ ++AA  D E + +D+  A+L
Sbjct:  560 EPKSLGEALNSPEAELWRKAMDEEFGSLQENQTWELAEP---PSGVKPIPCKWAFKLKRDENGQINRYKARLVIKGFRQKKGVDFEEVFAPVSRHVTLRTLLAVAAVEDLEVDQLDIKTAFL 678          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL)

HSP 1 Score: 100 bits (248), Expect = 4.810e-23
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
            EP S  EA++  E++ W+A M+EE+ +L+ENGTW   +   LPAGRKAI +KW+ K+K    G+V ++ ARL+AQGFSQ  G D       VA  +TLRT+ S+A +   +   +DV  AYL
Sbjct:    8 EPSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFGVDYDSVFAPVAAQTTLRTLLSVAGKKKMKVRHLDVKSAYL 126          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: Q6L4Z3_ORYSJ (Putative ubiquitin carrier protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6L4Z3_ORYSJ)

HSP 1 Score: 101 bits (251), Expect = 2.190e-22
Identity = 51/121 (42.15%), Postives = 77/121 (63.64%), Query Frame = 1
Query:   19 PKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
            PKS +EA   P+A+ W+  +  E  +++ NGTWE  +    P G K +  KW+ K+KLK DG++ +Y ARL+A+G++Q EG D F+T   VAR++T+R + SLAA H      MDV  ++L
Sbjct:  667 PKSISEAYTSPDADYWKEAVRSEMDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLKPDGTIEKYKARLIAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTSFL 784          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A4S4M1D7_9APHY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1D7_9APHY)

HSP 1 Score: 101 bits (251), Expect = 2.210e-22
Identity = 54/122 (44.26%), Postives = 80/122 (65.57%), Query Frame = 1
Query:   16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
            EP++ AEA++ P+A+KW    ++E  + +ENGTWE     +LP GRKAI ++W+ + K   DGS+ RY ARL+AQGF+Q  G +  ET  +  + +TLRT+ ++AA  D E E +D   AYL
Sbjct:  669 EPRTFAEAMRRPDADKWYQAAQDEIKSHLENGTWEL---AQLPEGRKAIGSRWVFRIKYNADGSIERYKARLVAQGFAQRPGLEYDETFASTLKWATLRTILAIAAIEDMEIECIDFSTAYL 787          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 101 bits (251), Expect = 2.230e-22
Identity = 56/122 (45.90%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
            EPK+  EA + P+   W   +++E  +L ENGTW  ED   LP GR+A+ +KW+ K KLK DG+V +Y ARL+AQGF+Q  G D  ET   V + +TLR + +LAA+  + +  MDV  AYL
Sbjct:  829 EPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLED---LPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYL 947          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 94.7 bits (234), Expect = 2.980e-22
Identity = 50/111 (45.05%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFE 348
            +P++  EAL  P+AEKW+  MEEE   L  N TW   D    P GRK ++ KW+ KRKL +DG V RY ARL+A+G++QVEG D  ET   V +  ++RT+ + + E D++
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETW---DIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQ 137          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A177USG4_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia caries TaxID=13290 RepID=A0A177USG4_9BASI)

HSP 1 Score: 99.4 bits (246), Expect = 1.020e-21
Identity = 54/122 (44.26%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
            EP + A+AL   + ++W+A+M++E+ +L+E GTWE   P   P GRK I  +W+ K K   +G   R  +RL+AQG++QVEG D  ET   VAR+S LR + +LA + D +  GMDV  AYL
Sbjct:  307 EPSTFAQALSREDKDEWKASMDDEYKSLIEMGTWELCHP---PPGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGYTQVEGVDYDETFAPVARLSALRMMVTLAVQFDLKLHGMDVKTAYL 425          
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Match: A0A1W7R6H7_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6H7_AEDAL)

HSP 1 Score: 99.4 bits (246), Expect = 1.050e-21
Identity = 58/122 (47.54%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   16 EPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAGRKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARMSTLRTVFSLAAEHDFESEGMDVDEAYL 381
            EP+S  EA++GPE E W++ ++EE  +  EN TW   D   LP GRK +  KWI KRKL E G+VARY ARL+AQGF+Q  G D  E    V +M T RT+ S+A + +   +  DV  AYL
Sbjct:  787 EPRSFKEAVEGPECELWKSAIKEELMSHQENKTW---DLVPLPPGRKTVGCKWIFKRKLDEHGNVARYKARLVAQGFTQKFGTDYDEVYAPVVKMVTFRTLLSVATKRNMLIKHADVKTAYL 905          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62710.14033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GIT5_AEDAL5.010e-2450.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q7XLA3_ORYSJ1.810e-2342.98OSJNBb0115I09.9 protein n=2 Tax=Oryza sativa TaxID... [more]
A0A1Y1IGG8_KLENI3.420e-2347.54Integrase catalytic domain-containing protein n=1 ... [more]
A0A182GDL1_AEDAL4.810e-2345.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q6L4Z3_ORYSJ2.190e-2242.15Putative ubiquitin carrier protein n=1 Tax=Oryza s... [more]
A0A4S4M1D7_9APHY2.210e-2244.26Integrase catalytic domain-containing protein (Fra... [more]
A0A5C3E5T1_9BASI2.230e-2245.90Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]
UPI0015A81C6A2.980e-2245.05uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A177USG4_9BASI1.020e-2144.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1W7R6H7_AEDAL1.050e-2147.54Putative pol polyprotein (Fragment) n=1 Tax=Aedes ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62710contigH-paniculata_contig62710:174..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score104.0
Seed ortholog evalue5.3e-20
Seed eggNOG ortholog65672.G4T9D2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930716.7403412-CDS-H-paniculata_contig62710:173..5541622930716.7403412-CDS-H-paniculata_contig62710:173..554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62710 174..554 -
1691481420.3060977-CDS-H-paniculata_contig62710:173..5541691481420.3060977-CDS-H-paniculata_contig62710:173..554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62710 174..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62710.14033.1prot_H-paniculata_contig62710.14033.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62710 174..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62710.14033.1

>prot_H-paniculata_contig62710.14033.1 ID=prot_H-paniculata_contig62710.14033.1|Name=mRNA_H-paniculata_contig62710.14033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
AVSKREPKSAAEALKGPEAEKWRATMEEEWGALVENGTWESEDPGRLPAG
RKAIRTKWISKRKLKEDGSVARYTARLMAQGFSQVEGGDSFETGVAVARM
STLRTVFSLAAEHDFESEGMDVDEAYL
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mRNA from alignment at H-paniculata_contig62710:174..554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62710.14033.1 ID=mRNA_H-paniculata_contig62710.14033.1|Name=mRNA_H-paniculata_contig62710.14033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=381bp|location=Sequence derived from alignment at H-paniculata_contig62710:174..554- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTATCTAAGCGGGAGCCGAAATCCGCGGCAGAAGCATTAAAGGGTCC AGAGGCGGAAAAATGGCGCGCGACAATGGAGGAAGAATGGGGGGCGTTGG TGGAGAATGGGACATGGGAAAGCGAAGACCCGGGGAGGTTACCCGCAGGG CGGAAGGCGATTCGTACGAAATGGATTTCCAAGCGCAAACTGAAAGAGGA CGGCAGCGTGGCACGCTACACAGCGCGACTGATGGCTCAAGGTTTTTCAC AGGTGGAGGGTGGAGATTCCTTTGAAACCGGTGTCGCCGTAGCTCGCATG TCGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTCGAATC AGAAGGCATGGACGTGGATGAGGCGTATTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig62710:174..554-

>mRNA_H-paniculata_contig62710.14033.1 ID=mRNA_H-paniculata_contig62710.14033.1|Name=mRNA_H-paniculata_contig62710.14033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig62710:174..554- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTATCTAAGCGGGAGCCGAAATCCGCGGCAGAAGCATTAAAGGGTCC
AGAGGCGGAAAAATGGCGCGCGACAATGGAGGAAGAATGGGGGGCGTTGG
TGGAGAATGGGACATGGGAAAGCGAAGACCCGGGGAGGTTACCCGCAGGG
CGGAAGGCGATTCGTACGAAATGGATTTCCAAGCGCAAACTGAAAGAGGA
CGGCAGCGTGGCACGCTACACAGCGCGACTGATGGCTCAAGGTTTTTCAC
AGGTGGAGGGTGGAGATTCCTTTGAAACCGGTGTCGCCGTAGCTCGCATG
TCGACGTTACGTACTGTTTTTAGCCTGGCCGCCGAACATGATTTCGAATC
AGAAGGCATGGACGTGGATGAGGCGTATTTGGCGGTATCTAAGCGGGAGC
CGAAATCCGCGGCAGAAGCATTAAAGGGTCCAGAGGCGGAAAAATGGCGC
GCGACAATGGAGGAAGAATGGGGGGCGTTGGTGGAGAATGGGACATGGGA
AAGCGAAGACCCGGGGAGGTTACCCGCAGGGCGGAAGGCGATTCGTACGA
AATGGATTTCCAAGCGCAAACTGAAAGAGGACGGCAGCGTGGCACGCTAC
ACAGCGCGACTGATGGCTCAAGGTTTTTCACAGGTGGAGGGTGGAGATTC
CTTTGAAACCGGTGTCGCCGTAGCTCGCATGTCGACGTTACGTACTGTTT
TTAGCCTGGCCGCCGAACATGATTTCGAATCAGAAGGCATGGACGTGGAT
GAGGCGTATTTG
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