mRNA_H-paniculata_contig6270.14029.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6270.14029.1
Unique NamemRNA_H-paniculata_contig6270.14029.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6270.14029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6270contigH-paniculata_contig6270:2659..6198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size543
Cds size543
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930716.4910426-CDS-H-paniculata_contig6270:2658..28691622930716.4910426-CDS-H-paniculata_contig6270:2658..2869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6270 2659..2869 +
1691481420.2431288-CDS-H-paniculata_contig6270:2658..28691691481420.2431288-CDS-H-paniculata_contig6270:2658..2869Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6270 2659..2869 +
1622930716.5175755-CDS-H-paniculata_contig6270:5866..61981622930716.5175755-CDS-H-paniculata_contig6270:5866..6198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6270 5867..6198 +
1691481420.2538242-CDS-H-paniculata_contig6270:5866..61981691481420.2538242-CDS-H-paniculata_contig6270:5866..6198Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6270 5867..6198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6270.14029.1prot_H-paniculata_contig6270.14029.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6270 2659..6198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6270.14029.1

>prot_H-paniculata_contig6270.14029.1 ID=prot_H-paniculata_contig6270.14029.1|Name=mRNA_H-paniculata_contig6270.14029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
MSAAARNVIGLRSDHLGAPAGEQAGARGGGGDGLAGAGASVSTGVNVGGS
PYDVGGGLRYGGPGTSPYGGGTSSNDGMSASDRTLNNQSGGIFEDDDDEG
WVSEGELDDPPMSDSDANQPWDERPADQNIGRDLPADELLRSGELNSEAQ
QGQMEGAERRNGELRPEAFGEAEEGPGLAGE
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mRNA from alignment at H-paniculata_contig6270:2659..6198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6270.14029.1 ID=mRNA_H-paniculata_contig6270.14029.1|Name=mRNA_H-paniculata_contig6270.14029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3540bp|location=Sequence derived from alignment at H-paniculata_contig6270:2659..6198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGCCGCAGCGAGAAATGTCATTGGATTGCGTAGCGATCATCTGGG
GGCTCCTGCGGGGGAGCAGGCGGGCGCCAGGGGTGGTGGTGGAGATGGGC
TTGCGGGTGCGGGTGCGAGTGTGAGTACGGGTGTGAATGTCGGAGGATCT
CCGTATGATGTTGGAGGAGGATTGCGATATGGAGGGCCGGGGACCTCGCC
ATATGGAGGAGGTACGTGAACTGTTGACTCTTGAGTTTTTCTTGTTTAGG
AGAAGGCGGGGCCGTATCGCGCGGACGTTTGACTAGAGGGGGGTCCGGTT
GGCATGTGTACTTGTGTTTTTCGCCGTTTTCTGCACGTGCTGTTCTCGTC
CGCTAATAAAGTCGTGTCTTGTTTTGTCATCGCGGTATGGCTTAGCGCTG
CTTCTTGCGTATTTTCAATCGGTCGTGTCACGAGAGCATGCGGTCATGTG
CAAGGTTGCTGATCGGTGGAAACAGCAGGTAAATACGCAAGAAGTAAGAG
CTGGGGCACGGCTACACTATTGCTCTCGGTGTAGTATCACGATACCCACG
TGTATGTTGAACTAAACTGCTCTCAGTGTTTTCCCAACGTACCCATATAT
ATATATAGGTATGCTTTGACCCAAAAATAATTGCCTAGTGCGCTCTCGCA
ACAGTCTGCTACACCCGCTATGTGGCACGTACCCGTTCAGATTATATTGG
TACACGTACACCCTACAACCCACAAATAGCTGCTCACAACAAACGTGATA
TTAGCATAGAGCATGATAGCACTTGCTTGCGTTCAGGATAAATGTAACAC
GCTGAAATAATTAGGTTCAGTGTACCGTGGAGCGCTGTCATAATGCCCAG
GGGGTGGGCCTTAAAAATTAGCAAAAAAAAATTAAGCACATGGCGTCAAA
GCTGCCCAAAAAATATGGTAATATTACTTTGGGGGTTTCGGGGTGAGAAA
GGTTTCTCAAAGGGTTCGCATGGCACATGAAGAAAAATGCAACAAAACAC
ATGAATGCTCAATTTTGTTGTACCCTGCGCTGAGCGCTCTTGTGATCATG
TGATGCATCCATGCAAACCGCATAGTTTAATCTTTGACATGCCCGTATCG
CGCCGCGGTCGGCGTCGTTTAGTCTCATTTTTTTGCGAAAGATCGTTTGC
CCTGGGGTATGTCTTTTTTTCCGTCTGGTTTGATACCCCGCCCCGGCGCG
ATTGTGTTTTACCCACCGGGGCGTTTATGATTTGACGAGGCGTTACGGCA
GTGCTTTGCGGTACAGAAAGACATTCTGAGACGTGCAGCTAGGAGTACTG
TCTCTACAATATCACTAACTGGAGTGAAGTACAAAGTTGAAAGCTGTTCT
GAAACGACGTCGACCACGACCACGATCTTATGTACCGTATTGAAAATCTA
TGGATACTTATCATCTCCAGTAAACATAAAAGCATGGGGTACGAGCAAAA
GGCTGAGGGTCTACTTGTAGACTGCTACTAACTCCATCGACCTCTCTGAT
CTTACGTGCCGTTAAGCGAAAAAATGTGGCCGAACCGTGGGAACATTGGG
CAAGAGGGAAAGAGTGAGAAGAAAAAACAAGAAAAAAAAAACGGCTACAG
AGGCATCAAACGTGCAGGTGCCCGATGCAGGCGCTGAAAATAATGGTGGA
GGTGCATTTCTGGTCGCGCACAGCTGTAAACAACAGATTTTAAGGCCATC
TATTGAAGACTGGCTATTTTGTTTTCAGGTTTTTGTTGGTTGAAGTGTGA
TACTACCGGTCGTACTTTTCCTCTGTTTCTTTTTACGTTGCGCGTTTGCC
AATATCGAGCGCTATTTAAGCGGCCCCAATAAGTTGGGGTTATTTGAGAA
CCCTTTGACGCTGAGGGGTCTGTGTCGTAACGTGTTGTGACACACGAAAA
TGGACGGTCGGGATTACTGTTCGATACAAAGCACAACCCTCGAGGACGTG
AGAGTGGGACTTGAGGATGTAAGCGATTACTGTTACGTTTATGTTAGCAG
TCATGTTGCCCCTGTCACGGCTTAGGTCTAGATTGCGGCTTGCTGTTGTT
TGTCCTGGTACCATAGCACGCCGTACACGCCAACTTCCCCCACTAGTTTT
TCGTCATCCTGATTATCTACAGTAGCAGAGCACGTACAGACCAATGTCGC
ATAGTGCTGCAGTATTTCAACGCACGACTCCCTGTTTGTCTCTACTGACT
GTATTCTGTCGAGTCCATGTCCAACTGGCTGGAGGCTTTGCTGGCTGCCA
TCGTTCAATCGAGCGGATCTTTGTACTGCTTTGTCAGCTCTATAAATGTA
TCCAGCGCTGCAAGAACCAAATTAAATGAGAATGGCTAGGTTAATGCCTG
CACACCCGTGAAACTTTAGGCTGTGTCAACAAATGTGGTACCGACCTGTA
CAATCGTTTTCGCATCCGGAACTGTGAGCTGTGATGTTGTTTTCTCAGGA
GCTGAAGGGTCAAGAGTAAGATTGGCCTTACGGTTAGGGAGCATAACGCT
GCACGCGTATTCGCGAAGATGAACAGATAGCAATCAATCAAAGATTCAGT
ACTGGGTAAATGGCAAAAAGTCCTTGCCGTAAACCAGTGTATTGAGTCTG
ACGCAACTGATAAAATGGTTTTGGTGTAGATTTGGTATGTAGGAGGATGT
ATATATCCGCTGTATATGTTTTTTTCTGGGTTGCACCCAGCACGCATGCT
CCAGCAATTTCTAGCGAGCGTTTGTTGATCCATCACAACCCTGCCAGCGT
AATTTGCCACACTTTCCCGTCCGATATCACAGGTGTTGTCGCCCTCGCTC
ATCGTACGTTGACAGTTGCCAAGTTTAGGAAAAATAATTGCCTCGCTGTT
GACCTTGTGGCTGCTCCTTCTGTTGGTATTCTTTGTACAGACTTGAAAAT
ATTGAGGTCGTTTTTGAGCTCTTTGAGATCCCACCGTCATTTCAAGGACG
TGAATGAAGTACGGGGAAAAAGTTAACAACAAATGACTAACCTGTCGAAA
GAAACGAGGAAATACGACCATGGGTACCCTGATTTTCCACAATCTCGACT
CCCCGGCAGGGGCTAAGCCGAAGGTGGAAATTGGCTGAAACAGGAAGCGT
CATGCACACACACTGTCTGCAAGCAAATGTCTAAAACATATGGTGGCGTT
TTTTTTTTGTATGTTGTTTTCCCGAATCGTACGCTCTCAACAACACGAAT
ACCCACAGGCACTAGCAGTAACGACGGAATGTCGGCTAGCGACAGAACAC
TAAATAACCAATCAGGAGGCATCTTTGAAGACGATGATGACGAGGGATGG
GTTTCTGAAGGGGAGCTGGACGACCCACCGATGTCCGACTCGGATGCCAA
TCAGCCTTGGGACGAGCGTCCAGCGGACCAAAACATTGGCAGGGACTTGC
CGGCTGATGAATTGTTACGCTCGGGAGAACTCAATAGCGAGGCACAGCAG
GGACAAATGGAGGGTGCTGAAAGACGCAATGGAGAATTGAGGCCCGAAGC
CTTCGGAGAGGCAGAAGAAGGACCAGGCTTGGCAGGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6270:2659..6198+

>mRNA_H-paniculata_contig6270.14029.1 ID=mRNA_H-paniculata_contig6270.14029.1|Name=mRNA_H-paniculata_contig6270.14029.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig6270:2659..6198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGCCGCAGCGAGAAATGTCATTGGATTGCGTAGCGATCATCTGGG
GGCTCCTGCGGGGGAGCAGGCGGGCGCCAGGGGTGGTGGTGGAGATGGGC
TTGCGGGTGCGGGTGCGAGTGTGAGTACGGGTGTGAATGTCGGAGGATCT
CCGTATGATGTTGGAGGAGGATTGCGATATGGAGGGCCGGGGACCTCGCC
ATATGGAGGAGATGTCCGCCGCAGCGAGAAATGTCATTGGATTGCGTAGC
GATCATCTGGGGGCTCCTGCGGGGGAGCAGGCGGGCGCCAGGGGTGGTGG
TGGAGATGGGCTTGCGGGTGCGGGTGCGAGTGTGAGTACGGGTGTGAATG
TCGGAGGATCTCCGTATGATGTTGGAGGAGGATTGCGATATGGAGGGCCG
GGGACCTCGCCATATGGAGGAGGCACTAGCAGTAACGACGGAATGTCGGC
TAGCGACAGAACACTAAATAACCAATCAGGAGGCATCTTTGAAGACGATG
ATGACGAGGGATGGGTTTCTGAAGGGGAGCTGGACGACCCACCGATGTCC
GACTCGGATGCCAATCAGCCTTGGGACGAGCGTCCAGCGGACCAAAACAT
TGGCAGGGACTTGCCGGCTGATGAATTGTTACGCTCGGGAGAACTCAATA
GCGAGGCACAGCAGGGACAAATGGAGGGTGCTGAAAGACGCAATGGAGAA
TTGAGGCCCGAAGCCTTCGGAGAGGCAGAAGAAGGACCAGGCTTGGCAGG
AGAGGCACTAGCAGTAACGACGGAATGTCGGCTAGCGACAGAACACTAAA
TAACCAATCAGGAGGCATCTTTGAAGACGATGATGACGAGGGATGGGTTT
CTGAAGGGGAGCTGGACGACCCACCGATGTCCGACTCGGATGCCAATCAG
CCTTGGGACGAGCGTCCAGCGGACCAAAACATTGGCAGGGACTTGCCGGC
TGATGAATTGTTACGCTCGGGAGAACTCAATAGCGAGGCACAGCAGGGAC
AAATGGAGGGTGCTGAAAGACGCAATGGAGAATTGAGGCCCGAAGCCTTC
GGAGAGGCAGAAGAAGGACCAGGCTTGGCAGGAGAG
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