mRNA_H-paniculata_contig6265.14026.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig6265.14026.1
Unique Name	mRNA_H-paniculata_contig6265.14026.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: D8LJV2_ECTSI (WW domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJV2_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 4.220e-67
Identity = 153/351 (43.59%), Postives = 186/351 (52.99%), Query Frame = 2

Query:  410 LLRGAPCRHSTTVTG---------DDITRPGPAGAENDAAR---------FKPTDPNSLPRRLFNLLSTKKTKRTLCSARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYDHAYSLEDREELM--------------------------AEHVDSELSDVYALDEDALFGGCIDFGLPSPEIMNLNAA-------------------------QGGKPTHSTMTKDRPA--KVPPMDPDLGDDNKGRWRASLAESGKVYYWHTVTNEATYENPEGVE-YVAATMP 1246
            LL  APCR  T+ T          DD  +        DA           +K +DP   P ++  + STK T   L SARMLQ CLNN E   WY+D K+S EFL K LWLSTNVWL+SRRLLREG  GKK+QELLFDELWRE  RQMRSI+V ++M++KYL +AQQHT  TL Q+DHAY+LE REE M                          AE+VD+EL+D+YA+D    F  CI+F    P    L AA                         +GG    +   +      KV   D   GD  +GRWRA LAESGKVYYWHTV+ E T++ P G E YV + MP
Sbjct:   53 LLPRAPCRQVTSTTTTQQRQVAEVDDRGQVSDERPAKDAVNSHELHEKWGWKTSDPLYWPYKIMGVFSTKNTN-ALSSARMLQTCLNNAECTEWYSDGKISNEFLPKLLWLSTNVWLMSRRLLREGERGKKVQELLFDELWRETKRQMRSIEVSEMMLKKYLAEAQQHTFITLVQFDHAYTLESREERMDVLTSALWRGVYMSDESIKEPHVRVLAEYVDAELADIYAVDASEFFAVCIEFA--PPPTAELKAAXXXXXXXXXXXXXXXXGTVAAAPGLEGGAADSTAAGRGGGIGEKVHHGDFGSGDGREGRWRACLAESGKVYYWHTVSREVTWDRPAGAEAYVPSVMP 400

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BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: A0A4D9CTH2_9STRA (WW domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTH2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.760e-23
Identity = 68/252 (26.98%), Postives = 115/252 (45.63%), Query Frame = 2

Query:  572 KRTLCSARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYDHAYSL--------------------------EDREELMAEHVDSELSDVYALDEDALFGGCIDFGLPSPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPDLGD------------DNKGRWRASLAESGKVYYWHTVTNEATYENP 1213
            KRT  S  +LQ+C++      +Y   ++S  F   H  L  +VW++ +RLL EG +GK ++E LFD LW E   ++R++ V++L +  Y+K+ Q ++ G    YD A ++                          ED   ++A +V  E   +  L ++A+F     +G P P        + G+  H          V   + ++GD            D +G WR + +E G++YYW+  T  +TYE P
Sbjct:    2 KRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLWDETTARIRALKVNELSVNSYVKEVQAYSFGACVSYDAALTVDGEEGRLDEMAGALYRYVYLRDEHLTEDHVLVLARYVLREFDSLKTLPKEAIFESRFKWG-PLPAWGRGEGGRAGRRMHPRFVTPDGKAVEEEEGEVGDGREXXXXXXXXEDKRGEWRTAFSEQGRMYYWNVRTRVSTYEKP 252

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BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: A0A0P1AAJ8_PLAHL (Ubiquinol cytochrome c reductase assembly protein CBP3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AAJ8_PLAHL)

HSP 1 Score: 100 bits (249), Expect = 2.840e-19
Identity = 69/236 (29.24%), Postives = 105/236 (44.49%), Query Frame = 2

Query:  587 SARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYDH-------------AYSLEDRE--------ELMAEHVDSELSDVYALDEDALFGGCIDFG-LPSPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPD---LGDDNKGRWRASLAESGKVYYWHTVTNEATYENPEG 1219
            S  + Q+C+N   R  +Y++  +S  F  +   L  +VWL+ RRL  EG  GK +QELLFD LW E + ++R +++ +L + KYL Q QQ    +   YD              A  L D E         +MAE++  EL ++  +D + +  G I +  LP   + N                       P D D   L     G WR++L   GK+YYW+  T  + +  P G
Sbjct:  117 STAVFQSCMNYTARPEYYSELGISKSFRAQQALLMVHVWLVHRRLALEGEQGKVMQELLFDRLWEETVVRIRYLNISELSVNKYLAQVQQIGFNSCIAYDKGLKNGPNVLQTAVAQHLLDNETPEGLRIASIMAEYMKRELKNLEKVDAEYIMKGTIPWSSLPQTHVKNR----------------------PEDDDDVVLIGQRFGNWRSALDNRGKLYYWNLTTRYSVWSRPTG 330

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BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: G4ZUD4_PHYSP (WW domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZUD4_PHYSP)

HSP 1 Score: 94.0 bits (232), Expect = 7.690e-18
Identity = 68/236 (28.81%), Postives = 105/236 (44.49%), Query Frame = 2

Query:  587 SARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYD----------------HAYSLEDREEL-----MAEHVDSELSDVYALDEDALFGGCIDFGLPSPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPD--LGDDNKGRWRASLAESGKVYYWHTVTNEATYENPEGVE 1225
            S  + Q+C+N   R  +Y    +   F  +   L  +VW++ RRL  EG+ GK +QEL+FD LW E + ++R  D+ +L + K+L Q QQ        YD                H    E  E L     +A+++  EL ++  +D   +  G I +  P PE            TH  +T      +P  D D  L     G WR++L   GK+YYW+  T  + ++ P G E
Sbjct:   15 STAVFQSCMNQTARPEYYRALGLPRSFRAQQALLMAHVWIVHRRLALEGDQGKIMQELMFDRLWEETVVRIRYQDISELTVNKHLAQVQQVCFNACIAYDQGLKNGPNFLQTAVAQHLLENETPEGLRIASIVADYMKRELKNLEKVDAKYIMEGTIPWS-PLPE------------THVKVTD-----IPGDDDDVVLIGQRFGNWRSALDNRGKLYYWNMTTRYSVWDRPTGDE 232

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BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: H3GH44_PHYRM (WW domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH44_PHYRM)

HSP 1 Score: 95.1 bits (235), Expect = 1.950e-17
Identity = 67/234 (28.63%), Postives = 103/234 (44.02%), Query Frame = 2

Query:  587 SARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYD----------------HAYSLEDRE-----ELMAEHVDSELSDVYALDEDALFGGCIDFGLPSPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPD--LGDDNKGRWRASLAESGKVYYWHTVTNEATYENPEG 1219
            S  + Q+C+N   +  +Y    +   F  +   L  +VWL+ RRL  EG  GK +QEL+FD LW E + ++R +D+ +L + K+L Q QQ        YD                H    E  E      ++AE++  EL ++  +D   +  G I +    PE            TH T T      +P  D D  L     G WR++L   GK+YYW+  T  + ++ P G
Sbjct:  119 STAVFQSCMNYTAKPEYYRALGLPRSFRAQQALLMMHVWLVHRRLALEGEQGKVMQELMFDRLWEETVVRIRYLDISELTVNKHLAQVQQMCFNACIAYDQGLKNGPNAFQTAVAQHLLENETPECLRLASILAEYMKRELKNLEKVDAKYIMEGTIPWST-LPE------------THVTATD-----IPESDEDVVLIGQRFGNWRSALDNRGKLYYWNLTTRFSVWDRPTG 334

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BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: A0A662YBL0_9STRA (WW domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YBL0_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.030e-17
Identity = 67/235 (28.51%), Postives = 104/235 (44.26%), Query Frame = 2

Query:  587 SARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYDH-------------AYSLEDRE--------ELMAEHVDSELSDVYALDEDALFGGCIDFGLPSPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPD---LGDDNKGRWRASLAESGKVYYWHTVTNEATYENPEG 1219
            S+ + Q+C+N   R  +Y    +   F  +   L  +VWL+ RRL  EG++GK IQEL+FD LW E + ++R  +V +L + K+L + QQ        YD              A  L D E          MAE++  EL ++  LD   +  G I +                    ST+ + +  + P  D D   L     G WR++L   GK+YYW+  T  + ++ P G
Sbjct:  123 SSAVFQSCMNQTARPEYYRALALPRSFRAQQALLMAHVWLVHRRLTLEGDEGKLIQELVFDRLWEETVVRIRYQNVSELTVNKHLAEVQQMCFNACIAYDQGLKNGPAVFQTAVAQHLLDNETPEGLRIASAMAEYMKRELKNLERLDGKYILKGVIPW--------------------STLPETQVKEAPADDDDDVVLIGQRFGNWRSALDNRGKLYYWNLTTRFSVWDRPTG 337

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BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: A0A3R7IPX6_9STRA (WW domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IPX6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 8.580e-17
Identity = 66/234 (28.21%), Postives = 103/234 (44.02%), Query Frame = 2

Query:  587 SARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYDHA--------------YSLEDREE-------LMAEHVDSELSDVYALDEDALFGGCIDFGLPSPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPD--LGDDNKGRWRASLAESGKVYYWHTVTNEATYENPEG 1219
            S  + Q+C+N   +  +Y    +   F  +   L  +VWL+ RRL  EG  GK IQEL+FD LW E + ++R  D+ ++ + K+L Q QQ        YD                Y LED          +MA+++  EL ++  +D   +  G I +G P P                 +T  +   +P  D D  L     G WR++L   GK+YYW+  T  + ++ P G
Sbjct:  122 STAVFQSCINLTAQPEFYHALGLPRSFRAQQALLMAHVWLVHRRLTLEGEQGKIIQELMFDRLWEETVVRIRYRDISEMTVNKHLAQVQQVCFNACIAYDKGLKSGSNMFQNAVAEYLLEDMTPEGLRVAGVMADYMKRELKNLERVDAKYIMEGTIPWG-PLP-----------------VTNVKKVDLPDDDDDVVLIGQRFGNWRSALDNRGKLYYWNLTTRYSVWDRPTG 337

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BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: A0A6A3N8Y6_9STRA (WW domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N8Y6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.640e-16
Identity = 68/240 (28.33%), Postives = 104/240 (43.33%), Query Frame = 2

Query:  587 SARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYD----------------HAYSLEDREEL-----MAEHVDSELSDVYALDEDALFGGCIDFGLPSPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPDLGDDNK--------GRWRASLAESGKVYYWHTVTNEATYENPEG 1219
            S    Q+C+N   R  +Y    +   F  +   L  +VWL+ RRL  EG  GK +QEL+FD LW E + ++R +D+ +L + K+L Q QQ        YD                H    E  E L     +A+++  EL ++  +D   +  G I +  P PE            TH  +T      +P      GDD+         G WR++L   GK+YYW+  T  + ++ P G
Sbjct:  123 STAAFQSCMNRTARPEFYRALGLPRSFRAQQALLMAHVWLLHRRLTLEGEQGKIMQELMFDRLWEETVVRIRYMDISELTVNKHLAQVQQVCFNACIAYDQGLKNGPNVLQTAVAQHLLENETPEGLRIASIVADYMKRELKNLEKVDAKYIMEGTIPWS-PLPE------------THVKVTD-----IP------GDDDNVVLIGQRFGNWRSALDNRGKLYYWNMTTRYSVWDRPTG 338

[Close]

BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: A0A8K1FRU2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRU2_PYTOL)

HSP 1 Score: 92.0 bits (227), Expect = 1.790e-16
Identity = 61/229 (26.64%), Postives = 101/229 (44.10%), Query Frame = 2

Query:  596 MLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYDHA--------------YSLEDREEL-------MAEHVDSELSDVYALDEDALFGGCIDFGLPSPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPDLGDDNKGRWRASLAESGKVYYWHTVTNEATYENPEG 1219
            + Q+C+N    + +Y   +++  F  +   L  +VW++ RRL  EG +GK +QELLFD LW E + ++R ++V +L + K+L + QQ     L  YD                + LED           + E++  E+ ++  LD   L  G I +G                  H   T   P      +  +  +  G WRA+L   GK+YYW+  T  + ++ P G
Sbjct:  108 VFQSCVNQSAHRGFYRALQLAPNFRGQQALLLAHVWMVHRRLALEGENGKVMQELLFDRLWEETVVRIRFMNVSELTVNKHLAEVQQLCFNALISYDRGLKDSPAAFQSTIAQHLLEDDSAAGQRIASKLVEYLKREMKNLDKLDAKYLLKGTIPWG-----------------PHVAATTSTPPLEHEDEYTIIGEQVGNWRAALDNRGKLYYWNLSTRYSVWDRPTG 319

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BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Match: M4C103_HYAAE (WW domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C103_HYAAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.770e-16
Identity = 68/238 (28.57%), Postives = 104/238 (43.70%), Query Frame = 2

Query:  587 SARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLISRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQHTLGTLCQYD----------------HAYSLEDREEL-----MAEHVDSELSDVYALDEDALFGGCIDFG-LPSPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPDLGD-----DNKGRWRASLAESGKVYYWHTVTNEATYENPEG 1219
            S  + Q+C+N   R  +Y    M   F ++   L  +VWL+ RRL  EG  GK +QEL+FD LW E + ++R   + +L + K+L + QQ        YD                H    E  E L     MA ++  EL ++  +D   +  G + +  LP+              TH+T   D+P      DPD  D        G WR++L   GK+YYW+  T  + ++ P G
Sbjct:  125 STAVFQSCMNCTARPEYYKALGMPCSFRSQQALLMVHVWLVHRRLAVEGEQGKVMQELMFDRLWEETVVRIRYYGISELAVNKHLAEVQQVCFNACIAYDKGLKNGPNVLQSAVAQHLLENETAEGLRIASIMATYMKQELKNLEKVDAKYIMEGTVPWSSLPA--------------THATAI-DKP------DPDDDDVVLIGQRFGNWRSALDNRGKLYYWNLTTRYSVWDRPTG 341

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig6265.14026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14


Match Name	E-value	Identity	Description
D8LJV2_ECTSI	4.220e-67	43.59	WW domain-containing protein n=2 Tax=Ectocarpus Ta...	[more]
A0A4D9CTH2_9STRA	3.760e-23	26.98	WW domain-containing protein n=1 Tax=Nannochlorops...	[more]
A0A0P1AAJ8_PLAHL	2.840e-19	29.24	Ubiquinol cytochrome c reductase assembly protein ...	[more]
G4ZUD4_PHYSP	7.690e-18	28.81	WW domain-containing protein n=1 Tax=Phytophthora ...	[more]
H3GH44_PHYRM	1.950e-17	28.63	WW domain-containing protein n=1 Tax=Phytophthora ...	[more]
A0A662YBL0_9STRA	2.030e-17	28.51	WW domain-containing protein n=2 Tax=Nothophytopht...	[more]
A0A3R7IPX6_9STRA	8.580e-17	28.21	WW domain-containing protein n=3 Tax=Phytophthora ...	[more]
A0A6A3N8Y6_9STRA	1.640e-16	28.33	WW domain-containing protein n=2 Tax=Phytophthora ...	[more]
A0A8K1FRU2_PYTOL	1.790e-16	26.64	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
M4C103_HYAAE	5.770e-16	28.57	WW domain-containing protein n=1 Tax=Hyaloperonosp...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig6265	contig	H-paniculata_contig6265:1064..8454 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	240.0
Seed ortholog evalue	1.7e-60
Seed eggNOG ortholog	2880.D8LJV2
KEGG ko	ko:K17662
Hectar predicted targeting category	mitochondrion
EggNOG free text desc.	Ubiquinol-cytochrome C chaperone
EggNOG OGs	2CZHZ@1,2SAFG@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03029
Exons	9
Model size	2214
Cds size	1029
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930715.7836018-UTR-H-paniculata_contig6265:1063..1322	1622930715.7836018-UTR-H-paniculata_contig6265:1063..1322	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig6265 1064..1322 +
1691481419.931702-UTR-H-paniculata_contig6265:1063..1322	1691481419.931702-UTR-H-paniculata_contig6265:1063..1322	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig6265 1064..1322 +
1622930715.9725413-UTR-H-paniculata_contig6265:7528..8454	1622930715.9725413-UTR-H-paniculata_contig6265:7528..8454	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig6265 7529..8454 +
1691481420.0283115-UTR-H-paniculata_contig6265:7528..8454	1691481420.0283115-UTR-H-paniculata_contig6265:7528..8454	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig6265 7529..8454 +

The following CDS feature(s) are a part of this mRNA:

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig6265.14026.1	prot_H-paniculata_contig6265.14026.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig6265 1323..7528 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig6265:1064..8454+
coding sequence from alignment at H-paniculata_contig6265:1064..8454+

protein sequence of mRNA_H-paniculata_contig6265.14026.1

>prot_H-paniculata_contig6265.14026.1 ID=prot_H-paniculata_contig6265.14026.1|Name=mRNA_H-paniculata_contig6265.14026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=343bp
MPRICRTRLRTTVATTARLSVRPVADRVSATREVLGLIRVQPVENSSERV
LLRGAPCRHSTTVTGDDITRPGPAGAENDAARFKPTDPNSLPRRLFNLLS
TKKTKRTLCSARMLQACLNNIERKTWYTDAKMSTEFLTKHLWLSTNVWLI
SRRLLREGNDGKKIQELLFDELWREAIRQMRSIDVDDLMIRKYLKQAQQH
TLGTLCQYDHAYSLEDREELMAEHVDSELSDVYALDEDALFGGCIDFGLP
SPEIMNLNAAQGGKPTHSTMTKDRPAKVPPMDPDLGDDNKGRWRASLAES
GKVYYWHTVTNEATYENPEGVEYVAATMPVQENAKGAKEAKA*

mRNA from alignment at H-paniculata_contig6265:1064..8454+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig6265.14026.1 ID=mRNA_H-paniculata_contig6265.14026.1|Name=mRNA_H-paniculata_contig6265.14026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7391bp|location=Sequence derived from alignment at H-paniculata_contig6265:1064..8454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACTTCACCTCTGTCTCACTTGCCAGATCATACTTGCATCAGTACTC
AGGCTTCCAGCCGAAGCAGGTCTGACTAGGTCAGGGTGTGGAAGTGAAAG
CACTACAGTTTCCAATAGTCTGTCGCAGCTGCATGTATAGACATGCATTC
TAGCCTTTACTAGTGCAATAGAACAGTAGAGACGCATATACACAACAGCA
ACCAACTAGCAGACTGTTGGGATAGAACGCTACCTTGAATATTGAACACC
CCCGAATCCATGCCACGCATATGCCGCACTAGGCTGCGCACCACCGTTGC
CACTACAGCGAGACTGTCTGTCCGACCTGTGGCTGACCGAGTCAGTGCCA
CGCGAGAAGTGTTGGGCTTGATTCGGGTCCAGCCAGTGGAAAACTCGTCT
GAGCGAGTACTTTTGCGAGGTGCACCATGCAGGCATTCCACGACTGTGAC
CGGCGATGATATAACTCGGCCAGGACCAGCAGGTAGGTTTGGTGGCTATT
CATTTTTTAAAAGCTTTAATCTTGTACGCACAGTCAGTGTTGTGGGTATT
GAAGCCCTTGTGCCCTCGCGTCACGAATCGTATGGTTACTAAGACAGTCT
GATGGTCAGTTATTGACAAGTTGCCTTGTCTCTCGTTGGCTCTATTTCGA
ATACCGAGCACTGTTCGTTGATCATCATCCTACCGAGAGGGTCTTATCTT
TCCGTTTGAAACTCAAACTCAAACAAAGATAAGGCTTTGGTCTGGCTGGA
AGTAGTTCTACAATCAAGACAAACGTCCGCTAACTATTATTCAGGGCTCT
GTATTGGTCGTTCAGAACATTTTGAAAAGAAAAGACGAAGATCAAGCACT
CAAACGTCTGATAACTCAGAATTGCTAAAGTGTGTTTATACTACGTAATA
TTGTTCTGTTGGCGAAACCGATGCACTAAAATATTTACGGATATATTGGT
AATATATTGGTGGAAACGAAGTGATTCGAAGCGCCAAGCGAGTGCGTTAG
TTACCACGAGCAGGTGAGAGGTGAAAACTTGAGTACCAACGGCCTCGCTG
ATTGGCATGAGGACCTGGCCGGAGGACGAAACAATGTGCGTCTCCATCTC
ATCTCTCGTCGAAATCGAGAAACATCTCAGGGGTAGGTATCCTGTGTACA
GTGCGGGAGTTGGATTAAGACCACAAAATCTATATTTTTAGTGGAAAATG
ATTACTTGTGGGGAAAATGCAGATATATTGATTTCGCGATCAAAAAGCAT
ACATCGATATATATATATCGATGTATTGGCCAATGTATTGACACGCCAAT
ACAAAGCCGTAATATTATTGTCAAGTGAGACCGTTTCGGAACGGGGTGTC
TCGAGAACTGGAGTATGAAACTTTCGAATGTTCAGAACTGTAGCGCTACG
CATCGGTACCGATAGGTATATATCGATCGGTCATACCGATAGTTTGACAT
ATTCCCCGACCAGTATCTTTATTATCCACCGCAACGCATGAACGAGGCAG
CGCAGCACACTACGCCCCTCGAAGCATCGTACCACAGCGAAAAATTTGCG
AACTCACAGTCAATGTATTCGGTATTTTAATATTATTATGGTTGGAAGGG
TTCATTTTCTGTAAGAAAATTCCTCAGTTCGAGTTCAGTCTGCCTTCAGG
AGGTACTCGAGATCCTCGATTTTGTAGAGATGAAGAAAAACGCGTAATTT
TTCTGTCTCCAGCGATGCCTCCGGCGAGGCCCCCTCACAATCCGGGGGGG
CGTTGCGGCTCGCGCTTAAGCGCCGGCTTGCTAGTACGTATGTATTCGCC
TGACGCTTCGCGCGACCGGGCTCGCTTCGCTCGCATCGGTATATCAGTTT
CGCCGCCCAATCAATGTCTTCGTTTGCTTTCGAATGACCGATACACAGCC
CCACAGATTTCTCTTCCGACAGATCATGACCTCTACTATTTTTCGAATAT
TTATAGCATAGAGAGTTTTTGAGGGGAGGCGAACAGAGAGGCGAAGACAG
GGCGTTATATACAGAATAACCGCCTGTCATACCTGATGGATGCTATGCGA
GGCCATGTTGCGTTGTACTGTCAACGCGAAGCTACTTGGAGCGGGGATAT
TATTTGATGGGTACATTGTCTACAATATGTACCTGGCATTTTCTCGACAA
CATGCATGTCCCGACCTTGGCTTTGGCCCCTTTGCCCTACTACTGTAAGT
TCTGGCGAACGCACTCGTAGATTGTCTTCGTTGTGGCGGGCGGGTTCGAT
CGTGCGTTGGGTGACCGCAATTAGTGGTGTGGGCGTTGAGAAGGTCGATC
GCTTCTACTTGCTATCGTAAGATGTTATCTCATTTCTCATCGACGTGCTT
CATAAATCACGCCACCTCTGTACTAAATGGTTTCTCCTGCATCCCCAAAT
GTTTTGTTGCAGACGGAGATCGAGTGTTGCCCACGCAAGCGCCCGAACTC
ATTTTTCAAGTACCTTGACCCTCAGTGCGCAACATTGTCCCTGCGCTCTT
GCCTGTTTGCATTAACGTGCTGGCTATGTTTTCACTTGCTTTTCATCGCT
TTTCGCTGCTTGTTAACGTATTTGCTATAAAACACGCAGGTGCCGAGAAC
GATGCCGCAAGGTTCAAACCGACCGACCCTAACTCGTTGCCGCGTCGATT
GTTTAATCTTCTCTCTACGAAAAAGACGAAACGGACCCTTTGTTCCGCAA
GAATGCTGCAAGCGTGCTTGAACAACATCGAGGCAAGCGCTGCCGTTGTT
ATGGTTGTTGGCCCGCGTCTTGTTGATGCAGGTGCCCTTTGGCTGTTTGT
TCGGATTGTTTTTGCTCGTTTTGCGAGGTTTCGCGGTGTGGTACGGGCTG
TTGGTTTTTTTCATGTAGCACTCTATTGCATTGCCTCTGTGCTTCAGAAA
TTGCGGTGGGGTTGATACAGTGACAGAGACAGAAAGGACGCTTTAGTAGA
GGGGAGCGTTGATATCTCGAATTATGTGCTTCGAGTGCTTGCCATGGAAA
ACATGGCACTGTGTTTTTTAGCTCCTGCAGCGAAGTACTGGTGAAGATCG
AAAGGTTAGCAGTGAATTAATCGTGGATCCAGTTGCTAAAGGTTTGCAGG
GAGAGTACTTACTTGAATGTTTCTTTTTTCCCTCTAACCTTGTATTTCGT
ACAGACCATCTTTGTTGCCTCAGGACACATGACTACATACCTCTCACCGC
TATCTGTCAAGTACTAGACAACTCCTGGGGCTTTGCCACACCCAAATGAC
GATTTCCCCATCCCCCCTCATACACGCCTTTTTACCCTTGGGCTGCACAG
CGCAAGACGTGGTATACTGACGCCAAAATGTCCACCGAGTTCCTGACCAA
GCACCTCTGGCTAAGCACTAACGTCTGGCTGATCTCCCGTCGGCTGCTTC
GAGAGGTGATTATCCCGCCGTCGCTGTAAACAATACCCCATGTTATCATA
TGTATTCGCACGACTAGGTGATGTGTCAGCTGCTTGTGTTGGAAAGGACC
GGCTCACAGAAAAATTAGCCCAGCCAACGCGGACTTGATGGACCGACGTT
GAGCGTTTGGTGATGGGTATCCTTGTACTTGTCCCTCGATTATCCACAGT
TTCTCGTTTTATTTTATTTTTCCTTTCCCTTCCTTCTCCATGGCAACTTT
GTACACCGCTCGTTCGTGTTTCTTGTTTATTGGGGTGTGTGCCTCATCCA
CGTGAGGCATATGATTGTCATCATCTATAGCCGCTAGTGGGTGCATGTCC
GTACTGCCCCTAACCTCCCATTCAATGGGCGTGCTTGCTGGGGTATAGGT
AAACATGTGTCCGCATATCATGATTACGGTGTTTCAATTGTCGCAGGGAA
ACGACGGGAAAAAGATTCAAGAGTTACTATTCGACGAGCTTTGGCGGGAG
GCGATTCGGCAGATGCGGTCGATAGACGTGAGTCGCTGCTCAGAGAACGA
ATGCAGCGGTCGACAGCGAGTGATTCGCGCACAGACCTATCACGCCAAAC
GCTTGTTACCCGCTGTCTTGTGCGGCTTCGCTCAGGCGCGAGGTACAAGC
GTATCGCAAAATCTTGACCCACTTGCACTTAATTGTGGTTTGCTATTTAT
CGTTCACTACGAAATGGAATGGCTAGGCTTGTGGAGTCACAGTCCCGTTG
TTTGTCTTGTTTCTTCACCCCATCGATGTAGAACCCATGGGCCCATTCAA
CAACTTCCTTTGAGTATAATAGTTTGAATCATGTCGAGTAAGCTGTGAAA
AACGTGAATCAAGTATTTTCAAGCTGTTTCCAGGAGAACCATCACAATAA
CCGCGATATACATTGTTTATGACTACCACTTAAAAAGGCTGAGCGTATCT
TCTAAACAGTTCTAAGTTCTAAAGCCGATGTCCTCTCTGAACGAAACGCA
AGCCTCGTATGTCGGCGCTTTTTTCGGGACGGAATAGGTTTGCTTGGTGT
CTTGTAGCTTGTGCCGTCGACAAAGTCCTTTGCTTCTCTTTTAGCGCAAG
AATGTTGCGGTTCGCCGTACGACAACAACTACCGTTTTTAGTACCGATTT
TTGACTCCCTTTCGCACCATCGGACGCTGTTGGATGTTTGCGGATCCGGT
GCTCCAGGTTGATGACCTCATGATTCGGAAGTATCTTAAGCAAGCGCAGC
AGCATACGCTCGGGACGCTATGTCAGGTGTGGTTTCCGACAGACCCCAGC
ATCCCGTGCCGCTGCTTCACCCAGAGCTTGATCTATGATTATCTCGTCGC
CGCTGCTTGAGTTGTGACTATCTGCCACGCTTCTCCCAAAGCGACGAGAT
CTCAAGGCTAGCATCCACAATGCGGTATACCATCTGCCTCCGTCGAAAAC
CAACCATTGCGTTCCTCGCATCATCGCCCCGCCGCCTATCCTGCCCACCC
GCCCCTCCGCCTTCCAATTGCCCTGAATCAGTACGACCATGCCTATAGCC
TTGAAGATCGAGAAGAGCGCCTGGACGCCTTGTCCGGCGCCCTCTGGCGT
GGCATCTACTCACGTAATACAAGGCTCGACGAAGAGCTCGTCAGGCTGAT
GGCCGAGCACGTGGACTCTGAGCTCAGCGACGTATACGCACTTGATGAGG
TAAGGGCGAGACATCAGTAGTGGGTCGGTGGGAGAAGGGAGGGGTTCCTA
GCAGGCCCCACAACGCGTCCAACGTGCGTTTGTTTTGTGTTGTACTCGTT
TTAAGGAATTTATGCTAAGAGCCGCGGGGTTGCTCTGAACTATCGATTTT
TGAACACTTGCACGGAGATGGTGTTGTCGTGCAGGGTTTTCGGCGTTGGT
GGCATGCTATGTCGGGCAGTTAGTTGCCTCTGCATGCCACACGAGAGTGG
GAGGTTGCTGCGCGGTGGACCCTCTGAACCTGTATAGCTAGGTCGCTGTC
GATCTTCCAGTCGAAGGCTATTGGATCCGCGCCACAACCGATTGATTCCT
TCCCTCGAACATCCCCGTGCTATTGACGGCCAATGTCAATACCCATTACA
GGTCCCACCTGGTGTTGGTGAAAGTTGAGTCAGACTGAAATCCGGCGCTT
GTTTTTACTTTTAGACCAATTTCGATCTATCAGACGCGGTGTTTTTTTTT
GGTTTTTTTTGGGTTTTTTTGGTATGCTACCGACCTGTGATCAATCAGAT
CTCCCTGTTTAAATCCATGCTGTATTTTTACAGGACGCCCTATTCGGCGG
TTGTATTGACTTTGGACTGCCCTCTCCGGAAATAATGAACCTAAACGCTG
CACAAGGCGGAAAGCCAACGCACAGTACCATGACGAAGGACAGACCTGCC
AAAGTACCGCCGATGGACCCGGACCTTGGAGATGACAATAAAGGACGGTG
GCGGGCATCTTTGGCGGAGAGCGGGAAGGTATGCACGATGCGGCAGGCAC
ATTGCATTGTAGTTTCCGCAGCTGTCGTTGGTGGGTTTGTAACATATGAT
GCTGTAGCACCCTGCAGGCGGAGTGAAGTTTTCACTGAAGTGAGACGTGG
GCTGCTCTGTGGCCCGACGTTGGTGTCAAGCTGGTACGAAGCGCTTGTAT
TCTCTTATGTTTTATGTGGGCAATGTCTGCTGTAGCAAACCCACATTTGC
GTGTTACGTATCGGTGAACTATATTGCGACTGCCAGATTAAATCAAAATC
AGTTCGGGCAATATTGATTTGGCAAAGGTTGTTTGCTCGAGCTTGCGGGT
CGTCAAATACTTTCGTCGCAGTCTCAGATGTGTTTTAAAAAATAGATTAC
TTGTGTGTTGTTGTCGTACGGAGAATGCTGCTAATCGACGGTGCCGGACA
AGCTCATCAACCACACGACAATTCTCGTGTCTTTACTTCCAGGTATACTA
CTGGCACACGGTGACGAACGAAGCAACGTATGAAAATCCCGAGGGCGTCG
AGTACGTTGCGGCTACTATGCCCGTCCAGGAAAACGCGAAGGGGGCAAAA
GAGGCGAAGGCATAACTTGTAGGCATGTTTGTTATTCCTTGTGTAGCAGT
GCGCAGCAGACGTTGGCCCTGTTCAGCGCGGGTTAGCTGTTTCCCTTTGT
ATTAACAAGGGGAATGAGGTGGTGCTGTGCCAGGAGCTATCGGTTGATTG
TTGGCAGTTCGAGAGTATCTGGACGTTGATTAAACTGCGTCGTATTCATT
GGGGGGGTGCGGACTGTACGGTCGAAGTTGTCTTTCCAAATGGAAGTATT
TTGTGCACCTCGAGCGTGGTTCGTTGTATGTAGCTCTTGATTTGTCACTC
ATGACCAATAGTGGTTGAAGGAATCGGTACCCGTCGTACCAAGTACGTTT
CTTCATGAATGGCATGGTGGAGCGTGCGTTCCACACCCCGTGCGTTCTGC
GCATTTATTCGGCAGGGGACAACACCATAATTTCGCTGTTATTAGCAGGA
CTCGGGTATAGTCTGAGTCACTCCCCCCTTTCATAGATGTACTGGTTGAA
ACGGTGACCACAAACTCAGCTTAACACGAAAAACGTGTCCTGCAGTGGTA
GCCCTGACTTGTCTGCTCACAGGAATTGCTTATTCCCAGCTTCTTTCCAT
TTCCACCCCATAGTGTGCAACCTCTGTTTACACCACTTGGAAGCGTTGTG
AGGGGAGGAGCTTAAGCCCACGACCTGGTAACAAGTACCAAGCCCAGCTT
CTATATTCTTTTCTAAAGAAAATCACCGAAGTCTAGCAAGACGATCTGGT
GGTCCTCAGCTCCCCGATCCAGAGGCCGCCGACATAATCGGTCGGAATTG
TTCACGATAGGACGCAGCCGCATGTTCTCGCAGGTCGGTCCCAGGTTTTG
TGCGAGTCCGCTTCTGATTTAATCTGCACATGCATGGAGTGACACAGTCA
TCGGCGACGCATTGAGAGTGCTGTCCAGCACCGTAGGGGAC

Coding sequence (CDS) from alignment at H-paniculata_contig6265:1064..8454+

>mRNA_H-paniculata_contig6265.14026.1 ID=mRNA_H-paniculata_contig6265.14026.1|Name=mRNA_H-paniculata_contig6265.14026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at H-paniculata_contig6265:1064..8454+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCACGCATATGCCGCACTAGGCTGCGCACCACCGTTGCCACTACAGC
GAGACTGTCTGTCCGACCTGTGGCTGACCGAGTCAGTGCCACGCGAGAAG
TGTTGGGCTTGATTCGGGTCCAGCCAGTGGAAAACTCGTCTGAGCGAGTA
CTTTTGCGAGGTGCACCATGCAGGCATTCCACGACTGTGACCGGCGATGA
TATAACTCGGCCAGGACCAGCAGATGCCACGCATATGCCGCACTAGGCTG
CGCACCACCGTTGCCACTACAGCGAGACTGTCTGTCCGACCTGTGGCTGA
CCGAGTCAGTGCCACGCGAGAAGTGTTGGGCTTGATTCGGGTCCAGCCAG
TGGAAAACTCGTCTGAGCGAGTACTTTTGCGAGGTGCACCATGCAGGCAT
TCCACGACTGTGACCGGCGATGATATAACTCGGCCAGGACCAGCAGGTGC
CGAGAACGATGCCGCAAGGTTCAAACCGACCGACCCTAACTCGTTGCCGC
GTCGATTGTTTAATCTTCTCTCTACGAAAAAGACGAAACGGACCCTTTGT
TCCGCAAGAATGCTGCAAGCGTGCTTGAACAACATCGAGGTGCCGAGAAC
GATGCCGCAAGGTTCAAACCGACCGACCCTAACTCGTTGCCGCGTCGATT
GTTTAATCTTCTCTCTACGAAAAAGACGAAACGGACCCTTTGTTCCGCAA
GAATGCTGCAAGCGTGCTTGAACAACATCGAGCGCAAGACGTGGTATACT
GACGCCAAAATGTCCACCGAGTTCCTGACCAAGCACCTCTGGCTAAGCAC
TAACGTCTGGCTGATCTCCCGTCGGCTGCTTCGAGAGCGCAAGACGTGGT
ATACTGACGCCAAAATGTCCACCGAGTTCCTGACCAAGCACCTCTGGCTA
AGCACTAACGTCTGGCTGATCTCCCGTCGGCTGCTTCGAGAGGGAAACGA
CGGGAAAAAGATTCAAGAGTTACTATTCGACGAGCTTTGGCGGGAGGCGA
TTCGGCAGATGCGGTCGATAGACGGAAACGACGGGAAAAAGATTCAAGAG
TTACTATTCGACGAGCTTTGGCGGGAGGCGATTCGGCAGATGCGGTCGAT
AGACGTTGATGACCTCATGATTCGGAAGTATCTTAAGCAAGCGCAGCAGC
ATACGCTCGGGACGCTATGTCAGGTTGATGACCTCATGATTCGGAAGTAT
CTTAAGCAAGCGCAGCAGCATACGCTCGGGACGCTATGTCAGTACGACCA
TGCCTATAGCCTTGAAGATCGAGAAGATACGACCATGCCTATAGCCTTGA
AGATCGAGAAGAGCTGATGGCCGAGCACGTGGACTCTGAGCTCAGCGACG
TATACGCACTTGATGAGGCTGATGGCCGAGCACGTGGACTCTGAGCTCAG
CGACGTATACGCACTTGATGAGGACGCCCTATTCGGCGGTTGTATTGACT
TTGGACTGCCCTCTCCGGAAATAATGAACCTAAACGCTGCACAAGGCGGA
AAGCCAACGCACAGTACCATGACGAAGGACAGACCTGCCAAAGTACCGCC
GATGGACCCGGACCTTGGAGATGACAATAAAGGACGGTGGCGGGCATCTT
TGGCGGAGAGCGGGAAGGACGCCCTATTCGGCGGTTGTATTGACTTTGGA
CTGCCCTCTCCGGAAATAATGAACCTAAACGCTGCACAAGGCGGAAAGCC
AACGCACAGTACCATGACGAAGGACAGACCTGCCAAAGTACCGCCGATGG
ACCCGGACCTTGGAGATGACAATAAAGGACGGTGGCGGGCATCTTTGGCG
GAGAGCGGGAAGGTATACTACTGGCACACGGTGACGAACGAAGCAACGTA
TGAAAATCCCGAGGGCGTCGAGTACGTTGCGGCTACTATGCCCGTCCAGG
AAAACGCGAAGGGGGCAAAAGAGGCGAAGGCATAAGTATACTACTGGCAC
ACGGTGACGAACGAAGCAACGTATGAAAATCCCGAGGGCGTCGAGTACGT
TGCGGCTACTATGCCCGTCCAGGAAAACGCGAAGGGGGCAAAAGAGGCGA
AGGCATAA