mRNA_H-paniculata_contig62633.14024.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62633.14024.1
Unique NamemRNA_H-paniculata_contig62633.14024.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: UPI00092F2BFF (uncharacterized protein LOC109329337 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F2BFF)

HSP 1 Score: 68.2 bits (165), Expect = 1.010e-11
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            +PK ++EA  SL+ E WQ A E EM+ +  N VWT V+  K+   +    +YK+K   DGKVE YK RLVA GYRQ
Sbjct:  194 DPKCYEEAMRSLDHEKWQEAMESEMESMKINKVWTLVDASKDIKPIGCKWVYKKKNGADGKVETYKARLVANGYRQ 269          
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 66.6 bits (161), Expect = 4.450e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            EP+ ++EA AS E E W+RA E E   LI N  WT+ + P  +  ++  +I+K+K D DGKV +YK RLV  G+ Q
Sbjct:  564 EPQTYEEAMASNEVEQWRRAIEEEESALIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQ 639          
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A182HAC3_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAC3_AEDAL)

HSP 1 Score: 64.7 bits (156), Expect = 2.110e-10
Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            EP  ++EA  S E E W +A   E Q LIDN  W  V+ P ++ ++    ++KRK++ DGKV+++K RLVA G+ Q
Sbjct:  349 EPTTYEEAVGSEEKEKWIKAMSEEYQSLIDNDTWELVDPPTDRNIIGSRWVFKRKLNADGKVDRFKARLVAQGFAQ 424          
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 62.0 bits (149), Expect = 2.640e-10
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            +P+  +EA  S + E W+ A E E++ L  N  W  V RP+ + VV    ++KRK+++DG+VE+YK RLVA GY Q
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQ 105          
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE)

HSP 1 Score: 62.4 bits (150), Expect = 2.940e-10
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            EP    EA +S E + W+ A E EM+ L  N V+  VE PKNK V+    I++RKI+ DG VE+YK RLVA  + Q
Sbjct:    5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQ 80          
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE)

HSP 1 Score: 58.9 bits (141), Expect = 1.220e-9
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1
Query:   70 EMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            E + L +N VW  VE PK++ VV    ++KRKI E+GKVE+YK RLVA GY Q
Sbjct:    4 EFESLEENQVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQGYSQ 56          
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A5N5FUF0_9ROSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5FUF0_9ROSA)

HSP 1 Score: 61.2 bits (147), Expect = 3.520e-9
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            EP ++++A +S+   HW+ A + E + L   G W  V  P+N+ V+    +YK K D+DGKV +YK RLVA G+ Q
Sbjct:  615 EPTHYKQAVSSV---HWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQ 687          
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A151T9B6_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T9B6_CAJCA)

HSP 1 Score: 61.2 bits (147), Expect = 3.520e-9
Identity = 27/62 (43.55%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   43 EHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            E W+ A ++E++ +  NG W  ++RPK   VV    +YK K++E GKV+K+K RLV  GY Q
Sbjct:  799 EKWRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGKVDKFKARLVVKGYAQ 860          
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A540NMU0_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540NMU0_MALBA)

HSP 1 Score: 58.9 bits (141), Expect = 5.860e-9
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            EP ++++A   + + HW+ A + E + L   G W  V  P+N+ V+    +YK K D+DGKV +YK RLVA G+ Q
Sbjct:   52 EPTHYKQA---VTYVHWRNAMQEEFEALQKQGTWELVPVPQNRNVIGSKWVYKLKKDQDGKVSRYKARLVAQGFSQ 124          
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Match: A0A177U1E5_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U1E5_9BASI)

HSP 1 Score: 60.1 bits (144), Expect = 9.050e-9
Identity = 27/76 (35.53%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMMIYKRKIDEDGKVEKYKCRLVAYGYRQ 228
            EP  + EA+   +WE W +A + +M  L+    W  V+ P  +  +    +YK K+DE+GK +++K RLVA G+ Q
Sbjct:  731 EPATYAEARRRSDWEKWNKAMDEQMDALVGMHTWDLVQLPPGRKAIGSRWVYKLKLDEEGKADRWKARLVAQGFTQ 806          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62633.14024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00092F2BFF1.010e-1148.68uncharacterized protein LOC109329337 n=1 Tax=Lupin... [more]
A0A0J7K690_LASNI4.450e-1144.74Retrovirus-related pol polyprotein from transposon... [more]
A0A182HAC3_AEDAL2.110e-1042.11Integrase catalytic domain-containing protein n=1 ... [more]
UPI0015A81C6A2.640e-1043.42uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A1X7VXK3_AMPQE2.940e-1047.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1X7TFD5_AMPQE1.220e-954.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N5FUF0_9ROSA3.520e-940.79Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151T9B6_CAJCA3.520e-943.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A540NMU0_MALBA5.860e-939.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177U1E5_9BASI9.050e-935.53Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62633contigH-paniculata_contig62633:100..327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.5
Seed ortholog evalue4.8e-08
Seed eggNOG ortholog3641.EOY26809
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GHHH@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930715.498556-CDS-H-paniculata_contig62633:99..3271622930715.498556-CDS-H-paniculata_contig62633:99..327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62633 100..327 -
1691481419.7951639-CDS-H-paniculata_contig62633:99..3271691481419.7951639-CDS-H-paniculata_contig62633:99..327Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62633 100..327 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62633.14024.1prot_H-paniculata_contig62633.14024.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62633 100..327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62633.14024.1

>prot_H-paniculata_contig62633.14024.1 ID=prot_H-paniculata_contig62633.14024.1|Name=mRNA_H-paniculata_contig62633.14024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
EPKYHQEAQASLEWEHWQRAQEVEMQGLIDNGVWTQVERPKNKLVVSRMM
IYKRKIDEDGKVEKYKCRLVAYGYRQ
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mRNA from alignment at H-paniculata_contig62633:100..327-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62633.14024.1 ID=mRNA_H-paniculata_contig62633.14024.1|Name=mRNA_H-paniculata_contig62633.14024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig62633:100..327- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCAAGTATCACCAGGAGGCGCAGGCGTCGCTGGAGTGGGAACACTG GCAAAGAGCGCAGGAAGTCGAGATGCAAGGCCTAATCGACAACGGGGTTT GGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGAGCAGGATGATG ATCTACAAAAGAAAAATCGACGAGGACGGAAAAGTGGAGAAATATAAGTG CCGCCTGGTCGCCTACGGATATCGTCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig62633:100..327-

>mRNA_H-paniculata_contig62633.14024.1 ID=mRNA_H-paniculata_contig62633.14024.1|Name=mRNA_H-paniculata_contig62633.14024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig62633:100..327- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCCCAAGTATCACCAGGAGGCGCAGGCGTCGCTGGAGTGGGAACACTG
GCAAAGAGCGCAGGAAGTCGAGATGCAAGGCCTAATCGACAACGGGGTTT
GGACGCAAGTGGAGCGCCCGAAGAACAAGCTGGTCGTGAGCAGGATGATG
ATCTACAAAAGAAAAATCGACGAGGACGGAAAAGTGGAGAAATATAAGTG
CCGCCTGGTCGCCTACGGATATCGTCAGGAGCCCAAGTATCACCAGGAGG
CGCAGGCGTCGCTGGAGTGGGAACACTGGCAAAGAGCGCAGGAAGTCGAG
ATGCAAGGCCTAATCGACAACGGGGTTTGGACGCAAGTGGAGCGCCCGAA
GAACAAGCTGGTCGTGAGCAGGATGATGATCTACAAAAGAAAAATCGACG
AGGACGGAAAAGTGGAGAAATATAAGTGCCGCCTGGTCGCCTACGGATAT
CGTCAG
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