mRNA_H-paniculata_contig62595.14017.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62595.14017.1
Unique NamemRNA_H-paniculata_contig62595.14017.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A4Y2F840_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F840_ARAVE)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-8
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 1
Query:   22 EEFWMADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQG 279
            ++ W+ADSGA+ HMTP  E    YE+ S+   V + N ET+   G G + + M   G+     L  V  VP++  NLFSV   V++G
Sbjct:    9 KDMWLADSGASVHMTPQKEYFLSYESFSSPKDVKIGNNETMFAFGLGTVKVRMLVSGKWENNHLSDVWFVPEVSRNLFSVSRAVDKG 95          
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.490e-8
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   31 WMADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLTV 288
            W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+P LD  L SV  +  +G++V
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSV 346          
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.510e-8
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   31 WMADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLTV 288
            W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+P LD  L SV  +  +GL V
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.010e-8
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   31 WMADSGATAHMTPSNELMFDYE-TCSNLFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLT 285
            W+ DSGAT+HMTP  E +FD E T S++ VT+A+G+ L + G G + +   +   I    +  V ++P LD  L SV  +  +GLT
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.160e-8
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   31 WMADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLTV 288
            W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I    +  V ++P LD  L SV  +  +G++V
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSV 328          
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.270e-7
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   31 WMADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLTV 288
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I    +  V ++P LD  L SV+ +  +G++V
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRI---KMIDVLYIPGLDRQLLSVRRLAERGMSV 349          
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A4C1ZFI8_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1ZFI8_EUMVA)

HSP 1 Score: 56.6 bits (135), Expect = 2.940e-7
Identity = 29/86 (33.72%), Postives = 46/86 (53.49%), Query Frame = 1
Query:   31 WMADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLTV 288
            W+ DSGA+ HM    +L   Y T  +  V V NG  + + G G++ + + +  E    ++  V HVP+L TNLFSV    ++G  +
Sbjct:  219 WLVDSGASEHMCCDYKLFNSYSTVKDKSVIVGNGTKINVKGCGQVALQVWNGSEWIDTTIDNVLHVPELKTNLFSVNCATSRGYVI 304          
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A4C1XNS1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1XNS1_EUMVA)

HSP 1 Score: 56.6 bits (135), Expect = 3.100e-7
Identity = 29/86 (33.72%), Postives = 46/86 (53.49%), Query Frame = 1
Query:   31 WMADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLTV 288
            W+ DSGA+ HM    +L   Y T  +  V V NG  + + G G++ + + +  E    ++  V HVP+L TNLFSV    ++G  +
Sbjct:  155 WLVDSGASEHMCCDYKLFNSYSTVKDKSVIVGNGTKINVKGCGQVALQVWNGSEWIDTTIDNVLHVPELKTNLFSVNCATSRGYVI 240          
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A4C1Z7H0_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1Z7H0_EUMVA)

HSP 1 Score: 56.6 bits (135), Expect = 3.240e-7
Identity = 29/86 (33.72%), Postives = 46/86 (53.49%), Query Frame = 1
Query:   31 WMADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLTV 288
            W+ DSGA+ HM    +L   Y T  +  V V NG  + + G G++ + + +  E    ++  V HVP+L TNLFSV    ++G  +
Sbjct:  182 WLVDSGASEHMCCDYKLFNSYSTVKDKSVIVGNGTKINVKGCGQVALQVWNGSEWIDTTIDNVLHVPELKTNLFSVNCATSRGYVI 267          
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.240e-7
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   31 WMADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIDGYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLTV 288
            W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I    +  V ++P LD  L SV  +  +G++V
Sbjct:  242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRI---KMIDVLYIPGLDRQLLSVSRLAERGMSV 325          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62595.14017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y2F840_ARAVE1.630e-837.93Uncharacterized protein n=1 Tax=Araneus ventricosu... [more]
A0A329SN38_9STRA3.490e-837.93Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA3.510e-839.08CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A2P4XNP3_9STRA5.010e-839.53Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A225UGS0_9STRA6.160e-835.63Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3X5U6_9STRA2.270e-736.78CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
A0A4C1ZFI8_EUMVA2.940e-733.72Retrovirus-related Pol polyprotein from transposon... [more]
A0A4C1XNS1_EUMVA3.100e-733.72Retrovirus-related Pol polyprotein from transposon... [more]
A0A4C1Z7H0_EUMVA3.240e-733.72Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A4BQ03_9STRA3.240e-736.78Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62595contigH-paniculata_contig62595:139..426 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue4.2e-09
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930714.5113766-CDS-H-paniculata_contig62595:138..4261622930714.5113766-CDS-H-paniculata_contig62595:138..426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62595 139..426 -
1691481419.33353-CDS-H-paniculata_contig62595:138..4261691481419.33353-CDS-H-paniculata_contig62595:138..426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62595 139..426 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62595.14017.1prot_H-paniculata_contig62595.14017.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62595 139..426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62595.14017.1

>prot_H-paniculata_contig62595.14017.1 ID=prot_H-paniculata_contig62595.14017.1|Name=mRNA_H-paniculata_contig62595.14017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
PVPVDGCEEFWMADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPID
GYGKMLIWMKDRGEIHKFSLCRVAHVPDLDTNLFSVQIVVNQGLTV
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mRNA from alignment at H-paniculata_contig62595:139..426-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62595.14017.1 ID=mRNA_H-paniculata_contig62595.14017.1|Name=mRNA_H-paniculata_contig62595.14017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at H-paniculata_contig62595:139..426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGATGGCCGACAGTGGGGC TACGGCCCACATGACTCCGTCTAACGAATTAATGTTTGATTACGAAACCT GCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAC GGATATGGTAAGATGTTGATATGGATGAAGGATCGGGGCGAGATACACAA ATTCAGCTTATGTCGTGTAGCGCATGTGCCGGACCTGGACACAAATTTGT TTTCCGTACAGATTGTAGTGAACCAGGGACTTACTGTC
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Coding sequence (CDS) from alignment at H-paniculata_contig62595:139..426-

>mRNA_H-paniculata_contig62595.14017.1 ID=mRNA_H-paniculata_contig62595.14017.1|Name=mRNA_H-paniculata_contig62595.14017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig62595:139..426- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGATGGCCGACAGTGGGGC
TACGGCCCACATGACTCCGTCTAACGAATTAATGTTTGATTACGAAACCT
GCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAC
GGATATGGTAAGATGTTGATATGGATGAAGGATCGGGGCGAGATACACAA
ATTCAGCTTATGTCGTGTAGCGCATGTGCCGGACCTGGACACAAATTTGT
TTTCCGTACAGATTGTAGTGAACCAGGGACTTACTGTCCCAGTACCAGTA
GATGGTTGTGAGGAGTTTTGGATGGCCGACAGTGGGGCTACGGCCCACAT
GACTCCGTCTAACGAATTAATGTTTGATTACGAAACCTGCAGTAATTTGT
TTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGACGGATATGGTAAG
ATGTTGATATGGATGAAGGATCGGGGCGAGATACACAAATTCAGCTTATG
TCGTGTAGCGCATGTGCCGGACCTGGACACAAATTTGTTTTCCGTACAGA
TTGTAGTGAACCAGGGACTTACTGTC
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