mRNA_H-paniculata_contig6254.14012.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6254.14012.1
Unique NamemRNA_H-paniculata_contig6254.14012.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6254.14012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6254contigH-paniculata_contig6254:7631..12155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size453
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6254.14012.1prot_H-paniculata_contig6254.14012.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6254 7631..12155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930713.860708-CDS-H-paniculata_contig6254:7630..77021622930713.860708-CDS-H-paniculata_contig6254:7630..7702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 7631..7702 +
1691481419.0083816-CDS-H-paniculata_contig6254:7630..77021691481419.0083816-CDS-H-paniculata_contig6254:7630..7702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 7631..7702 +
1622930713.876179-CDS-H-paniculata_contig6254:11292..115831622930713.876179-CDS-H-paniculata_contig6254:11292..11583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 11293..11583 +
1691481419.019635-CDS-H-paniculata_contig6254:11292..115831691481419.019635-CDS-H-paniculata_contig6254:11292..11583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 11293..11583 +
1622930713.8921843-CDS-H-paniculata_contig6254:12065..121551622930713.8921843-CDS-H-paniculata_contig6254:12065..12155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 12066..12155 +
1691481419.0299754-CDS-H-paniculata_contig6254:12065..121551691481419.0299754-CDS-H-paniculata_contig6254:12065..12155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6254 12066..12155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6254.14012.1

>prot_H-paniculata_contig6254.14012.1 ID=prot_H-paniculata_contig6254.14012.1|Name=mRNA_H-paniculata_contig6254.14012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
LHRGPFPVIRVTPTDGAMSSTTTADSSYKSSGRMTTFSGHIAPRGQHHQQ
GRREAYTSGRAAGALVVGASGSGAARHSGDLNGPDVAKTTNAAAVEDSAK
PQVAPLKEDKDIMNFFLFLKIVTWISAIYMSASTWAFFYEPDTGEICPYR
*
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mRNA from alignment at H-paniculata_contig6254:7631..12155+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6254.14012.1 ID=mRNA_H-paniculata_contig6254.14012.1|Name=mRNA_H-paniculata_contig6254.14012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4525bp|location=Sequence derived from alignment at H-paniculata_contig6254:7631..12155+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCATCGTGGGCCTTTCCCTGTAATTCGCGTCACACCCACCGACGGTGC
CATGTCATCCACTACTACTGCGGTAAGTCGCATTGGAAACATCATCAATA
TATCGAACGTGAAGTAGAGGGCATTGATAGCAGACGATGTGGTATTTGTC
GCGTATGAACTAGCGGTCCGCTACGACGTTCGAGTGTCACTATTTCCACG
GTCCTATTGTGTGTTGGCGTATCTTATCCGTGAAGAGGACTGGGGTATAC
CCATCCACGTCTGAGAATGAATCTGCCATATCTGCAGCTAGCTATAGCGA
GTTTGGTTGTTCAGCAGTTGCTAGTAGAGCTCACAGCGAAATGGTCGATG
GTGGCAACACATGGCCCACATGCTATACATGATCGGTAATTGGTGGTGAT
CTTGAGGTGCAAGCCAAGCTGATAATAGCAGGGTCTGCACACAAGTGTGT
TGTATTAGTTTCCACGACAATCACCCTCGTGAATGGAGCTCTGCTGTATT
GGAGGGAATGTTGGAGTACACGTGCGCAGAGACCGATCGATATGGAGGTC
GGGACACCGGCAATAGGCCATATACACACAGAGAGAATATAGTGAGTGGA
AGAAATACCCATTGACCGGCACAACAAGTACAGCTAGAAGTATGTAATCG
AAGTCTGGCTTGCGGAGTATCTGTTTCTTGCCGATTTTTCAGAGCAATGG
AGGCCTCCTCAGCATACTATCTTTGGAGAGCTGCTTCTTATTCTCTCTTT
TAGAGAATCCAGGTTGTCGCACCGCTGCTATTTTCTCTACGCTGTTCCAT
CGAAGGCGAGGAACGGTTGTTTTATTATTTGTAGTTGTGGATGTGTGCCC
AAAACAGACAAGGTACAGTATGATACAGAAGTGATACACGTAATGCAAAG
GTAAAACAGGGAGGGCTTGATTAGGCTATCTTACCTATTATCTAATCATC
CATCTTCGTTCCATGTATTTTCGTTGTTGTATATATACTATTAAGTGAAT
TCGCCGACCAAGTATCTGATTATTAGTATATTTACCAATAATAGTCACGG
TAAATTTGAATTACCCGCCATTGTCTTGGGCTGTCCAGCTTACTTCATAC
CACTCGATGTGGGCGGGTGGGTGTTGCGAATGTTGTTGGCCACTAATATA
TATATACACACACACACACATATATATATATACACACACAGTCGCGGGAG
TAAATTATAAGCAGCGCTCGCACATACAATTCTTCGTCATTGAAGCTTTT
ATGAAAACTCAATTTCCACAGCAGCGGCACTGCTCCAGCCAACCCACCTG
CTCACGATAATAACATTAACTTTAACCCTAAACCCGAAGCAGTAGACTTA
GCGTGCGTTGGCATGGCGTGCATCTGACTAACCTATTGACAGGGCGTACA
TGTAACTAAAACTGCGTTGTTGGCGAAAATGTACTTGGATGTGCGAGCGC
TGTTTCTGATTATGCTCGGAGGGTAGTATGTCGCAGCAGCCTTCACATAT
GTCGCAGCTGCCTTCACATATGTCACAGCTGCCTTCACACATGTCGCCAG
CGGCCGTCACACATGTCGCACACACCAGATTATATTTCATGGAGCTCTGT
ACATCAAACCCTGCCATGAAGATCCTTATGTTACGAGAAAAGTCGCCGGA
GTAGGAAAGTCTACTACTCAACGATTGAGGCCATCTCCCGTCCGACCAAA
GTAAGAATTGAAAATGGAACCCATTTTTTTATTACCCCGTACTGCGCGAT
CTTGGCTGCCTGGGTGTGTGTGCGTTGTGAATTCAGCTATTATAACCACA
ACCTGTCGTAGGTGGTGGAATTGCTTGACTACGGATAGAGCACGGTTGCA
GACCTGCTTTGCTCGAAATTGCACTTTATGTTGATGATTTGTTTCAGGGG
ATTGTTGCGAATTGCGGTGCAACATATATCGTTGTGTCGTGTGCATTATT
TGAGCCCGAATTGTACTCCACTGCAGGGTGATATCTGCAACCAGATGGAT
TTTACCAGAGGGGTAAAAAACTGAAATAAATCGTAAATGCCTATATTATG
TATTCTCCAACACATGCGCTTGATATCTAACGGAAAGGTGTCCCTACTGT
ACACGCCTCACGCAACATATACACGGTGGTAGTGCTTTCGCTGCCACTAC
CCCTTGCAAGCATATGACTTTCTTGGCTCTGATGCGCCCGGCCCGGCTTG
TACTAAAAGGCCGGCCAGATTCCTTCTGCATCCTTGTGCCTGTGCTTTCA
TCCGAGGACGATCTCTGCTGTTTACGGTGACCTGCTCAGCATCATGAGTA
TCTCTGATCGCGGTATGATTGGTCTTGTTTTTTTAGAGGAAGACTAAAGT
CAAACAGTTAGTAGTGTGGCCTACCCCCGGCACGAACCCGCAAGAGGATG
ACGGATGCCAAGCGTGTGATGTATGGACACCTCCTCCACAGTCTTGCCAC
TGCTCAGCAGTACATCAACAGTCAGTACAGACGGTGCAGCAGACATCGGC
AGCTACTGTAGGTCCTCCATGGCTTGTAGATCGTGGCGTTATCGCGGAAA
TACGTGGAAACACGTTCGATGACCTATGACATAAGAGCGCTGATTTCGAT
ATGTCGCCCATCACTCACTAGTCACCTCTACCTATATGTTGTTGCCAGCC
TGCACCAATTTCACCCCTCACCCGACGCTGCGGATTTTTAGAACTAGACC
CAAAGTTGTTAATAGACGCCGGTAGCGCCAAGATATGGATCATGGCCGTG
TGTGTTGGAGGTACCATCATGGAACATACTGTGCGTTGTGCGTGGCACGA
TGTTTTAGTTATTTATTTATTTATTTATTTAAATGGTGCCGTGAGAAGTG
GGTCAAAGAAAAGATCGATGCGATTTTTCTACAGTTTGAATTTTTGAAAA
ATCAATTTTCAAACGCAAGTTTCGAACGCTTCTATGGTGACAACAATGCA
CACCACGACCCTCGTAGTGGTCGGTGGTGTCCGCTAGGCACTATAGACTG
TGCGTTCGATACCCTGTTGTCCTCATATGTATACACTAAGGTCCACTAGC
TAGAATAGATGGGAACTTTGGCTCTTAAAGTTTCTTGTACGTTTGACATA
TTTCCGTAAGAAAAGCGGTCGCTAGGAATGACCCTCAGAACAAAAGGCTC
TGACAACCTTATTATTAATGTGAATTAGGACACAGCCACAATTTGAGCCT
TATTTCTTGGACCGAATTTCTTATGGTTCAGCAAAAATTGAGCCTCAAGT
TTTTAATTTGTGATGTCTTATCAACGGGCCCGTTCTGTGGATCATGTGCG
CGCCTGTAACGCGGCCGTCCCGTGTCCTAGTAATGCCCTTAAATCGTGCA
GGGTATCGTGTTTTGGTGGTCTCGAGTCTGGAACGATCCCCAAAAATGCG
GATCATCATCATGTTGTACATATCGTTGGCGCAATAAGTGAAGTTTCGGG
GAAAATGTTTCTCTTCGCTGAATTTTTGTTGATCATTGGGAAAAATATTA
CGATTCAGGAAGGTTGTTACCATTCGGGGTGTTGCGGTTGCTATTCGGGA
CAATTGGTTACCCTGAGGAAATACCTTCATTCTCACAGGAGGACGGAATT
ATACGCTACGGGCTGTTATTATACGTTTCCTCTAGAACTAACTCCTGTGC
CTTGCGCGACAGGATTCGTCGTACAAATCCAGTGGTAGGATGACAACCTT
CAGTGGCCATATCGCGCCACGAGGGCAGCACCATCAACAGGGACGTCGAG
AGGCTTACACTTCTGGTAGAGCTGCTGGTGCGTTAGTCGTGGGAGCCTCA
GGGAGCGGTGCAGCGCGTCATAGTGGCGACTTGAATGGACCAGATGTTGC
TAAGACGACTAACGCTGCTGCTGTCGAGGACAGTGCCAAGCCGCAGGTGG
CACCACTAAAGGAGGACAAGGACATCATGAACTTTTTTCTCTTCCTTAAG
ATTGTGAGTGTAACGAGATATGATTTGCGGGGAGGGGATTTCTGACACCA
GCATCTTTGGTATTTCTTTAAATGTACTAGTGTACTGTGACATGGGTTGT
ACACACAGCACCAGGTGAAGATTCTCCGAAGAATATGTTACGAGTGTGCC
TTTAATCCCGCATCAACTCTTGCTGGATCATGTTTTCGCACATTCGTCTA
ATATTTACTAATACTCTTATTTTTTTTATAATATCTGGGCTTTGTTCCCG
TCATCCCGGATAATCGTCCTTCCAGACCAAGTGAGCATCATCAGCTTGGT
GAATCGTGCCTGGATTTCGGCTCGTGTACTGCGTATGGTGTGCATACATC
AACAAGGGCAACCCCGAAGAATGCTAAAATAATGTAGGGATCACACAATG
CCTAGGGATGGGGGTCCATTGGAAAATCCTTGTATATAATTTGATACACT
CATTGCTATGAAAACGTTTTTCTCAACAAAATCAGGTGACATGGATATCT
GCGATCTACATGTCAGCCAGCACATGGGCTTTTTTCTACGAGCCAGACAC
AGGAGAAATCTGCCCGTACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6254:7631..12155+

>mRNA_H-paniculata_contig6254.14012.1 ID=mRNA_H-paniculata_contig6254.14012.1|Name=mRNA_H-paniculata_contig6254.14012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig6254:7631..12155+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCATCGTGGGCCTTTCCCTGTAATTCGCGTCACACCCACCGACGGTGC
CATGTCATCCACTACTACTGCGCTTCATCGTGGGCCTTTCCCTGTAATTC
GCGTCACACCCACCGACGGTGCCATGTCATCCACTACTACTGCGGATTCG
TCGTACAAATCCAGTGGTAGGATGACAACCTTCAGTGGCCATATCGCGCC
ACGAGGGCAGCACCATCAACAGGGACGTCGAGAGGCTTACACTTCTGGTA
GAGCTGCTGGTGCGTTAGTCGTGGGAGCCTCAGGGAGCGGTGCAGCGCGT
CATAGTGGCGACTTGAATGGACCAGATGTTGCTAAGACGACTAACGCTGC
TGCTGTCGAGGACAGTGCCAAGCCGCAGGTGGCACCACTAAAGGAGGACA
AGGACATCATGAACTTTTTTCTCTTCCTTAAGATTGATTCGTCGTACAAA
TCCAGTGGTAGGATGACAACCTTCAGTGGCCATATCGCGCCACGAGGGCA
GCACCATCAACAGGGACGTCGAGAGGCTTACACTTCTGGTAGAGCTGCTG
GTGCGTTAGTCGTGGGAGCCTCAGGGAGCGGTGCAGCGCGTCATAGTGGC
GACTTGAATGGACCAGATGTTGCTAAGACGACTAACGCTGCTGCTGTCGA
GGACAGTGCCAAGCCGCAGGTGGCACCACTAAAGGAGGACAAGGACATCA
TGAACTTTTTTCTCTTCCTTAAGATTGTGACATGGATATCTGCGATCTAC
ATGTCAGCCAGCACATGGGCTTTTTTCTACGAGCCAGACACAGGAGAAAT
CTGCCCGTACAGGTGAGTGACATGGATATCTGCGATCTACATGTCAGCCA
GCACATGGGCTTTTTTCTACGAGCCAGACACAGGAGAAATCTGCCCGTAC
AGGTGA
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