mRNA_H-paniculata_contig62523.14009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62523.14009.1
Unique NamemRNA_H-paniculata_contig62523.14009.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 9.750e-8
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   10 WVADSGATAHVTPSNELMFDYETCP-NLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGVTV 267
            W+ DSGATAH+TP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+  + ++G++V
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSV 346          
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.830e-7
Identity = 32/87 (36.78%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   10 WVADSGATAHVTPSNELMFDYETC-PNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGVTV 267
            W+ DSGATAH+TP  E +FDY+    ++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+  + ++G+ V
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 4.890e-7
Identity = 30/84 (35.71%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   10 WVADSGATAHVTPSNELMFDYETCPN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQG 258
            W+ DSGA+ H TP   ++ DY+T    + V  A G+   I G G + + ++ +G     +L +V HVPG+D+NL S  V++ +G
Sbjct:  306 WILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLSSNVLLGKG 388          
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.090e-7
Identity = 29/87 (33.33%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   10 WVADSGATAHVTPSNELMFDYETCP-NLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGVTV 267
            W+ DSGATAH+TP  + +F+Y     +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S+  + ++G++V
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSV 328          
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.390e-7
Identity = 29/87 (33.33%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   10 WVADSGATAHVTPSNELMFDYETCP-NLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGVTV 267
            W+ DSGAT H+TP  + +++Y T P +++V +A+G+ + + G G + +   D   I    +  V HVPG D  L S+  +  +G++V
Sbjct:  169 WLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGKSIR---MVEVLHVPGFDRRLLSVGKLADRGMSV 252          
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: A0A225VGX0_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VGX0_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.590e-7
Identity = 31/87 (35.63%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   10 WVADSGATAHVTPSNELMFDYETCP-NLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGVTV 267
            W+ DSGATAH+TP  + ++++ T P +++VT+A G+ + I G G + +   D   I    +  V HVPG D  L S+  +  +G++V
Sbjct:  232 WLIDSGATAHMTPHRDDLYEFSTMPADMYVTIAAGKKIRIAGTGSVRLKGIDGKSIR---MVEVLHVPGFDRRLLSVGKLGDRGMSV 315          
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.640e-7
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   10 WVADSGATAHVTPSNELMFDYE-TCPNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGVT 264
            W+ DSGAT+H+TP  E +FD E T  ++ VT+A+G+ L + G G + +   +   I    +  V ++PGLD  L S+  + ++G+T
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: A0A8J2P7A8_9HEXA (Hypothetical protein (Fragment) n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2P7A8_9HEXA)

HSP 1 Score: 54.3 bits (129), Expect = 1.550e-6
Identity = 28/76 (36.84%), Postives = 40/76 (52.63%), Query Frame = 1
Query:   10 WVADSGATAHVTPSNELMFDYETCPNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSL 237
            W  D+GAT H+TP  E    YE  P+ +   A G  +   G+G + V     G++ KF L+ V HVP +  NL S+
Sbjct:  214 WWIDNGATKHITPHREWFQTYEPFPSNYFVKAAGSRVAAVGHGSIEVASFVNGQLIKFDLTDVWHVPSISKNLVSV 289          
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: A0A4Y2F840_ARAVE (Uncharacterized protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2F840_ARAVE)

HSP 1 Score: 52.4 bits (124), Expect = 1.600e-6
Identity = 32/87 (36.78%), Postives = 46/87 (52.87%), Query Frame = 1
Query:    1 EEFWVADSGATAHVTPSNELMFDYETCPN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQG 258
            ++ W+ADSGA+ H+TP  E    YE+  +   V + N ET+   G G + V M   G+     LS V  VP +  NLFS+   V +G
Sbjct:    9 KDMWLADSGASVHMTPQKEYFLSYESFSSPKDVKIGNNETMFAFGLGTVKVRMLVSGKWENNHLSDVWFVPEVSRNLFSVSRAVDKG 95          
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Match: UPI0005F40DD4 (uncharacterized protein LOC105568084 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F40DD4)

HSP 1 Score: 53.9 bits (128), Expect = 2.130e-6
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   10 WVADSGATAHVTPSNELMFDYETCPNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGVT 264
            W+ADSGA+AHVT   E    +E+    F ++ANGE + I G G++ V     G+    +L +V  + G   NLFS+    + GVT
Sbjct:  252 WLADSGASAHVTGRREWFSQFESTSTKF-SLANGEQVSIHGRGEVEVECLVEGKWQSVTLKKVFFISGFKKNLFSIGAAGEFGVT 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62523.14009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A329SN38_9STRA9.750e-836.78Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA1.830e-736.78CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A535F6U2_9CHLR4.890e-735.71DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A225UGS0_9STRA6.090e-733.33Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A225V0K2_9STRA6.390e-733.33Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A225VGX0_9STRA6.590e-735.63Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A2P4XNP3_9STRA6.640e-736.05Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A8J2P7A8_9HEXA1.550e-636.84Hypothetical protein (Fragment) n=1 Tax=Allacma fu... [more]
A0A4Y2F840_ARAVE1.600e-636.78Uncharacterized protein n=1 Tax=Araneus ventricosu... [more]
UPI0005F40DD42.130e-637.65uncharacterized protein LOC105568084 n=1 Tax=Volle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62523contigH-paniculata_contig62523:117..386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930713.720111-CDS-H-paniculata_contig62523:116..3861622930713.720111-CDS-H-paniculata_contig62523:116..386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62523 117..386 -
1691481418.9305143-CDS-H-paniculata_contig62523:116..3861691481418.9305143-CDS-H-paniculata_contig62523:116..386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62523 117..386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62523.14009.1prot_H-paniculata_contig62523.14009.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62523 117..386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62523.14009.1

>prot_H-paniculata_contig62523.14009.1 ID=prot_H-paniculata_contig62523.14009.1|Name=mRNA_H-paniculata_contig62523.14009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
EEFWVADSGATAHVTPSNELMFDYETCPNLFVTVANGETLPIEGYGKMLV
WMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGVTVC
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mRNA from alignment at H-paniculata_contig62523:117..386-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62523.14009.1 ID=mRNA_H-paniculata_contig62523.14009.1|Name=mRNA_H-paniculata_contig62523.14009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at H-paniculata_contig62523:117..386- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACGTGACTCCGTC TAACGAATTAATGTTTGATTACGAAACCTGCCCTAATTTGTTTGTGACGG TGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTA TGGATGAAGGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGC GCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGGTTGTAGTGA AGCAGGGAGTTACTGTCTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig62523:117..386-

>mRNA_H-paniculata_contig62523.14009.1 ID=mRNA_H-paniculata_contig62523.14009.1|Name=mRNA_H-paniculata_contig62523.14009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig62523:117..386- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACGTGACTCCGTC
TAACGAATTAATGTTTGATTACGAAACCTGCCCTAATTTGTTTGTGACGG
TGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTA
TGGATGAAGGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGC
GCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACAGGTTGTAGTGA
AGCAGGGAGTTACTGTCTGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCT
ACGGCCCACGTGACTCCGTCTAACGAATTAATGTTTGATTACGAAACCTG
CCCTAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGAGG
GATATGGTAAGATGTTGGTATGGATGAAGGATCGGGGCGAGATACACAAA
TTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTTGTT
TTCCCTACAGGTTGTAGTGAAGCAGGGAGTTACTGTCTGT
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