mRNA_H-paniculata_contig6229.13979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6229.13979.1
Unique NamemRNA_H-paniculata_contig6229.13979.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6229.13979.1 vs. uniprot
Match: D8LT85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT85_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.640e-16
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:    1 PTQTELEELIVSILKKVSMRIASDPLSAIQTVQIVPPSLVLVAWAKLGSIKHTREFFGE----LDRIRPGMPVVVVGGHGDGEGL 243
            P Q +L +  V  +  V +RI +D  S IQTVQI+PPSLVLVAWA   S K  R+F G+    L  I+PG+PV VVGG  DGEG+
Sbjct:  636 PVQKQLADQFVRDIPNVEVRIVADVASTIQTVQIMPPSLVLVAWAAFSSAKFARDFLGDGARGLRGIKPGLPVAVVGGENDGEGM 720
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6229.13979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT85_ECTSI4.640e-1651.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6229contigH-paniculata_contig6229:10735..11901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_005630.1
Exons3
Model size330
Cds size330
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6229.13979.1prot_H-paniculata_contig6229.13979.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6229 10735..11901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930709.7473583-CDS-H-paniculata_contig6229:10734..108241622930709.7473583-CDS-H-paniculata_contig6229:10734..10824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 10735..10824 +
1691481417.0480015-CDS-H-paniculata_contig6229:10734..108241691481417.0480015-CDS-H-paniculata_contig6229:10734..10824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 10735..10824 +
1622930709.7646077-CDS-H-paniculata_contig6229:11221..113681622930709.7646077-CDS-H-paniculata_contig6229:11221..11368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 11222..11368 +
1691481417.0604606-CDS-H-paniculata_contig6229:11221..113681691481417.0604606-CDS-H-paniculata_contig6229:11221..11368Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 11222..11368 +
1622930709.7840831-CDS-H-paniculata_contig6229:11808..119011622930709.7840831-CDS-H-paniculata_contig6229:11808..11901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 11809..11901 +
1691481417.07043-CDS-H-paniculata_contig6229:11808..119011691481417.07043-CDS-H-paniculata_contig6229:11808..11901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 11809..11901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6229.13979.1

>prot_H-paniculata_contig6229.13979.1 ID=prot_H-paniculata_contig6229.13979.1|Name=mRNA_H-paniculata_contig6229.13979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
PTQTELEELIVSILKKVSMRIASDPLSAIQTVQIVPPSLVLVAWAKLGSI
KHTREFFGELDRIRPGMPVVVVGGHGDGEGLRIELETMGAGVVLLWPYKL
EDIKVCVIS*
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mRNA from alignment at H-paniculata_contig6229:10735..11901+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6229.13979.1 ID=mRNA_H-paniculata_contig6229.13979.1|Name=mRNA_H-paniculata_contig6229.13979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1167bp|location=Sequence derived from alignment at H-paniculata_contig6229:10735..11901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAACCCAGACGGAGCTGGAAGAGCTCATTGTGAGCATTTTGAAGAAAGT
GAGCATGCGCATAGCCAGCGATCCACTAAGCGCGATACAGGTGCGCATGG
CCACAATACGGAGATTTGTCTTTTCAGTTTTGTGACTGCGGAATGCACCT
AATTCGTTCCATTGTTCTATTTCCCTAAGTGTTCCATGTTTATAGAACTA
TGGCCAGCACTCTGATGTACTCGCAGCACTTTCGTCGTTGTTTCGAATCC
AACGTCTACAACGGGGTCGTAAGGTCTAACAAACAAGGAGGTTGTATCAT
CCTGGCAATTGTCGTGTATGTTTGCGTAAACAAGAACATGCCGAGTGTCG
AGACAGTTCTTCTCCATATTCAGAATACTTATAGCGCGAGTCATAGCCTC
ACCCCCCCCCCCCACGGCCCTCGCTATATCCCACCTGTACCGGATGCTTC
ACACGAAAACTTCAACATGGGTACCTGCTACACCAAGACCGTGCAAATCG
TGCCCCCGTCGCTAGTGTTGGTGGCGTGGGCCAAGCTTGGTTCGATTAAA
CACACACGAGAGTTTTTCGGAGAATTGGACAGAATCAGACCAGGGATGCC
TGTGGTAGTGGTCGGGGGTCATGGCGATGGCGAGGTGAATTACACCGTAG
AAGGAGGGTGAAGATGAAGGAGGGAGGTGGGCGGAGGTAGAGCGAGGGGT
GGGCAAACACGGGTAGCTAGTGAAGATCGCTGATGCCTTCCCGCCACTAG
TACGTCTGACCACGAGGTTCATGTCCCATAATCGTCGTGCTGATGGGAAC
GACGTAGTAGTGTAGCCGGGAATGTTGATCTAGAGTATTAGTACGCCTAA
GTTATCTTCACTAAAATTGGCATGCCTGAAACAACAGCTTTGGTCAGTCT
GCTGCTCTATTAGGTTGGGTCATGAAAGCTATGTAAATTCATCGTGCCTA
TCGCCTTGTACCCGACATGTTGGCTTTGTCCTCTACAAACACATTGTTCG
TTGAACCCCATTACTAACTCACTCGTTCCGCCATCATCTGGCTTTGGGAC
CACGCGTCATCGGCCGCCTTGTAGGGACTGCGTATTGAATTGGAGACAAT
GGGAGCTGGTGTTGTGTTGCTTTGGCCATACAAACTCGAAGACATCAAGG
TATGTGTTATTTCCTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6229:10735..11901+

>mRNA_H-paniculata_contig6229.13979.1 ID=mRNA_H-paniculata_contig6229.13979.1|Name=mRNA_H-paniculata_contig6229.13979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig6229:10735..11901+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAACCCAGACGGAGCTGGAAGAGCTCATTGTGAGCATTTTGAAGAAAGT
GAGCATGCGCATAGCCAGCGATCCACTAAGCGCGATACAGCCAACCCAGA
CGGAGCTGGAAGAGCTCATTGTGAGCATTTTGAAGAAAGTGAGCATGCGC
ATAGCCAGCGATCCACTAAGCGCGATACAGACCGTGCAAATCGTGCCCCC
GTCGCTAGTGTTGGTGGCGTGGGCCAAGCTTGGTTCGATTAAACACACAC
GAGAGTTTTTCGGAGAATTGGACAGAATCAGACCAGGGATGCCTGTGGTA
GTGGTCGGGGGTCATGGCGATGGCGAGACCGTGCAAATCGTGCCCCCGTC
GCTAGTGTTGGTGGCGTGGGCCAAGCTTGGTTCGATTAAACACACACGAG
AGTTTTTCGGAGAATTGGACAGAATCAGACCAGGGATGCCTGTGGTAGTG
GTCGGGGGTCATGGCGATGGCGAGGGACTGCGTATTGAATTGGAGACAAT
GGGAGCTGGTGTTGTGTTGCTTTGGCCATACAAACTCGAAGACATCAAGG
TATGTGTTATTTCCTGAGGACTGCGTATTGAATTGGAGACAATGGGAGCT
GGTGTTGTGTTGCTTTGGCCATACAAACTCGAAGACATCAAGGTATGTGT
TATTTCCTGA
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