mRNA_H-paniculata_contig6229.13978.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6229.13978.1
Unique NamemRNA_H-paniculata_contig6229.13978.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6229.13978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6229contigH-paniculata_contig6229:1107..1551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size214
Cds size192
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930709.6711144-UTR-H-paniculata_contig6229:1106..11281622930709.6711144-UTR-H-paniculata_contig6229:1106..1128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6229 1107..1128 +
1691481417.0226448-UTR-H-paniculata_contig6229:1106..11281691481417.0226448-UTR-H-paniculata_contig6229:1106..1128Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6229 1107..1128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930709.683355-CDS-H-paniculata_contig6229:1128..12391622930709.683355-CDS-H-paniculata_contig6229:1128..1239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 1129..1239 +
1691481417.0315528-CDS-H-paniculata_contig6229:1128..12391691481417.0315528-CDS-H-paniculata_contig6229:1128..1239Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 1129..1239 +
1622930709.6991925-CDS-H-paniculata_contig6229:1470..15511622930709.6991925-CDS-H-paniculata_contig6229:1470..1551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 1471..1551 +
1691481417.0396864-CDS-H-paniculata_contig6229:1470..15511691481417.0396864-CDS-H-paniculata_contig6229:1470..1551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6229 1471..1551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6229.13978.1prot_H-paniculata_contig6229.13978.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6229 1129..1551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6229.13978.1

>prot_H-paniculata_contig6229.13978.1 ID=prot_H-paniculata_contig6229.13978.1|Name=mRNA_H-paniculata_contig6229.13978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MKKSRLRREALNLRRRQFRESASVQVQTSTQQKRTIEVGNIMTDLHEIGD
LVELERAKVRYET*
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mRNA from alignment at H-paniculata_contig6229:1107..1551+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6229.13978.1 ID=mRNA_H-paniculata_contig6229.13978.1|Name=mRNA_H-paniculata_contig6229.13978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=445bp|location=Sequence derived from alignment at H-paniculata_contig6229:1107..1551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAGAGTTAGTGCGTCTGAATATGAAGAAGAGCAGGTTGCGGAGAGAGG
CGCTGAATTTGCGGCGACGACAATTTCGTGAATCAGCGTCAGTCCAAGTC
CAGACTTCCACTCAGCAGAAGCGAACGATAGAGGTAAGGCCTGGGCGAAG
AAGAGTACGCCCGTTTCCTGGGCCTGGCCTGGGCCTGGGCCTGAGCCTGG
GCCTGTGTATGCTTTCATTTCATGTAGACCTGATTTATTTCGTACTTCTG
CGCGCTGGTCCAGCTGTCGTGGTCTGAACAACATTGTTACACACTGCACT
TCTAGTCTTCTCGTACCAAATCTTTGCGTGGGGCTTCTCGTACTACTGCT
TGAATAAACGACAGGTGGGGAACATCATGACGGATCTTCATGAAATTGGG
GACTTGGTGGAGCTGGAAAGGGCCAAGGTGAGATATGAGACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6229:1107..1551+

>mRNA_H-paniculata_contig6229.13978.1 ID=mRNA_H-paniculata_contig6229.13978.1|Name=mRNA_H-paniculata_contig6229.13978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig6229:1107..1551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAGAGCAGGTTGCGGAGAGAGGCGCTGAATTTGCGGCGACGACA
ATTTCGTGAATCAGCGTCAGTCCAAGTCCAGACTTCCACTCAGCAGAAGC
GAACGATAGAGATGAAGAAGAGCAGGTTGCGGAGAGAGGCGCTGAATTTG
CGGCGACGACAATTTCGTGAATCAGCGTCAGTCCAAGTCCAGACTTCCAC
TCAGCAGAAGCGAACGATAGAGGTGGGGAACATCATGACGGATCTTCATG
AAATTGGGGACTTGGTGGAGCTGGAAAGGGCCAAGGTGAGATATGAGACG
TGAGTGGGGAACATCATGACGGATCTTCATGAAATTGGGGACTTGGTGGA
GCTGGAAAGGGCCAAGGTGAGATATGAGACGTGA
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