mRNA_H-paniculata_contig6227.13976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6227.13976.1
Unique NamemRNA_H-paniculata_contig6227.13976.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: D8LI59_ECTSI (Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI59_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 1.220e-127
Identity = 170/235 (72.34%), Postives = 199/235 (84.68%), Query Frame = 1 
Query:    1 PTAPGSGDSPPKGVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVNHKQKEFRMYYHALDPDSKKFRVGLATSQDGLAWDKLGPVFDGGPQGSFDEGGVERRRVVEVDGVYHMVYEGLNSEGVHALGLATSNDGVEWERNGDAPIFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGFPEKQEGQAGPA-----RSALGLAVATDNDLTSWTRIET 690
            P   G  ++PPKGV+MRIGVALSQDG+NWCRVEG+HP+GAC+DVGG GEWDRLFVGWPVV+NH +KEFRMYYHALDPD+KKFRVG+ATSQDGLAW+K GPVFDGGP+GSFDE G  RRR+V   GVYHMVYEG++ +GVHALGLATS DG++WER+ D PIFERS PGSGAWDAGGVSNPE+V+   G WYLYY+G+PEK+EG  G        SA+G+AVA  +DLT WTR+ET
Sbjct:  230 PVVCGDSNAPPKGVRMRIGVALSQDGLNWCRVEGEHPTGACVDVGGSGEWDRLFVGWPVVINHMEKEFRMYYHALDPDTKKFRVGMATSQDGLAWEKKGPVFDGGPEGSFDERGAGRRRIVMHKGVYHMVYEGVDKDGVHALGLATSKDGIKWERHSDQPIFERSPPGSGAWDAGGVSNPEIVETDGGMWYLYYSGYPEKKEGGEGEGAGVFGNSAIGVAVAVGDDLTKWTRLET 464
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BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: A0A7R9U2K4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2K4_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.210e-68
Identity = 110/224 (49.11%), Postives = 149/224 (66.52%), Query Frame = 1 
Query:   34 KGVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVN--HKQKEFRMYYHALDPDSKKFRVGLATSQDGLAWDKLGPVFDG-GPQGSFDEGGVERRRVVE-VDGVYHMVYEGLNSEGVHALGLATSNDGVEWERNGDAPIFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGF--PEKQEGQAG-PARSALGLAVATDNDLTSWTRI 684
            KG +M+IGVA+SQDG+NW R+EGD P+G  L VG  G+WD L+VGWP V+      KEF MYY + D   KK  +G+A   DG+ W K G +F G G  G+FDEGGV RR ++  + G Y M YEG++ +GVH++G ATS DG+ W  +GD P+FE S+  S AWDAGGVS+P +V MGD    +YY G+  P+++EG  G P + A+G+AV    D  +W R+
Sbjct:  204 KGAKMKIGVAVSQDGINWSRIEGDGPNGEALPVGEEGDWDSLYVGWPQVLPCVTSDKEFSMYYCSFDAIEKKHCIGMAVGTDGVKWTKKGKIFSGTGAPGAFDEGGVSRRHIIRGISGGYRMWYEGVSKDGVHSIGYATSEDGIAWTPSGDKPVFEPSAD-SEAWDAGGVSSPRIVRMGDESLRMYYVGYASPDREEGGNGKPKKGAIGVAVNLSGDGVTWERV 426
[Close]
BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: A0A7S2C6R2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C6R2_9STRA)

HSP 1 Score: 207 bits (526), Expect = 6.270e-61
Identity = 106/232 (45.69%), Postives = 148/232 (63.79%), Query Frame = 1 
Query:   37 GVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVNHK-QKEFRMYYHALDPDSK----KFRVGLATSQDGLAWDKLGPVFDGGPQG------SFDEGGVERRRVVEV---DGVYHMVYEGLNSEGVHALGLATSNDGVEWER-NGDAPIFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGFPEKQEGQAGPARSALGLAVATDNDLTSWTRIE 687
            G+++RIGVA+SQDG+NW RVEG+H SGA LDVG  GE+D L VGWP VV+++    FRMYY  + PD +    ++ +G+A S DG  W KLG +    P+G      +FD  G+ RR VV++   D  Y+M YEG+++ G HA+GLATS +G++WER NG  P+ E S+ GSG WDA  V +P +V M +G   +YYAG  E      G    ++G A    +DL+ WTR++
Sbjct:  226 GMEVRIGVAISQDGINWSRVEGEHASGAVLDVGKEGEFDHLMVGWPQVVDYRGDSSFRMYYQTMMPDPELGGTRYAIGIAESADGFKWTKLGQLKLTNPEGGASEENAFDARGISRRHVVKLENGDDTYYMFYEGISAAGRHAIGLATSTNGIQWERANGGQPVLEPSASGSGQWDAKAVGSPHIVAMPNGGLRMYYAGVTE------GTGECSIGCADGHVDDLSKWTRVD 451
[Close]
BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: UPI001ABAFE11 (glycosyl hydrolase n=1 Tax=Aetokthonos hydrillicola TaxID=1550245 RepID=UPI001ABAFE11)

HSP 1 Score: 194 bits (494), Expect = 2.130e-57
Identity = 100/226 (44.25%), Postives = 139/226 (61.50%), Query Frame = 1 
Query:   16 SGDSPPKGVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVNHKQKEFRMYYHALDPDSKKFRVGLATSQDGLAWDKLGPVFDGGPQGSFDEGGVERRRVVEVDGVYHMVYEGLNSEGVHALGLATSNDGVEWERN-GD---APIFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGFPEKQEGQAGPARSALGLAVATDNDLTSWTR 681
            SG    KG++MR G A+S+D +NW R+EG +  GA LDVG  GE+D LF  WP V+      +R+YYH  +PD + F VGLA S DGL W+K G +   G  GSFDE G+  R V++++G Y M YEG+N+ G H++GLATS+DG+ W++  GD     +F  +S GSG WDA  V  P +V M DG + +YY G  E    +   ++  +GLA++  ND   W R
Sbjct:  127 SGKFKAKGLKMRPGCAISRDCINWVRLEGSY-QGAFLDVGKVGEFDALFCPWPQVLPDDDGTWRLYYHTFNPD-RGFLVGLAVSTDGLRWEKFGEILQPGESGSFDERGIGTRHVLKINGEYVMFYEGVNTSGYHSIGLATSDDGIHWQKYAGDQAGGSVFSHASKGSGLWDARAVGTPCVVPMNDGSFRMYYIGANEGGHDELS-SQHQIGLAISDQNDFRHWHR 349
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BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: UPI00188264F8 (glycosyl hydrolase n=1 Tax=Nostoc sp. LEGE 06077 TaxID=915325 RepID=UPI00188264F8)

HSP 1 Score: 193 bits (491), Expect = 6.010e-57
Identity = 95/220 (43.18%), Postives = 138/220 (62.73%), Query Frame = 1 
Query:   34 KGVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVNHKQKEFRMYYHALDPDSKKFRVGLATSQDGLAWDKLGPVFDGGPQGSFDEGGVERRRVVEVDGVYHMVYEGLNSEGVHALGLATSNDGVEWERN-GDAP---IFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGFPEKQEGQAGPARSALGLAVATDNDLTSWTR 681
            KG+ MR G A+S+DG+NW R+EG++  GA L +G PGE+D LF  WP V+      ++MYYH L+PD K F VGLA S DGL W+K+G +   G  GSFD+ G+  R V++++G Y M YEG+N+ G H++GLA S+DG+ W++  GD P   +F  +   SG WDA  +  P +V M DG +++YY G  E    +   ++  +GLAV+   +   W R
Sbjct:  133 KGLNMRPGCAISRDGINWVRLEGNY-QGAFLGLGKPGEFDALFCAWPQVLPDDDGTWKMYYHTLNPD-KGFLVGLAVSTDGLHWEKVGQILAAGESGSFDDRGIGTRHVLKIEGQYVMFYEGVNTSGYHSIGLAISDDGIHWQKETGDQPGGSVFSHAQKNSGLWDARAIGTPCIVPMDDGSFWMYYIGANEGGYDELS-SQHQIGLAVSDGTNFRQWHR 349
[Close]
BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: A0A7S2STH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STH5_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.330e-56
Identity = 96/221 (43.44%), Postives = 134/221 (60.63%), Query Frame = 1 
Query:   37 GVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVNHKQKEFRMYYHALDPDSK--KFRVGLATSQDGLAWDKLGPV-FDGGPQGSFDEGGVERRRVVEVDG---VYHMVYEGLNSEGVHALGLATSNDGVEWERNGDAPIFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGFPEKQEGQAGPARSALGLAVATDNDLTSWTR 681
            G+ +RIG+A+SQDG++W R+EG+H + A LDVG  G++D L VGWP VVN   KEFRMYY +    S   +F +G A SQDG  WDK+G V F+  P   FDE G+ RR V++++     + MVYEG+++ G H++G+ATS +GV+W+     P+F  S     AWDA  V +P +V++  G   L+Y G        A     A+G A     DLTSW R
Sbjct:    7 GMSLRIGMAVSQDGLHWSRLEGEHANNAVLDVGKEGDFDELLVGWPQVVNFNDKEFRMYYQSSGGASSDDRFTIGWAKSQDGFKWDKMGKVNFERAPGSKFDEKGISRRHVIQLESNEDAFTMVYEGIDANGRHSIGIATSTNGVDWKSLSAEPVFAPSDDAD-AWDAKAVGSPHVVELPGGELRLFYVG-------TAMDGTCAIGSATGNVADLTSWER 219
[Close]
BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: A0A6P0R7W5_9CYAN (Glycosyl hydrolase n=3 Tax=unclassified Okeania TaxID=2634635 RepID=A0A6P0R7W5_9CYAN)

HSP 1 Score: 190 bits (482), Expect = 1.340e-55
Identity = 97/220 (44.09%), Postives = 133/220 (60.45%), Query Frame = 1 
Query:   34 KGVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVNHKQKEFRMYYHALDPDSKKFRVGLATSQDGLAWDKLGPVFDGGPQGSFDEGGVERRRVVEVDGVYHMVYEGLNSEGVHALGLATSNDGVEWERNGDAP----IFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGFPEKQEGQAGPARSALGLAVATDNDLTSWTR 681
            KG+QM  G A+S+DG+NW R+EG H  GA L  G PGE+D LF  WP V+      ++MYYH L+P+ + F VGLA SQDG  W+K+G +   G  GSFDE G+  R V+++DG Y M YEG+N  G H++GLA S+DG+ WE+   A     IF  +  GSG WDA  +  P +V M DG + +YY G  E    +    +  +GLAV+  ++   W R
Sbjct:  134 KGIQMLPGCAVSRDGINWVRLEGPH-RGAFLSPGQPGEFDALFCAWPQVLRDGSS-WKMYYHTLNPE-RLFLVGLAVSQDGFQWEKVGQILRPGEPGSFDERGIGTRHVLKIDGQYLMFYEGVNQSGYHSIGLAISSDGINWEKQPGAEVGGSIFSHAPKGSGRWDAQAIGTPCVVPMADGSFRMYYIGANEGGHDELS-TQHQIGLAVSDGSNFRKWYR 349
[Close]
BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: A0A7S1Y178_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y178_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.330e-55
Identity = 92/208 (44.23%), Postives = 131/208 (62.98%), Query Frame = 1 
Query:   34 KGVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVNH--KQKEFRMYYHALDPDSKKFRVGLATSQDGLAWDKLGPVFDG-GPQGSFDEGGVERRRVVEVDGV--YHMVYEGLNSEGVHALGLATSNDGVEWERNGDAPIFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGFPEKQEGQAGPARSALGL 642
            KG  ++IGVA+SQDG +W R+EG   +G+CLDVG  G+WD  +VGWP VVN    ++EF MYY + D   KK  VGLATS DG+ W K G +F G G  G+FDEGG+ RR ++  +G   + M YEG+++ G H++G ATS DG++WE      +   +     AWDA GVS+P +V M DG   +YY G+  ++     P + ++G+
Sbjct:  224 KGSNLKIGVAVSQDGTHWSRIEGGDATGSCLDVGPEGDWDHAYVGWPCVVNRVPTEEEFGMYYCSYDNIEKKHCVGLATSTDGVRWFKYGKIFSGSGAAGAFDEGGITRRHIIRTEGGDGFRMWYEGVDAAGKHSIGYATSKDGLKWEPASTEAVLAPAEDAD-AWDAAGVSSPRIVAMDDGSLRMYYVGYGNEEPAAGKPKKGSIGV 430
[Close]
BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: A0A6I9SXG6_SESIN (uncharacterized protein LOC105159987 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SXG6_SESIN)

HSP 1 Score: 191 bits (484), Expect = 9.480e-55
Identity = 101/228 (44.30%), Postives = 148/228 (64.91%), Query Frame = 1 
Query:   16 SGDSPPKGVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVNHKQKEFRMYYHALDPDSKKFRVGLATSQDGLAWDKLGPVFDGGPQGSFDEGGVERRRVV--EVDGVYHMVYEGLNSEGVHALGLATSNDGVE-WERNGDAPIFERSSPGSGAWDAGGVSNPELVDMGDG---RWYLYYAGFPEKQEGQAGPARSALGLAVATDNDLTSWTR 681
            +GDS  K ++   G+A+SQDG +W R+EG+H SGA LDVG  GEWD LF+  P VV H   + RMYYH+ D ++  F +G+A S+DG+ W KLG +  GG +G+FDE G+   R++  + DG Y MVYEG++ +G  ++G+A S+DG++ W+R  D+P+F++S    G WD  GV +P LV M DG    W LYY G      G+ G  RS +GLAV+  +++ ++ R
Sbjct:  240 NGDSS-KILKSLPGLAMSQDGRHWARIEGEHHSGALLDVGSDGEWDSLFIASPQVVFHGTGDLRMYYHSFDVENGHFAIGVARSRDGMRWVKLGKILSGGTRGAFDECGIVNARILRNKKDGEYLMVYEGVDGDGKRSIGVAVSSDGLQHWKRVQDSPVFKQSE--DGGWDCDGVGSPCLVQM-DGDTEEWRLYYRGI-----GKGG--RSGIGLAVSQGSEVNNFQR 456
[Close]
BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Match: K9Y8I0_HALP7 (Uncharacterized protein n=1 Tax=Halothece sp. (strain PCC 7418) TaxID=65093 RepID=K9Y8I0_HALP7)

HSP 1 Score: 187 bits (474), Expect = 1.950e-54
Identity = 97/225 (43.11%), Postives = 132/225 (58.67%), Query Frame = 1 
Query:   19 GDSPPKGVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEWDRLFVGWPVVVNHKQKEFRMYYHALDPDSKKFRVGLATSQDGLAWDKLGPVFDGGPQGSFDEGGVERRRVVEVDGVYHMVYEGLNSEGVHALGLATSNDGVEWER-NGD---APIFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGFPEKQEGQAGPARSALGLAVATDNDLTSWTR 681
            G+   KG++M+ G A+S DG+NW R+EG    GA L  G  G +D LF G+P V+      ++MYYH L+P+ K F VGLA S+DGL W+K+G V   G  G FDE GV  R V+ +   Y M YEG+N+   H +G+ATS+DG  WE+ +GD     +F  +  GSG WDA  V  P +V + DG WYLYY G  E    +   ++  +GLAV+   D   W R
Sbjct:  125 GNMKAKGIRMQPGCAVSGDGLNWIRLEGPD-RGALLPTGESGAFDELFCGFPQVLRENDGSWKMYYHTLNPE-KGFLVGLAVSEDGLQWEKVGEVLGSGSPGRFDERGVGTRHVLPIGNEYVMFYEGVNNSSYHCIGIATSSDGYHWEKQDGDEIGGSVFAHAPSGSGRWDARAVGTPCVVPLADGSWYLYYIGANEGGSDEL-TSQHQIGLAVSDGTDYGKWKR 346
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6227.13976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI59_ECTSI1.220e-12772.34Putative lipoprotein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7R9U2K4_9STRA2.210e-6849.11Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2C6R2_9STRA6.270e-6145.69Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI001ABAFE112.130e-5744.25glycosyl hydrolase n=1 Tax=Aetokthonos hydrillicol... [more]
UPI00188264F86.010e-5743.18glycosyl hydrolase n=1 Tax=Nostoc sp. LEGE 06077 T... [more]
A0A7S2STH5_9STRA1.330e-5643.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6P0R7W5_9CYAN1.340e-5544.09Glycosyl hydrolase n=3 Tax=unclassified Okeania Ta... [more]
A0A7S1Y178_9STRA2.330e-5544.23Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6I9SXG6_SESIN9.480e-5544.30uncharacterized protein LOC105159987 n=1 Tax=Sesam... [more]
K9Y8I0_HALP71.950e-5443.11Uncharacterized protein n=1 Tax=Halothece sp. (str... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6227contigH-paniculata_contig6227:296..8358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score374.4
Seed ortholog evalue3.8e-101
Seed eggNOG ortholog2880.D8LI59
Preferred nameSMYD5
KEGG koko:K01369,ko:K17770
KEGG TC3.A.8.1
KEGG Pathwayko04142,ko04612,map04142,map04612
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008757,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0031974,GO:0031981,GO:0032259,GO:0034968,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:1901564
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG2084@2759
EC3.4.22.34
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko02000,ko03029
Exons5
Model size693
Cds size693
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6227.13976.1prot_H-paniculata_contig6227.13976.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6227 296..8358 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930709.5122619-CDS-H-paniculata_contig6227:295..3811622930709.5122619-CDS-H-paniculata_contig6227:295..381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 296..381 +
1691481416.966954-CDS-H-paniculata_contig6227:295..3811691481416.966954-CDS-H-paniculata_contig6227:295..381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 296..381 +
1622930709.531569-CDS-H-paniculata_contig6227:3754..39211622930709.531569-CDS-H-paniculata_contig6227:3754..3921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 3755..3921 +
1691481416.9772415-CDS-H-paniculata_contig6227:3754..39211691481416.9772415-CDS-H-paniculata_contig6227:3754..3921Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 3755..3921 +
1622930709.5471709-CDS-H-paniculata_contig6227:4995..51161622930709.5471709-CDS-H-paniculata_contig6227:4995..5116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 4996..5116 +
1691481416.985538-CDS-H-paniculata_contig6227:4995..51161691481416.985538-CDS-H-paniculata_contig6227:4995..5116Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 4996..5116 +
1622930709.5623918-CDS-H-paniculata_contig6227:6814..69461622930709.5623918-CDS-H-paniculata_contig6227:6814..6946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 6815..6946 +
1691481416.9935706-CDS-H-paniculata_contig6227:6814..69461691481416.9935706-CDS-H-paniculata_contig6227:6814..6946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 6815..6946 +
1622930709.5773332-CDS-H-paniculata_contig6227:8171..83581622930709.5773332-CDS-H-paniculata_contig6227:8171..8358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 8172..8358 +
1691481417.001791-CDS-H-paniculata_contig6227:8171..83581691481417.001791-CDS-H-paniculata_contig6227:8171..8358Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6227 8172..8358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6227.13976.1

>prot_H-paniculata_contig6227.13976.1 ID=prot_H-paniculata_contig6227.13976.1|Name=mRNA_H-paniculata_contig6227.13976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=231bp
PTAPGSGDSPPKGVQMRIGVALSQDGMNWCRVEGDHPSGACLDVGGPGEW
DRLFVGWPVVVNHKQKEFRMYYHALDPDSKKFRVGLATSQDGLAWDKLGP
VFDGGPQGSFDEGGVERRRVVEVDGVYHMVYEGLNSEGVHALGLATSNDG
VEWERNGDAPIFERSSPGSGAWDAGGVSNPELVDMGDGRWYLYYAGFPEK
QEGQAGPARSALGLAVATDNDLTSWTRIET*
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mRNA from alignment at H-paniculata_contig6227:296..8358+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6227.13976.1 ID=mRNA_H-paniculata_contig6227.13976.1|Name=mRNA_H-paniculata_contig6227.13976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8063bp|location=Sequence derived from alignment at H-paniculata_contig6227:296..8358+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGACTGCTCCTGGATCAGGGGATTCTCCGCCCAAGGGCGTTCAGATGCG
CATCGGCGTTGCGCTCTCCCAGGACGGCATGAACTGGTGAGTGGATCGGG
TACAGCACCTACTCAATGTCAAGAAATCAGAAGCTAAGGGTTTGAGCCTC
AGATCGTTTCTTTTGAGTGTAGTTTGCTCTTTTGTGGTTGATTTTGTTTT
TTAACCAGACGAGTGATGGATCGCTTTTCGAGGATGCGCGTTATTTTTTT
CAAGCCCGGTGTTTTCTCTAAGCGTGCGGTGTTTTTTAAGCCTAAGTAGA
CAGCACACATTAAAACTCATCCAACAGAGAGTGATAATCAGGGCAGACTC
CTTTCCCATAACATGTCGACACTATGTGGCGTGTGGGGTTTGTGCGAAGT
TTTACCGCACGGCGTGGTAATCAAAGCTGTCGCGACTCTCGTGTTGGTGA
TAGCAGAGTGTGCGAAGCGTATTGATGTCAATTGAACTCTACAAACATGC
GACTTGGTCATAATCCATTTACGATACGCAATACATGGGTGAATTTGTTT
TATGCTTGGCTTTACGACCTATACGCGATTGATTGCTCCTGCAGATAAGA
TCCAAAATAAGTGGACCATTAAAGGTTACCGGCGACTATGTACCATGCAC
GAAAAGGCGGCCTTGCGCCCAGAGCTACTGTCGCTGACTGAGACACACAG
ACACACGGGCACACGGACACACGCACACATCGATCGTTCACGTTTATCGT
AGCTGCCGGATCATGCCGGCGGCACAAAACGTATTCCTCCTTCCTTTGAT
AACCCAGTGGATATATATAGCACACGACTTCTCAAGACACTATCATCGCA
TTTCACACAGAGTATCTATTGTGAACGCTTATGACGTCACTGACGGCCTT
CTCGTGGGCTCCTCAAATCAAATGTGGGCCTAGTGTGTGTCTGCGGGGCG
AGGGGGAAGTTATGTCCTAACGCTCATTAATTCCAGATCGCTCGCGGATC
GATCGAGTTTGCGTGCTTTGTGCCATCTGGGTGAAGCTGTCGTGATGGCA
AGTATATAGTAATGGGTTGACGGGGCACGTAGGAACGGCCCCACCACGTC
GATAGCACTATATCCCGTCCGCTCTGTGGAGTCCAGCGGCGTCGGGCTAG
GTTAATACTATTGTTATGGACCACGTGGGAAATCCTGGTGTTGTTTCTTT
TTTTCAAGGGTTGACGGTTTTGCTGGTATTTTTCTTGTGGGTTTATGTAG
CAGGGTGTTGTTGGGGAAGGAAGGAAGGGCTCGGCGCAGCATTCTAACTA
CTCCGAGTGGGAGGGACCAAGACATTCACTTTGATGGTCGCGGAGGGGGT
TCTCAGAGGGGGGGGTGCACTCAAGCTGCTGAATTACGTATCTACAAACT
GAATAAACTAATGGGGGTATTTTTTTCTCTTACGTTTTTTTCAAATGGAA
TATTCGTCGAAAAGTTCGAAATTCGAAAATGCGATTACAAAGCTAAGTAG
AACCTGAAGAAAATACGTCGAAGATTACCTAGACGGTACGCTTCATTACG
TGATCAAAAGGGGGCAGGGGGGAAGGATGGGGGGGGGGGGGGTTAAGGTG
GTGACGTTTGTTCCGTGACTTGGCTTCGTTAGGAGAATCCATCAGATAGC
GTGTGTCTGTCTGCCTTTACCCTGCCCTGACCCGTCGTGTCTGATGGGCC
CGCGAAAGCTCGCTTTTTGTATCAATTTCTGGCAGGGGTTTTCTCGGAAT
TGCTGCGTATATGTAAAACCACATACGAAATGAGTACCGTTGGGAAAAAC
CAGGGGTGCTCTCAGTAACAGTATTTCCAAAACGAATAAACGGGACGGTA
CATGATTTCCTCGAGTCAAATCAACCGTGGAGTTTGTTTTTTTGGCGAAA
GACGGTCGTTGGTAAACAAGCCCCGTCTTCATAGATGGACATTACAAATT
CTTGGTTTGATTCCGACGCAAGTCGAGCTTGAAAAACAATCATTCCCCAG
GACGATGTGATGTGTATATATATATATATATATACAGACTGTCGATAAGT
AAACTATCTGTCATGACATGATATTCTTGGATCCCTATATCCCCGTAGTC
GTGTCATGGGCGTCGTTTTACCTGTTTGTTCCACGTGGGAATCAGGCAAG
GGTTCTGTGTAGACTGAACCGGACCGAATCCGAACGCGACCGACCGAACC
GGACTGCAGCCTCCTATTGCCTTGTGCCATGTACCGCCGCGATGCTGAGC
TGAATCAAATTCCGTTGAATCGTTTTTTGTTTTCAATTTTCAGATACCGT
TTCTGGGGGAAGCCCTTAGATTTATATTCCCAGTGAACTGTTGAAAGTAT
CCTTCGCGTACATGTATATGTATTTGTTCACTCCTGTGCATCGTTTTCGT
GTTTTGCGAGGCCGCTGTCCCCTGTTCATCAACCCGGCGTCGAAAGCATG
TCAACCTTTCAAGTGTTTGTACCTTTTATTCGCTCTCCTTTACATCTTTT
TGCTAAAAAGCGAAGCTCCGCGTTTACTTATTAATAAGAAAATTCTGTTT
ACCTTTTTTGCTGAAATCAAACCCGACAGACTTTTTTTTAATGTTCGTAA
CATTTGATTGTTGTCATCCAGCTAAATAGTTAACGGCTGCATCCGAAGTT
AATCGTCCGAGTCAGATTTGCACGCGGTCAACCTTGGAAATCTATCATTT
TCCCTCTCTTCTGCGTACCTTCTTCAGCTTTCTCACACCTGTTGTCGACC
AACAGGCACCCCCCCAATTTTTATATTTCAATGAATTTAGATTAAAAATC
GTCTAGCTATTAAAAGGCTACTGTTGCGCCGTATATTATTCGCCAAGTCA
ATTTTTGCACAAGTCAACCTTTATCCCGCATATATATATATATATATATA
TATATATATATATACATATATATCTTCCCGATTGTGTCAAGTAGTATCTC
GTACTGTGATGAGGTATTGCCCACACAATGGAATAACCGTCTACTTGGTT
CGGCCGAACCGGGGTGGCGCCTACCCCGCAGAGGAATAAATAACTCTGTT
CTGTTAAAGGAATGTAGACATACTTTGGTAAAATACTTGGAGTATGGAAG
CATCGGCAAAGGTTTTTGCCTCGGTCTTCCGGGGGTTAAAAAAATTAATA
AATGGAATATATTATCCCTACATAATACTTTATTTTTTACATGTTTGCAA
ATGCCAATTCCGAGGAGGGCCCTGAGATTTACCACGTTACCCGTCCAAGT
TTTTTCCCACTCGCATCCCCACCCCACTGTGCGCGATCGCTATCGGAAGT
CGCTCTGATAGGAGCAAAAAAGTCCAGTCCTCTCGAGGACGTGTGGTCAA
TGGTCTAGGAACTACGGCATGCATAACATGAACGTGCCCCCCTCCCCCTG
TGCACTTATCTCACCTTCTCATAACCGCTGTCCGCGCGCGTCGTCGTACC
ACCGGGCAGGTGCCGGGTGGAGGGAGATCACCCAAGCGGCGCGTGCCTAG
ACGTCGGTGGCCCCGGCGAGTGGGATCGGCTTTTTGTTGGTTGGCCCGTG
GTCGTTAACCACAAACAAAAAGAGTTCCGGATGTATTACCACGCTCTGGA
CCCGGATTCAAAGAAGTTCCGCGTTGGTGAGAGAGAGGGAGAAAAATACA
GAGACAGAGAAACGGAGATAAGAGTTAAAGAGATGGGTCGACGAGATGGG
CGAACCGCAGCTGCTTGGTCCACTATGATTTAGAAAATCCCGAGAGAGAA
AATTTATCCGCTCGGAGAATGATGTCAACGCCGTGGATGACGTCACATAT
CGCCGTATAGTAATTGTCGAGATAATTGCGTTTGCAAAACGCTCGCACCT
TGGTGCGATAGGAAAGGCTATTGCGGTATACATGTGTGTGGGTACAGCTA
GCTGACCTTGTGCTCCCTCTGTGCCATAAATAATGTCGGTTGTGTTTGGC
AGATGAAATCTTTAGATCTAAGACGATTCAGAGGCTGCGGTTAGAATCGT
TGGGAAGCTGAAATGTAATAGAGTTACATGGGCTATTCCGAAGTACATTC
CGATGTCTTTGTCAGGATTATTGGCTGCTCAAGGTTGGCCTAATTTTGAC
CATTTTCATTTTTGTTTCGATTTTAACGTTTTTCCAATAGAAAAACAAGA
AAAGGGGGCGAAAATTTGACTTTTTTTTGGCCCACATTTGTTTGTGTGCC
ACGCGCGCTCCCGATGGATTTCGCCAATATCCATGAAATTTCGGGGTTAA
CCCCAAAAACATGAAGGATTATTTATCGAAAAGGAAAATAATGGGAGATG
AATACGCGCCTCTATAAACTCAACCGACCCTACTTACGGCACGGAGGGAG
TAGAGCTAGTATCAGCCGTTTAGGCTTGCTTTTCTTTCTTAGGTTTCATG
ATTTTCCACGTATCTCTCGTATTCGATTTGTCGCATGTATACCATTTTTC
ACATCCATATGGGAAACGGTAGCCCTAGTCGTACGGTTAGTTTTGGCAAT
ATGGGCTTCCTTGTCTTCCTCGAGCGATTTTTCCCGTATTTCATGTCTAG
CATACTTAATGTCCACACCCACATGGGAAACGCCTACGCAGCCAATCCTT
GACCTCCCCCCTCCAAAACGCGGCATTTTTTCGCGCGTTTTTTTCTTGTT
CCTGTTGCACTTGATTGGACCTCCTCCCCTTTGCATCGATGATCCCCAAG
GCCTCGCTACCTCTCAGGATGGGCTCGCGTGGGATAAGCTAGGCCCTGTG
TTCGACGGCGGACCGCAGGGTTCGTTCGACGAGGGCGGGGTGGAACGGCG
CCGCGTTGTGGAGGTCGACGGGTACGTGCCGGCGAAGGAATGTTGGATCA
TGAGAAATTCAAGCTGAGCAGGCTCGTCGCTCTTGAAACCAATCGAATTG
TTTTCCGTTTGTTATTTTTCGTATGATGAATAACAAGAGTAAAGTGAAGG
AACAAGATGAGGATTAAAAACAGGGAAACGTTGATGGAGTACTTGAAGAG
CTCTACCGTAGTTTGTTTACAGTGTACATCACAGTACAAGAGAACAGCCC
TGTACCAGGTGAGGGACCACAGTTTTGTTTTTTTATCCCACTAGGTGGAC
TCGATCGTATCGCACGTACTTTGTTGCTTGCATCCGCATTTCTCTATGCT
GTACACATGAGAGCAGGATATCCACCATGTTGCAAAAATTTAGGCATGCA
AAAGCGTAGGCTTGGGACGGGGATAGCAAGAAATACCAAGGTAATCAGAA
GTGTTTGTATTTACGTGCGTGAGAGTAGCGGAGCTGGGGGTCTTCGAGCG
GGATTTGCCAGAAGTTTGGTACACGCGAGGAGAATAAATTGTTGAAAATC
TTGGCGGCGGCCTGTCAGCTATTAGCCTGGAAGAGGCCGCTGGAATAGAG
GTTGTCAATGGTTGAAAAAGAACCGGTTAACCGCCATCCGGCTATTCCGG
TTATTTGGTTTCTACTCGGTTAATCGGTTCCCAAAACAAAGAAGAACGGC
GGGATTTTTCACCGGAATACTGGAAAAATGTGGAAGTCGGCGCAGCGGAA
AACCGGAAATCGCTGCTGTGTATTGGACATCGAAACAGGCAAAGTCTGGT
ATACTAAGCGAATTTATGCACGCACCCGCAGCCGAACGAAATTGCCAGAA
CAGCAGTGGCACTAGTTTTCTGCAAGCATTCGTTGTCTGTCCATGAATAA
AGGGTGGTCATTCTCCAGTCGTCATTTTTTCCATCACTCCATGATTGCGC
CACCAATTCACCACTTACCACACTCCATCATTGCTTCATCAAACACAAAC
AAACCGGTGAATTATCCCAGCCCAGACCATGGCCAAACGAAAGGCTGTCG
ATGGGGCGACGTTCGGTCTTGATGTGTTGTTCGGGTTATTGGTCATTAGC
CCTAGCCTTTGTTGGAAGGCACAACAACAATATTGTAATGTACTCTCGAG
TTTGGATATTTCCAACAACACACATCGCAAAATATTCTGACCAGCGAAGG
AGTGATAAAGGTGTGGGGCCCATTTTTCTCCGACACGGCGGCTGTCCCGT
TCGCCGGCTTACCCAGTTTTTCGTTGCACCGACCAAAATCACCCAGTTTA
AAGCATCGGTTGTTGCTCGAAAAGACACTGACCGGTTGTTCCATTCTTTT
TCAACAACGCCTGCTAAAAACGTGTTTTTTTCCCGTACCGGTGACAACTT
CTACGCTGAAGCCCCCCCTCAGGAAGGGCGGTCCGTGTGCAGGGACCTTT
GGAGGAAACATTTTGGCGGAAAAAACGATTCAAGCATTTTTTTTCTCTTA
CGTCGAAATTTTTCGGCGGGCCCAAAGCTGTTGTCGGCCGAAAATACTTT
TCCCCAAAGATTTGTGGAGGTTCTGCCAACATAGGGCTCCATTTCCCCCC
TGATGCACAGCTTGTTTATACCGAAATTTCTTCACGCTTACAAATTTACT
CATTTTCTCTCGTGTGATCGCATCATTTTGTGCGACTTGCGAAAACCGGC
CGATGTTTGTCGGTTGCAGCGTGTACCACATGGTTTATGAAGGATTGAAC
AGCGAGGGAGTGCACGCATTGGGCCTGGCTACAAGCAACGATGGCGTCGA
GTGGGAGCGCAACGGTGACGCCCCCATCTTCGAGCGTAGCTCTCCGGGCA
GGTGATGAAATTCTTGCTACAACAATAGGGATAGTATTGCCATTAATAAC
GACGATAATGATAATATTCCAGAGGGGACCCCAACTTTAGGTGGGTCATT
GTTCAGGCGTAAGTTAAAGACGGTTAAATTTGCTCTAGTCACTATAAGAA
GATCCCGCTTTTATTTCCCGCACAATTTTTCATTTTTTTTTATGAACAAA
AAACAGTTTTCGATCCAAGGCGCACGTTTCTGGCGTGTCATCATCCCCGG
CTTGAAATCGGGGTAATACCAAGATATGAGGGGATATTCAACTGTATACT
TTTTGAACCAAGCATTGATCATTTTCCACGATATAGAGTTGATTGTTTGG
GTTTTAACAATCGAAGAATACAGTCAACGAAACAAGAAATGATCACTTTA
AATTGGGTTCAACGTGGGCAAGTTATTAGGCACGACTTGGTCAACGATAT
CCTGCATTATGATCACCAGTTTCGTTGAAACGATTTTCATCAGTTAATCT
TGTAATTTTGGCCAGCCGGTTCTAATTCTCGTTAATCCTAGTACGGTCCC
AATCCGGTTCTGTCGAACTTGTGGCCGCTTCAGGATTATTTGTGTGGGGT
TTTATGGCTCATTGTAGGAAAGCCTTGGGGTACGTAATTAACTTGACGTA
ATTTTTCTGACTTTGCTAGCTCCACAAGCGCTGTTTTTTGTTTATTCCGT
ATAAACATGGCGATTCTCGCGCATGGTAGTATTCGTATGGGTCATTTTTT
GGTTGGATCACCTCAAACATGCGTTGAAATTGTGGTTAACGAGATTTACT
TATTTGGAAAAGGGGCGGACGGGGATTGCGTCCTTGGGTTTTACATGGCC
TAGCTGTTAGGCCATTGATGATGCATCCTCGGGAGGACAGAGCATGGGCC
AGGGGGGGGGGGAGGAGCAGTTGGCAATTCAGTAATATTCGTATAAGAAC
TCCATCGTAGCGATGTTGAGGTCATGGAGATGACCTCCAATCTCAGTTGC
GTACCTACACGTTGGTAATGCCAAAAATTGATCAAATCTAGGGGCGGTAG
CAGTTGTTACATACAGCACTTGAACTCCTCACGTGCGACTAGTCCACTGA
GTGCGCGTAGCCGTGGTATTCCATGTTTCATCGGACAAGGTTTTTCCAGC
TGGAAAGATCCAAATGAGACTTGGCGTCAGGAATTAAATTGCGCTCCTTT
TTTTTTTTTTTTTGTCCCACTCCCAGTGGAGCGTGGGATGCCGGAGGCGT
TTCGAATCCCGAGTTGGTGGACATGGGTGACGGCCGGTGGTATCTTTACT
ACGCGGGATTCCCGGAAAAGCAAGAGGGCCAGGCGGGGCCCGCGAGATCA
GCGCTAGGCTTGGCGGTGGCCACGGACAATGACCTTACCAGCTGGACTAG
AATCGAGACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6227:296..8358+

>mRNA_H-paniculata_contig6227.13976.1 ID=mRNA_H-paniculata_contig6227.13976.1|Name=mRNA_H-paniculata_contig6227.13976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at H-paniculata_contig6227:296..8358+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGACTGCTCCTGGATCAGGGGATTCTCCGCCCAAGGGCGTTCAGATGCG
CATCGGCGTTGCGCTCTCCCAGGACGGCATGAACTGCCGACTGCTCCTGG
ATCAGGGGATTCTCCGCCCAAGGGCGTTCAGATGCGCATCGGCGTTGCGC
TCTCCCAGGACGGCATGAACTGGTGCCGGGTGGAGGGAGATCACCCAAGC
GGCGCGTGCCTAGACGTCGGTGGCCCCGGCGAGTGGGATCGGCTTTTTGT
TGGTTGGCCCGTGGTCGTTAACCACAAACAAAAAGAGTTCCGGATGTATT
ACCACGCTCTGGACCCGGATTCAAAGAAGTTCCGCGTTGGTGCCGGGTGG
AGGGAGATCACCCAAGCGGCGCGTGCCTAGACGTCGGTGGCCCCGGCGAG
TGGGATCGGCTTTTTGTTGGTTGGCCCGTGGTCGTTAACCACAAACAAAA
AGAGTTCCGGATGTATTACCACGCTCTGGACCCGGATTCAAAGAAGTTCC
GCGTTGGCCTCGCTACCTCTCAGGATGGGCTCGCGTGGGATAAGCTAGGC
CCTGTGTTCGACGGCGGACCGCAGGGTTCGTTCGACGAGGGCGGGGTGGA
ACGGCGCCGCGTTGTGGAGGTCGACGGGCCTCGCTACCTCTCAGGATGGG
CTCGCGTGGGATAAGCTAGGCCCTGTGTTCGACGGCGGACCGCAGGGTTC
GTTCGACGAGGGCGGGGTGGAACGGCGCCGCGTTGTGGAGGTCGACGGCG
TGTACCACATGGTTTATGAAGGATTGAACAGCGAGGGAGTGCACGCATTG
GGCCTGGCTACAAGCAACGATGGCGTCGAGTGGGAGCGCAACGGTGACGC
CCCCATCTTCGAGCGTAGCTCTCCGGGCAGCGTGTACCACATGGTTTATG
AAGGATTGAACAGCGAGGGAGTGCACGCATTGGGCCTGGCTACAAGCAAC
GATGGCGTCGAGTGGGAGCGCAACGGTGACGCCCCCATCTTCGAGCGTAG
CTCTCCGGGCAGTGGAGCGTGGGATGCCGGAGGCGTTTCGAATCCCGAGT
TGGTGGACATGGGTGACGGCCGGTGGTATCTTTACTACGCGGGATTCCCG
GAAAAGCAAGAGGGCCAGGCGGGGCCCGCGAGATCAGCGCTAGGCTTGGC
GGTGGCCACGGACAATGACCTTACCAGCTGGACTAGAATCGAGACGTGAT
GGAGCGTGGGATGCCGGAGGCGTTTCGAATCCCGAGTTGGTGGACATGGG
TGACGGCCGGTGGTATCTTTACTACGCGGGATTCCCGGAAAAGCAAGAGG
GCCAGGCGGGGCCCGCGAGATCAGCGCTAGGCTTGGCGGTGGCCACGGAC
AATGACCTTACCAGCTGGACTAGAATCGAGACGTGA
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