mRNA_H-paniculata_contig6226.13975.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6226.13975.1
Unique NamemRNA_H-paniculata_contig6226.13975.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6226.13975.1 vs. uniprot
Match: A0A6H5JF13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF13_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.650e-27
Identity = 71/144 (49.31%), Postives = 90/144 (62.50%), Query Frame = 1 
Query:   28 VGDREPAAVTVTESADGSVVVATVSVRCSPSDIQQEEERVYRVFVAPGPSFIADARTNXXXXXXXXXXXXXXNKKSNVELPFVGTSFSYIVTSSGSEPPFPSITANDVGTVDVVGSGGSGTGRTYVIVLNAVDTIHILEVALRT 459
            +GD EPA+V VTES+DG +VVA VS      ++Q++E+RVY VFVAPGPS++A                      ++ E PFVG +FSYIV  SG  P  PSI A+DVG VD  G+ G+G  R YVIVLNAVD I ++EV L T
Sbjct:   96 IGDEEPASVAVTESSDGFLVVAVVS----RVEMQEDEDRVYHVFVAPGPSYLAAVN-------------------ASAETPFVGAAFSYIVPGSGGAP-VPSIAAHDVGGVD--GAAGAGEERVYVIVLNAVDAIRVVEVRLHT 213
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BLAST of mRNA_H-paniculata_contig6226.13975.1 vs. uniprot
Match: D8LIF3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF3_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.470e-27
Identity = 70/144 (48.61%), Postives = 90/144 (62.50%), Query Frame = 1 
Query:   28 VGDREPAAVTVTESADGSVVVATVSVRCSPSDIQQEEERVYRVFVAPGPSFIADARTNXXXXXXXXXXXXXXNKKSNVELPFVGTSFSYIVTSSGSEPPFPSITANDVGTVDVVGSGGSGTGRTYVIVLNAVDTIHILEVALRT 459
            +GD EPA+V VTES+DG +VVA VS      ++Q++E+RVY VFVAPGPS++A                      ++ E PFVG +FSYIV  SG  P  PSI A+DVG VD  G+ G+G  R Y+IVLNAVD I ++EV L T
Sbjct:  164 IGDEEPASVAVTESSDGFLVVAVVS----RVEMQEDEDRVYHVFVAPGPSYLAAVN-------------------ASAETPFVGAAFSYIVPGSGGAP-VPSIAAHDVGCVD--GAAGAGEERVYMIVLNAVDAIRVVEVRLHT 281
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6226.13975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JF13_9PHAE2.650e-2749.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIF3_ECTSI4.470e-2748.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6226contigH-paniculata_contig6226:1929..4566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size475
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6226.13975.1prot_H-paniculata_contig6226.13975.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6226 1929..4545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930709.404283-CDS-H-paniculata_contig6226:1928..19581622930709.404283-CDS-H-paniculata_contig6226:1928..1958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6226 1929..1958 -
1691481416.9331686-CDS-H-paniculata_contig6226:1928..19581691481416.9331686-CDS-H-paniculata_contig6226:1928..1958Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6226 1929..1958 -
1622930709.4222045-CDS-H-paniculata_contig6226:3440..37881622930709.4222045-CDS-H-paniculata_contig6226:3440..3788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6226 3441..3788 -
1691481416.9426484-CDS-H-paniculata_contig6226:3440..37881691481416.9426484-CDS-H-paniculata_contig6226:3440..3788Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6226 3441..3788 -
1622930709.438657-CDS-H-paniculata_contig6226:4470..45451622930709.438657-CDS-H-paniculata_contig6226:4470..4545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6226 4471..4545 -
1691481416.950455-CDS-H-paniculata_contig6226:4470..45451691481416.950455-CDS-H-paniculata_contig6226:4470..4545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6226 4471..4545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930709.4632-UTR-H-paniculata_contig6226:4545..45661622930709.4632-UTR-H-paniculata_contig6226:4545..4566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6226 4546..4566 -
1691481416.9582293-UTR-H-paniculata_contig6226:4545..45661691481416.9582293-UTR-H-paniculata_contig6226:4545..4566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6226 4546..4566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6226.13975.1

>prot_H-paniculata_contig6226.13975.1 ID=prot_H-paniculata_contig6226.13975.1|Name=mRNA_H-paniculata_contig6226.13975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MEVGDREPAAVTVTESADGSVVVATVSVRCSPSDIQQEEERVYRVFVAPG
PSFIADARTNNNDNNNNTMEDDNSNKKSNVELPFVGTSFSYIVTSSGSEP
PFPSITANDVGTVDVVGSGGSGTGRTYVIVLNAVDTIHILEVALRTGREC
S
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mRNA from alignment at H-paniculata_contig6226:1929..4566-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6226.13975.1 ID=mRNA_H-paniculata_contig6226.13975.1|Name=mRNA_H-paniculata_contig6226.13975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2638bp|location=Sequence derived from alignment at H-paniculata_contig6226:1929..4566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGGGTTTGGAGGTCTGCGAATGGAGGTAGGCGATCGGGAACCGGCGGC
AGTTACGGTTACGGAAAGTGCTGACGGCAGCGTCGTCGTTGCGACGGTGA
GCGTTTTTGTCGTAGCTGGACGCTTGTACACATTCAACTAGTATTTAATC
GTCTGAAATGACTACCCACGACCCTTCAACCCTGGTAGAAATGAAGCTCC
TCGTTTCTCCGGTCCTTTTAATATTTCACGCTTCGAGATCATATGCGTTC
ATGCTGTTGTATGTGGCAGCCGATCCTTTTTTCAGTTTGACACCTGTCGG
AGGTCGATATTTTGGTCTCTTGGAGCCAACACGAACTTCGGCGTTGAGTT
GCGCGTTGCAGCTTAGGATGTACAAAAACCCACTGATTGCGGATGGGCTT
TGTCGAACGCTGACACTGGATGCATTCATGGGAACTATCCCGATGCTTGT
TTGGAGTCGTGATCAGGGGACCTATTCGAGAGCAAAGTGCGGCTATTTTG
GCATTTTGTTGTTGTTGCGTGCATGTTTTGTGCAATTTCGCCCTATTTTA
TGCGTTTTTCAAGTGAGAGGTCCAAATGAAGCTGTCTGCAGAGATGATGG
TCGTTGAAAACTACGCTCCACACGGGGAACTGTACCCCACCGAGTCCACT
CACTGCCCATGAGCACTCACAGTGATCAGGAGTTCCTTACACAAGTACCC
AGTACCCTCTCATGGCGTGTGCCGCCCTGTCCGTGACAACCAACGACACG
GTTACCAATACAACAAACGAAATTGCAGGTGTCAGTCCGATGCTCTCCAT
CAGACATTCAGCAGGAAGAAGAGCGCGTGTATCGCGTATTCGTCGCTCCC
GGCCCATCTTTCATCGCCGACGCCCGAACCAACAACAATGACAACAATAA
CAACACCATGGAGGATGACAATAGCAACAAGAAGAGCAACGTGGAGCTCC
CCTTCGTCGGCACGTCGTTCTCGTACATCGTCACCTCTAGCGGCAGCGAG
CCTCCGTTCCCGAGCATCACGGCAAATGATGTCGGGACGGTCGACGTCGT
GGGTAGCGGTGGTTCTGGGACGGGCAGGACGTACGTGATCGTGCTGAATG
CGGTTGACACCATCCATATTTTGGAGGTGGGGTGGATGTGGTTGGATTGC
GAGGGAGGGGGGGAGGGGGGAGGGGAGCAGGGGGGGTACTAATGTTTTTC
ATGCCCTAGTTACTAGACCATTCGCCATGCGTCCTCTGGAGGACGGGAAC
GTGTTCTTATCAGAACGATTTCCGAGGTCTGTATCGCTCATATGTGTAAC
GTGTATAGGCATTAGGCCTAGCGTTGCAAGAGGGAGAAGTGACAACAATA
TTCCCATGATCACGCTGAACAGAACCCCCATATAGAAATAATTATATATA
TATATATTTTTTTAAATGGCCACATGCGCCGGATTCGCGAGCTGAGGCGT
GGCTCGCGTTTTGCAGAGGTGTATGGTTCCGTCGCTCCAAATCCTCACGA
CACCCCCCCCCACACACACACACACATAAATTATGCTGAACTGGCTCATC
TCCTCTGGGTCTCTTTTTCGCAGCATCACAAAGTTAGTTTATCGACCCAT
GAACAAGACGAGAGCCGTTAACGCCGCCAAGAAGGCGTCCGCTCCCGAAG
AGAAAGAGGTGGAGGGGACGTCGGCAATCGTGATGGACCCGCAAGTACGG
GTAGTGAGGAAAAGGGAAAGCCATCGAAACCAACATCAAGTTACAGTTGT
GGATCTGTCCTACGTCAGTCCCAACGTTCTGGTCCTCAACAACTGTTCTC
ACCCGCTGAAACTTTACGAGCTTATTATCGGGCCCATTGAGTATTGTATA
CCGTGGTGGATGTGTACACTGACGCGCGACTGCGCGTGAGTGGATGTAAT
AAACATGAGTGACAGGAGACGCAGCAGTGACAGGAGCTTTTTTGTTTCCA
TAAGCGAGCGGGTTGATTTTAACCGATACACGAGTGAGTGACGAGAACGA
ATCAGAAAGCGACAGACCCCAACAACAGGAGGCCGACGTAAAATTCGCAA
CTCATCGTAAACACAACAGCAATGTACTAGCTGTGCACATGCACCATATG
TATACTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGTGCTGACTGGACTGC
ACATTACTATCCTGTACCGCTGAACTGCGCTCCACGTTTTCGGACCCATT
CGGAAGTGTTGAATTGCATCAAATAATAAGAATATACAGTATCATGTAGA
ACATGTAGCATACTTTCAAAGATTCAGTACATGAAACGCGGGTGTATGTA
ATGTGTTTTTTTGTAGACAAGTTACGACACAATTAGGTACTCCAGTACTT
GCCCATGAACACAGCCAGCATGTTCTCCTGTCCCATGACTGGGCTGCACA
CTTCTATACACTGCGTACCGTGCTGTACTGAATCGCTACTTCCATGTTGA
TGGTTGGCGTTTCCGGATCGTTTCAGACCTCGTCACGTACGTCCGAGAGC
GTGCCTATTTTTCACCTTCTAAAGGGAAAACTTGTATATATAATATGTAC
ACTTCATTGTGTTTTTCAATTCATCTTTTGTGTGCCGTGTTTATTTTGTT
TATTGAAGGTGGCCTTGCGCACTGGAAGGGAGTGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig6226:1929..4566-

>mRNA_H-paniculata_contig6226.13975.1 ID=mRNA_H-paniculata_contig6226.13975.1|Name=mRNA_H-paniculata_contig6226.13975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig6226:1929..4566- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGTAGGCGATCGGGAACCGGCGGCAGTTACGGTTACGGAAAGTGC
TGACGGCAGCGTCGTCGTTGCGACGATGGAGGTAGGCGATCGGGAACCGG
CGGCAGTTACGGTTACGGAAAGTGCTGACGGCAGCGTCGTCGTTGCGACG
GTGTCAGTCCGATGCTCTCCATCAGACATTCAGCAGGAAGAAGAGCGCGT
GTATCGCGTATTCGTCGCTCCCGGCCCATCTTTCATCGCCGACGCCCGAA
CCAACAACAATGACAACAATAACAACACCATGGAGGATGACAATAGCAAC
AAGAAGAGCAACGTGGAGCTCCCCTTCGTCGGCACGTCGTTCTCGTACAT
CGTCACCTCTAGCGGCAGCGAGCCTCCGTTCCCGAGCATCACGGCAAATG
ATGTCGGGACGGTCGACGTCGTGGGTAGCGGTGGTTCTGGGACGGGCAGG
ACGTACGTGATCGTGCTGAATGCGGTTGACACCATCCATATTTTGGAGGT
GTCAGTCCGATGCTCTCCATCAGACATTCAGCAGGAAGAAGAGCGCGTGT
ATCGCGTATTCGTCGCTCCCGGCCCATCTTTCATCGCCGACGCCCGAACC
AACAACAATGACAACAATAACAACACCATGGAGGATGACAATAGCAACAA
GAAGAGCAACGTGGAGCTCCCCTTCGTCGGCACGTCGTTCTCGTACATCG
TCACCTCTAGCGGCAGCGAGCCTCCGTTCCCGAGCATCACGGCAAATGAT
GTCGGGACGGTCGACGTCGTGGGTAGCGGTGGTTCTGGGACGGGCAGGAC
GTACGTGATCGTGCTGAATGCGGTTGACACCATCCATATTTTGGAGGTGG
CCTTGCGCACTGGAAGGGAGTGCAGCGTGGCCTTGCGCACTGGAAGGGAG
TGCAGC
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