mRNA_H-paniculata_contig62231.13972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62231.13972.1
Unique NamemRNA_H-paniculata_contig62231.13972.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A5N5G5U8_9ROSA (Uncharacterized protein n=4 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5G5U8_9ROSA)

HSP 1 Score: 103 bits (257), Expect = 5.860e-26
Identity = 51/116 (43.97%), Postives = 82/116 (70.69%), Query Frame = 1
Query:    1 SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQRLRYLL 348
            S+K+Q+VT S+ EAE+VAA     + ++LR +LG +G+  + ST ++ DN SAIKLS+    H R+KHI VR+H +R+  +EG++ L Y ++ DQ+AD++TK L +  F++LR +L
Sbjct:   10 SKKQQIVTLSTTEAEFVAAASCSCQAIWLRRMLGVLGYQQQDSTLIYCDNVSAIKLSRNPVMHGRSKHIDVRYHFLRDLCKEGVIELHYCKSEDQVADLMTKPLKQPAFEKLRSML 125          
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A1J3D358_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3D358_NOCCA)

HSP 1 Score: 105 bits (261), Expect = 4.420e-24
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQRLR 339
            SRK+ +VT SS EAEYVAA     + ++++ +LG IGF      TLF DN S IKLSK +  H ++KHI VR+H +RE  +EG++ L +  T +QLADI+TK L    FQR+R
Sbjct:  370 SRKQPIVTLSSTEAEYVAAATCACQAIWMKRVLGEIGFEQEDGMTLFCDNTSTIKLSKNAVMHGKSKHIRVRYHFLRELSKEGLVTLVHCNTEEQLADIMTKPLKMASFQRIR 482          
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 100 bits (250), Expect = 9.120e-24
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQRLR 339
            SR++Q  + S+ EAEYVAA E  KE ++LR LL  I      +  L+ DN+SAIKL K    H RTKHI VR+H I+E  + G + ++Y+++ DQLADILTK L  VKF +LR
Sbjct:  135 SRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLR 247          
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A0J7K966_LASNI (Copia protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K966_LASNI)

HSP 1 Score: 97.1 bits (240), Expect = 1.530e-23
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1
Query:   28 SSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQRLR 339
            S+ EAEY+AA +  KE ++LR LL S+G    G TT+  DN+ AIKL K    H RTKHI VR+H IRE   +G + + Y+ + DQLADILTK LS+  F RLR
Sbjct:    2 STTEAEYIAASDATKELIWLRHLLESMGVVTDGPTTMKVDNQGAIKLIKNPEYHKRTKHIEVRYHFIREKHEDGQIEIVYVPSSDQLADILTKALSKEPFIRLR 105          
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A7J0H598_9ERIC (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0H598_9ERIC)

HSP 1 Score: 103 bits (256), Expect = 3.200e-23
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQRLRYLL 348
            S+K+ +VT S+ EAE+VAA     + +++R +L  +G   RGSTT+F DN S IKLSK    H R KHI VR+H +R+  +EG + L Y  T +Q+AD++TK L    FQRLR LL
Sbjct:  570 SKKQPIVTLSTTEAEFVAAAYCASQVIWMRRILEKLGHSQRGSTTMFCDNSSTIKLSKNPVLHGRCKHIDVRFHFLRDLTKEGAVELVYCGTQEQVADVMTKPLKLEVFQRLRCLL 685          
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 97.1 bits (240), Expect = 8.490e-23
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQRLRYL 345
            S+++  V  S+ EAEY+A     +E V++REL   +     G TT+FEDN+SAI ++K    H R KHIG+++H IRE +    + +KY +T D +ADI TK L+  KF+RLR L
Sbjct:   62 SKRQDCVALSTAEAEYMALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFERLRSL 176          
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A6G0X9X4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9X4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.860e-22
Identity = 49/116 (42.24%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQRLRYLL 348
            S+K+ +V  S+ E E++AA E  K  V+L ELL  + +  + S  L  DN+SAI++++ S AH RTKHI +R+H I++ + EG++  +Y+ T +Q+ADILTK +   +F+RLR++L
Sbjct:  150 SKKQSMVGHSTTEVEFIAAAEAAKSIVWLIELLHELKYDIKQSIPLHVDNQSAIQVARRSSAHDRTKHIRLRFHFIKDLVDEGMIEQRYINTKEQVADILTKSIVLAQFERLRFML 265          
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A8H8JF23_9AGAM (Copia-like polyprotein/retrotransposon n=1 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8JF23_9AGAM)

HSP 1 Score: 100 bits (250), Expect = 2.170e-22
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQR 333
            SRK+  ++ SS EAEYVA     +E +++R+ +  +G    G TT+F DN+S+I L+K    H  TKHI V++H IRE I    L LKY+ T DQ+AD+LTK L R+KF R
Sbjct: 1303 SRKQPTISLSSTEAEYVATSSAARELIWIRQFISELGLLPEGPTTVFSDNQSSIALAKNPANHQNTKHIRVKYHFIREVIALRELDLKYIPTNDQVADVLTKPLGRLKFTR 1413          
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A4Y2TYG7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TYG7_ARAVE)

HSP 1 Score: 96.7 bits (239), Expect = 3.120e-22
Identity = 57/118 (48.31%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFG--CRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQRLRYLL 348
            S+K+  V+ S+ E EY+AA    KE  +LR+LL  +  G  C    TLF DN+SAIKL K    H RTKHI VR+H I E   +G + +KY++  +QLADI TK L +VKF++LR LL
Sbjct:  114 SQKQSTVSTSTTETEYIAASIAVKEVSWLRQLLQDVSEGELCDEGITLFVDNQSAIKLIKNPVFHKRTKHIDVRYHFIGEKCDDGSVNIKYVKYEEQLADIFTKALPKVKFEKLRELL 231          
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Match: A0A1X7SEB2_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SEB2_AMPQE)

HSP 1 Score: 95.5 bits (236), Expect = 3.140e-22
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = 1
Query:    1 SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDNKSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADILTKELSRVKFQRLR 339
            S+K+ +V  S+ EAEYVA     +E ++LR LL S+     G T + EDN+ AI ++K   AH RTKHI +R+H IRE I++ ++ + Y  + D +AD+LTK LS+ KF+ LR
Sbjct:   66 SKKQSVVALSTSEAEYVALSTCAQEAIWLRRLLNSLNAIPPGPTIINEDNQGAIAIAKNPIAHMRTKHIDIRYHFIREAIQDQVIKVCYCPSEDMIADLLTKPLSKGKFEALR 178          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62231.13972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N5G5U8_9ROSA5.860e-2643.97Uncharacterized protein n=4 Tax=Pyrus ussuriensis ... [more]
A0A1J3D358_NOCCA4.420e-2448.67Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y1N3K4_PHOPY9.120e-2449.56Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A0J7K966_LASNI1.530e-2351.92Copia protein n=1 Tax=Lasius niger TaxID=67767 Rep... [more]
A0A7J0H598_9ERIC3.200e-2347.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1X7SFX4_AMPQE8.490e-2343.48Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A6G0X9X4_9STRA1.860e-2242.24Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8H8JF23_9AGAM2.170e-2246.85Copia-like polyprotein/retrotransposon n=1 Tax=Cer... [more]
A0A4Y2TYG7_ARAVE3.120e-2248.31Retrovirus-related Pol polyprotein from transposon... [more]
A0A1X7SEB2_AMPQE3.140e-2244.25Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62231contigH-paniculata_contig62231:528..881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.5
Seed ortholog evalue1.7e-20
Seed eggNOG ortholog3641.EOY12702
KEGG koko:K13459
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944
EggNOG free text desc.Belongs to the disease resistance NB-LRR family
EggNOG OGs37T06@33090,COG2801@1,KOG0017@2759,KOG4658@1,KOG4658@2759
COG Functional cat.T
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size354
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930709.0426853-CDS-H-paniculata_contig62231:527..8811622930709.0426853-CDS-H-paniculata_contig62231:527..881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62231 528..881 -
1691481416.77834-CDS-H-paniculata_contig62231:527..8811691481416.77834-CDS-H-paniculata_contig62231:527..881Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62231 528..881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62231.13972.1prot_H-paniculata_contig62231.13972.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62231 528..881 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62231.13972.1

>prot_H-paniculata_contig62231.13972.1 ID=prot_H-paniculata_contig62231.13972.1|Name=mRNA_H-paniculata_contig62231.13972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
SRKKQLVTWSSKEAEYVAAGEVGKETVYLRELLGSIGFGCRGSTTLFEDN
KSAIKLSKGSGAHCRTKHIGVRWHGIREWIREGILALKYMQTGDQLADIL
TKELSRVKFQRLRYLLM*
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mRNA from alignment at H-paniculata_contig62231:528..881-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62231.13972.1 ID=mRNA_H-paniculata_contig62231.13972.1|Name=mRNA_H-paniculata_contig62231.13972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig62231:528..881- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAGGAAGAAACAGTTAGTCACGTGGTCCAGTAAAGAGGCAGAGTACGT TGCTGCAGGAGAAGTGGGAAAGGAGACGGTATATCTTAGGGAGTTACTGG GATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTGAGGACAAT AAATCAGCTATTAAACTCAGTAAGGGATCTGGCGCACACTGCAGGACAAA GCACATTGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGGAAGGAA TATTGGCATTGAAATACATGCAGACCGGCGATCAACTTGCTGACATTTTA ACGAAAGAACTAAGCAGAGTAAAGTTTCAGAGACTGAGATATTTACTCAT GTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig62231:528..881-

>mRNA_H-paniculata_contig62231.13972.1 ID=mRNA_H-paniculata_contig62231.13972.1|Name=mRNA_H-paniculata_contig62231.13972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig62231:528..881- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAGGAAGAAACAGTTAGTCACGTGGTCCAGTAAAGAGGCAGAGTACGT
TGCTGCAGGAGAAGTGGGAAAGGAGACGGTATATCTTAGGGAGTTACTGG
GATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTGAGGACAAT
AAATCAGCTATTAAACTCAGTAAGGGATCTGGCGCACACTGCAGGACAAA
GCACATTGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGGAAGGAA
TATTGGCATTGAAATACATGCAGACCGGCGATCAACTTGCTGACATTTTA
ACGAAAGAACTAAGCAGAGTAAAGTTTCAGAGACTGAGATATTTACTCAT
GTGATCTAGGAAGAAACAGTTAGTCACGTGGTCCAGTAAAGAGGCAGAGT
ACGTTGCTGCAGGAGAAGTGGGAAAGGAGACGGTATATCTTAGGGAGTTA
CTGGGATCGATAGGTTTCGGATGCAGGGGGAGCACGACATTGTTTGAGGA
CAATAAATCAGCTATTAAACTCAGTAAGGGATCTGGCGCACACTGCAGGA
CAAAGCACATTGGAGTGCGCTGGCACGGAATTCGAGAGTGGATTCGGGAA
GGAATATTGGCATTGAAATACATGCAGACCGGCGATCAACTTGCTGACAT
TTTAACGAAAGAACTAAGCAGAGTAAAGTTTCAGAGACTGAGATATTTAC
TCATGTGA
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