mRNA_H-paniculata_contig6222.13970.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6222.13970.1
Unique NamemRNA_H-paniculata_contig6222.13970.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6222.13970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6222contigH-paniculata_contig6222:10028..11507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size222
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6222.13970.1prot_H-paniculata_contig6222.13970.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6222 10043..11507 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930708.7868092-UTR-H-paniculata_contig6222:10027..100421622930708.7868092-UTR-H-paniculata_contig6222:10027..10042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6222 10028..10042 +
1691481416.652689-UTR-H-paniculata_contig6222:10027..100421691481416.652689-UTR-H-paniculata_contig6222:10027..10042Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6222 10028..10042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930708.8058786-CDS-H-paniculata_contig6222:10042..101941622930708.8058786-CDS-H-paniculata_contig6222:10042..10194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 10043..10194 +
1691481416.6612487-CDS-H-paniculata_contig6222:10042..101941691481416.6612487-CDS-H-paniculata_contig6222:10042..10194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 10043..10194 +
1622930708.8213668-CDS-H-paniculata_contig6222:11452..115071622930708.8213668-CDS-H-paniculata_contig6222:11452..11507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 11453..11507 +
1691481416.6688256-CDS-H-paniculata_contig6222:11452..115071691481416.6688256-CDS-H-paniculata_contig6222:11452..11507Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 11453..11507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6222.13970.1

>prot_H-paniculata_contig6222.13970.1 ID=prot_H-paniculata_contig6222.13970.1|Name=mRNA_H-paniculata_contig6222.13970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MTRPTMRRWRLTRTSATLLPLASAATLMGIGGGLLAGGVMAQDIPTLVDD
RFELSLVYSTMHLHGGLTQ
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mRNA from alignment at H-paniculata_contig6222:10028..11507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6222.13970.1 ID=mRNA_H-paniculata_contig6222.13970.1|Name=mRNA_H-paniculata_contig6222.13970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1480bp|location=Sequence derived from alignment at H-paniculata_contig6222:10028..11507+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATCGAGACAACGATGACGAGACCAACAATGAGGCGCTGGCGGCTTAC
GCGAACATCTGCTACTTTGCTCCCCTTAGCTTCGGCGGCAACACTGATGG
GCATTGGTGGAGGACTACTCGCGGGAGGTGTCATGGCGCAAGACATACCC
ACTCTTGTTGACGACAGGTGACATACTGATACAATACCGACCCGCCAACA
AGACATTTGTAGGGCTAGATACCGGCAACGTTCACCAATAAAATATATAC
TCGCTTCTGGCGCAGCCCTGACGTAGAGATTTACTGGCTTAGCGAAAGAG
CAATACCACAACTCGAGATTCGTAGATTACGGAAAAAATATGTGAAAATG
GGATGGGAGTGGTCTGCCCCCGCCGACGAGGACTCCACTTCGACGACCTC
GGGCGAGGCCATCGAGTTCGTGTTAAAACGTGCACAGGTGCCATCGCCCA
TTGTCTCATTATGCTCTCCTCTACAGTTGTATGGCGCTTAATGGAAAATT
ACTAACGCAGGGTTTCCTGACAAAAGTCAGGCATTTTACAAAGACGTACA
TGAGATATCAAAATGATGGATTATCAAAAGTTACTCCGTCAGTGTCAGTA
TATTCCTAGTATTGGTCTTAATGCAATATTTCTCGTGCCAGTACCCAGCC
CTAAAAAAACGGGCGAGACCTGCAAGCATTTTGTAATGATTATCACGAAA
AGCGTTCAATATATAGAAATTAGTATAGGGTCAGCGGTGGTGCATAATTT
CTCAGTTTATATCTCGTAGTTTCCAGACATACGAGGCTCGAACTCTTGTC
CGCTGATTTCTTATTAGGGGCCCCCGTATTGTACCAATTAAACTAAGATA
CTTAAACGAGGTTGGCAGGGACAAAATTATCCCTCAAAAGGAAGTATTCT
TATCCAAGGGGGGGGGAAAGTGAGCATTTATCGGTTGGATTCCCGTACAG
TGAACACTTCAATGAAAGGCAGTAAAAAAAGAGTGGTAGTCCCGCATACT
ATGTTCGAGCGGTCTATCTGAACAGCTAGCAGATTTCTTCCTTCCTGGGC
CTATTCGTCACGTCAATCCTTGATCTGAAGGAAAGGTTGTTCGCACTCCT
CATGGGTAATTCACGGACTCGGGTACAATGGTGGCGAATCGAATTCAAAA
CATGGAAGAAACTGAAAGAGAGAGATGAAAGAAGGCCGAGATAAGAATTG
TATAATAATAGTAATAATAATAATGATAAAATAAAAGCAGATCTATGTGG
TAGCGACTCTTTTCGTTTACATCCTTCACTTTGATTTCTCCGTGCTTTTA
GCTTGATTTATCTTGTTAACAAACACCACCGAGTCTGTCTGTACATTGTT
TGTCGGAAGGCAAATCTGATGATTCGGTTCTTTGTTTGTTACTTTGGGCG
CCACCCACGGCGTTTCTCAACACAGGTTTGAGCTGAGCCTGGTATACAGC
ACCATGCACCTCCACGGAGGTCTCACACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig6222:10028..11507+

>mRNA_H-paniculata_contig6222.13970.1 ID=mRNA_H-paniculata_contig6222.13970.1|Name=mRNA_H-paniculata_contig6222.13970.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig6222:10028..11507+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAGACCAACAATGAGGCGCTGGCGGCTTACGCGAACATCTGCTAC
TTTGCTCCCCTTAGCTTCGGCGGCAACACTGATGGGCATTGGTGGAGGAC
TACTCGCGGGAGGTGTCATGGCGCAAGACATACCCACTCTTGTTGACGAC
AGATGACGAGACCAACAATGAGGCGCTGGCGGCTTACGCGAACATCTGCT
ACTTTGCTCCCCTTAGCTTCGGCGGCAACACTGATGGGCATTGGTGGAGG
ACTACTCGCGGGAGGTGTCATGGCGCAAGACATACCCACTCTTGTTGACG
ACAGGTTTGAGCTGAGCCTGGTATACAGCACCATGCACCTCCACGGAGGT
CTCACACAGGTTTGAGCTGAGCCTGGTATACAGCACCATGCACCTCCACG
GAGGTCTCACACAG
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