mRNA_H-paniculata_contig6222.13969.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6222.13969.1
Unique NamemRNA_H-paniculata_contig6222.13969.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6222.13969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6222contigH-paniculata_contig6222:2434..7077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size378
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6222.13969.1prot_H-paniculata_contig6222.13969.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6222 2434..7000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930708.7043922-CDS-H-paniculata_contig6222:2433..25251622930708.7043922-CDS-H-paniculata_contig6222:2433..2525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 2434..2525 -
1691481416.6201174-CDS-H-paniculata_contig6222:2433..25251691481416.6201174-CDS-H-paniculata_contig6222:2433..2525Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 2434..2525 -
1622930708.7214794-CDS-H-paniculata_contig6222:4812..49741622930708.7214794-CDS-H-paniculata_contig6222:4812..4974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 4813..4974 -
1691481416.6285732-CDS-H-paniculata_contig6222:4812..49741691481416.6285732-CDS-H-paniculata_contig6222:4812..4974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 4813..4974 -
1622930708.7328172-CDS-H-paniculata_contig6222:6954..70001622930708.7328172-CDS-H-paniculata_contig6222:6954..7000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 6955..7000 -
1691481416.6366467-CDS-H-paniculata_contig6222:6954..70001691481416.6366467-CDS-H-paniculata_contig6222:6954..7000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6222 6955..7000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930708.7458963-UTR-H-paniculata_contig6222:7000..70771622930708.7458963-UTR-H-paniculata_contig6222:7000..7077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6222 7001..7077 -
1691481416.6446376-UTR-H-paniculata_contig6222:7000..70771691481416.6446376-UTR-H-paniculata_contig6222:7000..7077Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6222 7001..7077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6222.13969.1

>prot_H-paniculata_contig6222.13969.1 ID=prot_H-paniculata_contig6222.13969.1|Name=mRNA_H-paniculata_contig6222.13969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MPKIFSGIVAVLCPTGLSPGQRKIFLKGLESNGAIVLGSSDTGDGNAASP
ASLLLNSSELPLSAANKSSANSKRKRQGDNGSANQERADRSGAGREVTKR
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mRNA from alignment at H-paniculata_contig6222:2434..7077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6222.13969.1 ID=mRNA_H-paniculata_contig6222.13969.1|Name=mRNA_H-paniculata_contig6222.13969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4644bp|location=Sequence derived from alignment at H-paniculata_contig6222:2434..7077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCGACCGCGCGCCAATTGAGACAGAGTTGGGGCTGCGACGCATGAGGTG
TTACGATATCGAGACAGGGAGCTAACCATGCCGAAGATTTTCTCTGGGAT
AGTTGCTGTCTTGTGTCCCACCGGTGAGAGTGCTCGCTCCAGTTTTCTGT
GTACTGGTGGTTTCAAATTTGCTGTTTCTTTGTCTTTCCATCCTTTAATA
ATGCACATGTAAACTGTGATAATCATGACCATATTGGGCGGGCCAACGGT
GGTCTGTACTGTGAGGGCAGATGCAACATGGACCAACCAAGTGTGCATGT
ATAGCCGGAATCCGCCGAGGGTGGTGAGACCGCGATGGAAGAGTTGTTTA
TCGAACCGATTCCTATTTGCCGTGGATTTGGTCGAGTGGGTTGATTTTGC
AGTAGTGCAATGAATTTGAAAAGGTGTTGTATCTGAGGTGACGGTGTATA
CCACCCCCCCTCGCCCCCTACCCGCGTCGCCCCGGCATGACTCAGTACTC
TTTGCTCCCCAAAGGGCTCGTCTATGGGCAAATCACGAAGACATATCTCA
ACCACGCAACTTTTATATATCACTTATTGCCACAGCTTGTGAGAAAACAA
CCTTTAAGAACATATATCCGCGAAGTTTTAGAATCAGCGCTTCGTATCAC
GGAGTAGTGCAAGTAAAACAGACGTCCTGTATGGACTGGAGTGTACTAAT
TATACGCTGTCTGTAATGACTGTGTCCAAAGTGTATCATCGTCTGTGCTG
ACTGTATCCTTGTTAGTTGATCCTTCTCCCGCCGGCTCGGCTTCAAACAA
AAATAGCATCTTACAGTCCCGTCGGATCAAAACCGCGCCTTGTCACGGCT
TCATATATCAGCCACCACAAAACGTTGAAACGTAGTAACCTGGTACACCA
TCCAAGTAATTTTGTTGGTATTTAATTTATTATCCCTGCCACTATCGTAA
TCTCGATCTGACAATAAAAGGGATATACGACGAAACGATCGTATGAAGAA
ATTCCCTTTATACGAGTGGGATGGCCTCCCTTATGCATGTGAACTCGTGG
GATGTTTGATTCCATACCCTGGTGTGAGGCTTTATGTGGTATACACACAC
ACACACACACACACACACACACTTGTGAACCTTGCGTTCCTATCAAGTGC
CGTAGTCGTGATGTGCAAAACCATGTCAACCCTGATTTTGATTGCCATAT
ACATCAACTGTATTGTACTACCACTGTCGTCTAAACAGCGCCGTGTGAAG
CGGTGATCTGTTTAACTTCATACCCTGGTCTACGGGATTTTTCTCGTGTG
TACGCATCGCCACATTGTCCGTCACTCAACATGGGTGATTTGCATTTTGT
CGACTGCTGCAGTCCTAGTGCGTCGAACCATACCTGTCTGTTGTAGTCAA
CACGACTGTATATCTCTATGTCTCAGCTACCTGTACCCGTCATGACATCG
GAGGCGTTGTGTCAAAGACAAAAAATATGGCCTGTGTGTTCCTGTTTAAG
GTGAGGCGTTGTAGAGTTTATTTTCCTCTTGATTCAGGCGGGGATTAGGT
GGAGATTAGGTGGAAGTCGGCGCCCGAAGGATCATGGGATGAAATGTTGA
CTGGCGGCAGTTACCTTGCTAGTGAAAGCGTTGAAAAAACGCGCCATATG
CGAGTAAGAAAGATACATGCGGGAAATTTGCGAAATTGGGGCACCTTGCT
GATTTTCTTGTTTAATGTGAAAGAGCCCAATCCAACCATTCGAAAATACA
CGATAAAACATATGCTGAGCTCTAGAAGAGAGGCCTAGTAAAGTTTTGCA
TTGTATTGTACCGCACTGAGTTGTCGCTCTGTTATATCTTACTGTACAGC
AACGGTTCCACAGGTGAGACTGATGCGATCAGATCAGATGAGCTCATATC
GCTGATTTTGCACCGATATATCGATGGCAATATCGGTTCACCATGTTGAT
TCGTAGATGGTTTCCATCTCTGATCGATATGCTACCAATCGTGACTAGCA
TAGGTTTGTCCAGGGCTGATCCGTACGAGCTGACTCGTACTGATGTTGAT
CTGTTTGATGTGTGAACATTTGCACACTGTCGACTACGATGACTCCTCAA
CAGGACTTAGTCCAGGCCAACGCAAGATCTTTTTGAAGGGACTGGAGTCT
AACGGAGCAATTGTGTTGGGTTCTTCCGATACCGGGGATGGCAACGCTGC
GTCCCCTGCCTCCTTGCTACTGAACAGCTCCGAGCTGCCCTTGAGCGCCG
CAAATAAAAGCAGTGGTATGTATGTTACAGCTGGCTTTTTTCACTCATGT
TTTTTATTCTTCTTTTGCCAGTAGTTTGCCGAAAGTCGCACGTTCTCACC
CCCCTGAAAAACACAAGTACTTGACGTATTCGCCACGAAAAAAATTGGTA
TCGGCCTGAGTTTCAGAATGAGCGGACATACAGAAAAAAGAACCCACCCC
TGTCCATTCGATTGACCAATATTATTGGTAGTTGTGGATCGTCCCGGGCA
CATAGAATTCACGAGGTCATTCTGAAACTCAGGCGATTTTTTTTTTTTTT
CTCGTGGCGAATACGCCAAGTGTTCGTTTTTGTCCGGGCGGTACACATTT
TGTCGTTCAGTTCTAGCTATTACGGTTCACATACATGATGCGAATTTTGA
CCTTCTGTTTTTCAGCGTCTGCGAGGTCCAGCTAGTACAAAAAAAAATTT
CGATATTTTGTCGCTTGCAGGGACATCTGCTATTATAGTATTACTACTGT
AGTGGTGCATCTACAGTCACGCCCGTTCAGTCATATTCCAGTGATTTGTC
CCTCTTCCCGATTTACGGTGACGACACCCACCCTTTGTTATTGCACCCCC
GAAATATTATTTTTCTTGGCTACGACAGTGATCATGACATCGATAACGGT
ATTGTTGGAAAACATCTCGTTGAGATCTTTCGATAGACCTGCTGTTCCGG
CAGTCCGCTCTTGCTTCTCGAGAAAATCGTGTTTGAAAAATAATATCAGG
GAGTGCGATAGTCATAATCCATAACCTACGCAGAACGACTGGCTGCGCTC
GTAGCGGCTGGCTACGCTCGCATGCAGGCACAATTTCCCTCTACGATCCG
TGTTTAGAATTACTAAAGTATAGAGTTGGAACAACGTTCCGTTATCGTAG
CCTATTAAGTATTAGATCTCAGGACACTGTCGCTAAAAGTTAAATTTGAA
TACAGAAATTCTTCGTGGATGTTTTTTTTGCTTTTTTTAACCCCCGGAAG
AAAGGCTGAGGCAAAAACCTTTATCCGATGCTTCCATACTTACGTAATTT
ACCAAAGTATTTCGACATTTCCTTTAACAGAACAGAGTTATTTATTCCTC
TGCGGGGTAGGCGCCACCCCGGTTCGGCCGAACCAAGTAGGCAATGTGGG
GGTTGCACCCACTAAAAGACCTCTGACTAGACTTCCAGTCATGCTCAGAT
CACGAGCTACCCTACCCATCCGGGAGTAGGTCCGTGGTCGTGGAAGGGGT
GTAGTGAGTCTGCACTTCCAAAAACGATGATATTGGCGAGTTCTTCCCCT
TGTCCCCGATTCCAGTGTTAGACCAAATCGCAGATCTTAGCAAGACTTTG
AGTGTGTTATGGGCAGGACCGCGGAACGTTACGCGAGATTTTTTTTCTTT
TGCTGGCCTGTTGCGGATCATTATGTGGATATTTGCGCGGTTCCCCGATG
ACCATGTAAGTTTTTTTTGCCCGGTTCGGGGTCCGTCACTTGAGATATTT
CCCATCGTGTGATCACCTAACACCCTTGGACTGTAGGCATATAACTTCCA
ATGGCGATACGACATAGACCTCTCGTCTCAGCGCGACTCAACTGCCGCGG
CCTCATGCCTTGTCCCATGACGAGTGCGCTCTCCCTTTACGTGATGGAAC
AGCTTGTGGTCTGTGAGAATGTTGTGTTGCTTCTTCTACTGTTGACGCTA
AAGCCAGAAATAAAACACTGTACCTCCCTGCTCCCCCACCCCGTGAGTCA
TGCTGCGGTAGGGGGGGGGGGGGTCACTTGGTTGACGAAAGGTCGCTTCG
CACAAGCGGTGCTAATATAACGCGAACCAAAACCATGTCAATTGCTTGTG
CGTGTGCATCCCTAACGGTGCACAGTCCACGAGTTGACACGGAATTTCTG
TTTTAAGGGAGGGCAACAAATGCAAAAATTTAATAAAAAAAGTAAATGCC
CGATCTCCTTCTCAAAGCGGCTCCTTCGTTAAGCAAAGCGGCTCCTTCGT
TAGACAAAGCGGCTCAAATACCCCCCACCCTTACCCCTACCGTAGGGTGA
CTCCTGTCCATCATCGCGTCACCTATCTAATGATCTAAATATCCGCGACT
ATTTGCCCTGCCCTGTCCTGCGCTTCTCTTCGTCGCCTGTCAAATAACTC
ATCATAGTCGGGACTACTCTAGCTTTGAACCAGTTAATCGGTGTCCCATC
GAAAATGACCAATACTTGTTGATTGTTGGATGCTGTACATCGTGTCCCCG
TTCCACAAACACGCGATTTACGGTTCCAAAATCTCCACTCGGTGTTGAGC
AGCAAACAGCAAACGAAAACGACAAGGCGATAATGGTAGCGCTAATCAGG
AGCGAGCTGATCGATCAGGGGCGGGAAGAGAAGTCACAAAGCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig6222:2434..7077-

>mRNA_H-paniculata_contig6222.13969.1 ID=mRNA_H-paniculata_contig6222.13969.1|Name=mRNA_H-paniculata_contig6222.13969.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig6222:2434..7077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGAAGATTTTCTCTGGGATAGTTGCTGTCTTGTGTCCCACCGATGC
CGAAGATTTTCTCTGGGATAGTTGCTGTCTTGTGTCCCACCGGACTTAGT
CCAGGCCAACGCAAGATCTTTTTGAAGGGACTGGAGTCTAACGGAGCAAT
TGTGTTGGGTTCTTCCGATACCGGGGATGGCAACGCTGCGTCCCCTGCCT
CCTTGCTACTGAACAGCTCCGAGCTGCCCTTGAGCGCCGCAAATAAAAGC
AGTGGACTTAGTCCAGGCCAACGCAAGATCTTTTTGAAGGGACTGGAGTC
TAACGGAGCAATTGTGTTGGGTTCTTCCGATACCGGGGATGGCAACGCTG
CGTCCCCTGCCTCCTTGCTACTGAACAGCTCCGAGCTGCCCTTGAGCGCC
GCAAATAAAAGCAGTGCAAACAGCAAACGAAAACGACAAGGCGATAATGG
TAGCGCTAATCAGGAGCGAGCTGATCGATCAGGGGCGGGAAGAGAAGTCA
CAAAGCGTCAAACAGCAAACGAAAACGACAAGGCGATAATGGTAGCGCTA
ATCAGGAGCGAGCTGATCGATCAGGGGCGGGAAGAGAAGTCACAAAGCGT
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