mRNA_H-paniculata_contig6220.13967.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: D7FV82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV82_ECTSI) HSP 1 Score: 177 bits (449), Expect = 7.820e-49 Identity = 108/178 (60.67%), Postives = 123/178 (69.10%), Query Frame = 1
Query: 1 AVKPLYYFVTTEKSRKSTFTAMRMTVLAMERLLNMRHREGAWQRLTDDVHSAEGMVQTETSVGF-------------SDNFTRLVTVSAGLVGYGSRSSAMMVVRVLDELDLGKLMMLTHQLRRLMRS-PRRFDRLTMINIQEDLAELVGERGLVSVGQQLQIVQRMQRSYKFLAPPR 492
AV+P YY++ +EKSR+STFTAM VLAMERLLN+RHREG W +L D A + E VG SDN TR V VSAG R +M VRVLDELDLGKLMML HQ+ RL+RS PRRF R ++N+ EDLAELVGERGLVSVGQQLQIVQR+QRSYKFL P R
Sbjct: 596 AVRPAYYWLKSEKSRESTFTAMCTIVLAMERLLNLRHREGTWLQLAADHPVAADEKKAEGEVGLPRRRGSLLKPLGHSDNCTRQVVVSAG------RGQGLMAVRVLDELDLGKLMMLVHQVLRLIRSGPRRFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYKFLLPRR 767
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: A0A7S3L1P6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1P6_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 9.470e-13 Identity = 60/149 (40.27%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 37 KSRKSTFTAMRMTVLAMERLLNMRHREGAWQRLTDDVHSAEGMVQTETSVGFSDNFTRLVTVSAGLVGYGSRSSAMMVVRVLDELDLGKLMMLTHQLRR-LMRSPRRFDRLTMINIQEDLAELVGERGLVSVGQQLQIVQRMQRSYKFL 480
+SR+ T+ + R + +ERLL MR D + TS LV+ G V +S + V VL DLG +M+L H+LR LMR RRF R + + EDLAEL GERG VSV QQLQI+ RM R+Y FL
Sbjct: 327 RSREETYASFRSILTDIERLLVMRDSP------PDMLSRRPQQFPPPTS---------LVSSEEGHVVVAPAASGSLGVCVLSSDDLGLIMLLIHELRTILMRESRRFTRDVLRGVSEDLAELAGERGAVSVRQQLQILTRMNRNYSFL 460
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: A0A7R9VRK5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRK5_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 5.920e-12 Identity = 59/149 (39.60%), Postives = 77/149 (51.68%), Query Frame = 1
Query: 37 KSRKSTFTAMRMTVLAMERLLNMRHREGAWQRLTDDVHSAEGMVQTETSVGFSDNFTRLVTVSAGLVGYGSRSSAMMVVRVLDELDLGKLMMLTHQLRRLMR-SPRRFDRLTMINIQEDLAELVGERGLVSVGQQLQIVQRMQRSYKFL 480
KSR+ T+ + R VL +ERLL MR DD SA + + + G +G S+ L+ DLG LM+L H+ R ++ + RRF R + N+ EDLAEL GERG VSV QQLQIV RM R+Y FL
Sbjct: 16 KSREETYASFRYNVLDIERLLLMR----------DDPPSAPPPIAWGSGRKGGEQQPETKN-EGGRLGEPRCST-------LNAEDLGMLMLLIHECRTILSDNRRRFRRNELRNVSEDLAELAGERGAVSVQQQLQIVARMSRTYPFL 146
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: A0A7S1Z033_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z033_TRICV) HSP 1 Score: 70.5 bits (171), Expect = 2.880e-11 Identity = 62/150 (41.33%), Postives = 79/150 (52.67%), Query Frame = 1
Query: 37 KSRKSTFTAMRMTVLAMERLLNMRHRE-GAWQRLTDDVHSAEGMVQTETSVGFSDNFTRLVTVSAGLVGYGSRSSAMMVVRVLDELDLGKLMMLTHQLRRLM-RSPRRFDRLTMINIQEDLAELVGERGLVSVGQQLQIVQRMQRSYKFL 480
KS++ TF R VL +ERLL MR A L +A SV S + +AG G RS+ +L+ DLG LM+L + R ++ + RRF + N+ EDLAELVGERG VSV QQLQIV RM R+Y FL
Sbjct: 191 KSKEETFAHFRTIVLDIERLLVMRDNPPSAPPPLMWGAANANKNSMAPISVDPSSS------TAAGPYGDLGRST------ILNAEDLGMLMLLVRECRTILWENRRRFSPAVVRNVSEDLAELVGERGSVSVQQQLQIVGRMCRTYSFL 328
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: A0A7S2UIW5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UIW5_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.150e-10 Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 1
Query: 7 KPLYY-FVTTEKSRKSTFTAMRMTVLAMERLLNMRHREG-AWQRLTDDVHSAEGMVQTETSVGFSDNF-TRLVTVSAGLVGYGSRSSAMMVVRVLDELDLGKLMMLTHQLRRLM-RSPRRFDRLTMINIQEDLAELVGERGLVSVGQQLQIVQRMQRSYKFL 480
K LYY + KSR+ T+ + R+ +L MERLL MR A LT S + ++ S +F +V S+ G V VL DLG LM+ H+ R ++ R+ +RF R + ++ EDL+EL GERG VSV QQLQI+ RM R+Y FL
Sbjct: 106 KFLYYALLKLGKSREETYASFRLVLLDMERLLLMRSNPPLAPPPLTWGESSKKNLLS-------SPHFGPMIVDDSSTRANNGD-------VTVLKSDDLGMLMLHIHECRTILWRNRKRFTRQIIRDVSEDLSELAGERGPVSVQQQLQIMARMARTYPFL 253
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: A0A6H5L218_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L218_9PHAE) HSP 1 Score: 62.8 bits (151), Expect = 2.360e-10 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query: 1 AVKPLYYFVTTEKSRKSTFTAMRMTVLAMERLLNMRHREGAW 126
AV+P YY++ +EKSR+STFTAM LAMERLLN+RHREG W
Sbjct: 17 AVRPAYYWLKSEKSRESTFTAMCTIALAMERLLNLRHREGTW 58
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: A0A6U3SXL5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SXL5_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 3.550e-10 Identity = 57/160 (35.62%), Postives = 79/160 (49.38%), Query Frame = 1
Query: 7 KPLYYFVTTEKSRKSTFTAMRMTVLAMERLLNMRHREG-AWQRLTDDVHSAEGMVQTETSVGFSDNFTRLVTVSAGLVGYGSRSSAMMVVRVLDELDLGKLMMLTHQLRRLMRSP-RRFDRLTMINIQEDLAELVGERGLVSVGQQLQIVQRMQRSYKFL 480
K Y + KSR+ TF + R +L +ERLL MR A L+ ++A Q G +L+ DLG +M+L HQ R++++ RRF + T+ N+ EDLAEL GERG V+V QQLQI+ RM R+Y FL
Sbjct: 454 KIFYALLKIGKSREETFGSFRHVMLDIERLLVMRDNPPLAPPLLSTRANTAMQRGQXXXXXXXXXXXXXXXXXXXXXXXXGEC--------MLNSDDLGMVMLLVHQCRKILQEDGRRFSQSTIRNVSEDLAELAGERGAVTVRQQLQILSRMGRTYPFL 605
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: A0A7S4UYT7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UYT7_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 3.710e-10 Identity = 57/160 (35.62%), Postives = 79/160 (49.38%), Query Frame = 1
Query: 7 KPLYYFVTTEKSRKSTFTAMRMTVLAMERLLNMRHREG-AWQRLTDDVHSAEGMVQTETSVGFSDNFTRLVTVSAGLVGYGSRSSAMMVVRVLDELDLGKLMMLTHQLRRLMRSP-RRFDRLTMINIQEDLAELVGERGLVSVGQQLQIVQRMQRSYKFL 480
K Y + KSR+ TF + R +L +ERLL MR A L+ ++A Q G +L+ DLG +M+L HQ R++++ RRF + T+ N+ EDLAEL GERG V+V QQLQI+ RM R+Y FL
Sbjct: 653 KIFYALLKIGKSREETFGSFRHVMLDIERLLVMRDNPPLAPPLLSTRANTAMQRGQXXXXXXXXXXXXXXXXXXXXXXXXGEC--------MLNSDDLGMVMLLVHQCRKILQEDGRRFSQSTIRNVSEDLAELAGERGAVTVRQQLQILSRMGRTYPFL 804
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: A0A7S3QA01_9STRA (Hypothetical protein n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QA01_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 5.150e-10 Identity = 57/159 (35.85%), Postives = 83/159 (52.20%), Query Frame = 1
Query: 7 KPLYYFVTTEKSRKSTFTAMRMTVLAMERLLNMRHREGAWQRLTDDVHSAEGMVQTETSVGFSDNFTRLVTVSAGLVGYGSRSSAMMVVRVLDELDLGKLMMLTHQLRRLM-RSPRRFDRLTMINIQEDLAELVGERGLVSVGQQLQIVQRMQRSYKFL 480
K +Y + KS++ TF + R +L +ERLL MR +A ++ + G + N V + + +S+ ++L DLG LM+L H+ R ++ + RRF R + N EDLAEL GERG VSV QQLQI+ RM R+Y FL
Sbjct: 792 KVVYAILKIGKSKEETFASFRHILLDIERLLVMRD-------------NAPPPPRSLFTAGNNTN----VRMGSNRHNAAQQSND----QILSSDDLGMLMLLVHECRVILWQDRRRFTRSELRNASEDLAELAGERGAVSVRQQLQIIARMCRTYSFL 929
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Match: A0A7S4MTH1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MTH1_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 2.090e-9 Identity = 57/149 (38.26%), Postives = 75/149 (50.34%), Query Frame = 1
Query: 37 KSRKSTFTAMRMTVLAMERLLNMRHREGAWQRLTDDVHSAEGMVQTETSVGFSDNFTRLVTVSAGLVGYGSRSSAMMVVRVLDELDLGKLMMLTHQLRRLMR-SPRRFDRLTMINIQEDLAELVGERGLVSVGQQLQIVQRMQRSYKFL 480
KSR+ + R +L +ERLL MR D+ SA + S +++ R L G VL DLG LM+L H+ R ++ + RRF R + ++ EDLAEL GERG VSV QQLQIV RM R+Y FL
Sbjct: 318 KSREEMYAEFRHNILDIERLLLMR----------DNPPSAPPPLTWGGSTEGANSQMRAEPSREKLGG----------CNVLSAEDLGMLMLLIHECRTILNENRRRFARSGLRSVSEDLAELAGERGAVSVQQQLQIVARMCRTYPFL 446 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6220.13967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6220.13967.1 >prot_H-paniculata_contig6220.13967.1 ID=prot_H-paniculata_contig6220.13967.1|Name=mRNA_H-paniculata_contig6220.13967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp AVKPLYYFVTTEKSRKSTFTAMRMTVLAMERLLNMRHREGAWQRLTDDVHback to top mRNA from alignment at H-paniculata_contig6220:349..2264+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6220.13967.1 ID=mRNA_H-paniculata_contig6220.13967.1|Name=mRNA_H-paniculata_contig6220.13967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1916bp|location=Sequence derived from alignment at H-paniculata_contig6220:349..2264+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6220:349..2264+ >mRNA_H-paniculata_contig6220.13967.1 ID=mRNA_H-paniculata_contig6220.13967.1|Name=mRNA_H-paniculata_contig6220.13967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig6220:349..2264+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |