mRNA_H-paniculata_contig62196.13964.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62196.13964.1
Unique NamemRNA_H-paniculata_contig62196.13964.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 219 bits (559), Expect = 2.200e-61
Identity = 115/255 (45.10%), Postives = 157/255 (61.57%), Query Frame = 1
Query:   85 VCSACEKETAWKQPIKPYREERTTKPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARAKGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDEDSPSCRIYNPENKSVQLSRNVRFEEEDF 846
            +C AC K    +Q  K  R  R  + LE+VHTDIAGP D  S GG R+ + F+DD+SR   +Y L++KSEA   LK+F+    +  G  +K LRSD+GG YT K F  FC E+ I  + +A YTPQQ+GVAER  R+I  MAR+ +    + R +WAEA+R AVY LNR PT+     T  E W G+ P + H ++FGC AY       R+KLDD+    + +GYDE S + R+YNP  K + +SR+V F+E D+
Sbjct:  364 LCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 618          
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 216 bits (549), Expect = 2.600e-60
Identity = 116/287 (40.42%), Postives = 172/287 (59.93%), Query Frame = 1
Query:    1 LLHERLGHVRH--LPTVARQQGGR----LSGKLGVCSACEKETAWKQPIKPYREERTTKPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARAKGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDEDSPSCRIYNPENKSVQLSRNVRFEEE 840
            L H R GH+    L  ++++   R    +S    +C  C     +++        R  KPLEL+HTDI GP+   S G   + ++F+DD+SR   VY L+QKSEA    K+F+  V +  GL IK +RSD+GG +T + F+NFC ++ I++  +   +PQQ+GVAER  R+I  MAR+ + + N+ + +WAEA+  AVY LNR+PTR   G T  E W G  P + HLRVFG  AY     + R KLDDK+ A + +GYD +S   ++YNP+  ++ +SR+V F+EE
Sbjct:  115 LWHLRFGHLNFGGLELLSKKDMVRGLPFISHPNQLCEGCLLGKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKAYAHVPDETRSKLDDKSKAFIFIGYDSNSKGYKLYNPDTNNLVISRDVEFDEE 401          
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 216 bits (550), Expect = 3.730e-60
Identity = 113/287 (39.37%), Postives = 166/287 (57.84%), Query Frame = 1
Query:    1 LLHERLGHVRHLPTVARQQGGRLSGKL-------GVCSACEKETAWKQPIKPYREERTTKPLELVHTDIAGPVDK-SFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARAKGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDEDSPSCRIYNPENKSVQLSRNVRFEE 837
            L H+RLGH  +  T+ R     L   L        +C  C+     K P       R T+ L+LVHTD+ GP+   S  G ++ ++F+DDY+RM  V+ L++KS+      +F+  V    GL++KRLRSD G  YT   F+ FC +  I+ + +  YTPQQ+GV+ER  R++ +MAR  +    + + +WAEA+ ++VY LN  PT+   G T +E WHG TP ++HL+VFGC  Y +    +R KLD K+  G+ LGY   S   RIYNP  K + +SRNV+F+E
Sbjct:  395 LWHKRLGHFSY-STLKRMSSNDLVKNLPAIQDNANLCDVCQYGKQRKLPFPKEASWRATEKLQLVHTDVCGPMSTTSLNGSKYFLLFIDDYTRMSWVFFLKKKSDVFANFLKFKFMVENETGLQVKRLRSDNGTEYTAGEFKKFCEQVGIQHQLTVPYTPQQNGVSERKNRTVMEMARCLLFEKGLPKTFWAEAVNTSVYLLNLLPTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA)

HSP 1 Score: 216 bits (549), Expect = 5.400e-60
Identity = 112/255 (43.92%), Postives = 157/255 (61.57%), Query Frame = 1
Query:   85 VCSACEKETAWKQPIKPYREERTTKPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARAKGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDEDSPSCRIYNPENKSVQLSRNVRFEEEDF 846
            +C AC K    +Q  +  +  R  KPLE+VH+D+AGP D  S GG R+ + F+DD+SR   VY L++KSE     K+F+  V +  G  +K LRSD+GG YT   F +F  E+ I  + +  YTPQQ+GVAER  R+I  +AR+ +   ++ R +WAEA+R AVY LNR PT+     T  E W G+ P + HL++FGC AY     Q R+KLDD+    + +GYDE S + R YNP  K V +SR+V F+E D+
Sbjct:  817 LCEACIKGKQHRQSFEVGKSRRARKPLEIVHSDLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKNRTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAYSHVPEQLRKKLDDRGEKCIFIGYDERSKAYRFYNPLTKKVIISRDVEFDEADY 1071          
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 214 bits (546), Expect = 1.420e-59
Identity = 111/244 (45.49%), Postives = 154/244 (63.11%), Query Frame = 1
Query:  118 KQPIKPYREERTTKPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARAKGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDEDSPSCRIYNPENKSVQLSRNVRFEEEDF 846
            +Q  +  R  R  +PLE+VHTDIAGP D  S GG R+ + F+DD+SR   +Y L++KSEA   L++F+    +  G  +K LRSD+GG YT K F  FC E+ I  + +  YTPQQ+GVAER  R+I  MAR+ +    + R +WAEA+R AVY LNR PT+     T  E W G+ P + HL++FGC AY     Q R+KLDD+    + +GYDE S + R+YNP  K + +SR+V F+E D+
Sbjct: 1296 RQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 1539          
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: A0A6D2IM54_9BRAS (Uncharacterized protein n=2 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2IM54_9BRAS)

HSP 1 Score: 214 bits (545), Expect = 1.820e-59
Identity = 119/288 (41.32%), Postives = 174/288 (60.42%), Query Frame = 1
Query:    1 LLHERLGHVRHL---PTVARQQGGRL-----SGKLGVCSACEKETAWKQPIKPYREERTTKPLELVHTDIAGPV-DKSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARAKGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDEDSPSCRIYNPENKSVQLSRNVRFEE 837
            L H+RLGH+ H      V ++    L     +G  G+C  C +    ++ I      R ++ L+LVHTDI GP+   S  G R+ I F+DDYSR    + L +KSEA  A K+F+    R  GL +  LRSD+GG Y    F+++C EN IK++ +AAYTPQQ+G+AER  RSI  MAR  M   ++ RR+W EA++ AV+ LNR+P+      T  E+W    P ++H+RVFGC AY +   ++R KLD+K+   V +G  ++S + R+YNPE K + +SR+VRF+E
Sbjct:  437 LWHKRLGHLSHSGMQSLVEKKMVNGLPQLSHNGDGGLCDICMRGKQNRENIPKKSSWRASRALQLVHTDICGPIAPTSASGKRYIINFIDDYSRKCWSFLLAEKSEALRAFKEFKVAAEREMGLSLVSLRSDRGGEYNSAAFQDYCRENGIKRQLTAAYTPQQNGIAERKNRSIMNMARCMMLGMSVPRRFWPEAVQYAVHVLNRSPSAALGDVTPDERWSNHKPSVEHVRVFGCVAYALVPYERRVKLDEKSIQCVFVGVSKESKAYRLYNPETKKIIISRDVRFDE 724          
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 201 bits (510), Expect = 3.000e-59
Identity = 121/299 (40.47%), Postives = 170/299 (56.86%), Query Frame = 1
Query:    1 LLHERLGHVRHLPTVARQQGGRLSG--------KLGVCSACEKETAWKQPIKPYREERTTKPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARA----KGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGG-TSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDE--DSPSC-RIYNPENKSVQLSRNVRFEEEDF 846
            L H+R GH+ +      +Q G + G        K GVC  CE+    K+       ER  +PLELVHTD+ GPV+ +S GG R+AI F DDY+R R VY ++ KSE+   LK++ +D+  +    K   ++ LRSD GG YTG  F+NFC  + I+Q+F   Y PQ +G+AE+SW  +  MARA    A +G+ +WAEA+ +A Y  NR+       G T Y K  G+   + HLR FGC A+    S +R K DD+A  G+ +GYD+  ++P C RIY P       S +V F+EE F
Sbjct:   23 LWHQRFGHMNY---EYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSWHILCNMARALRIQAGLGKGFWAEALNTAAYIWNRSRNSALGPGETPYYKMFGKHASVKHLRTFGCKAFVHDTSVRRGKFDDRAVEGILIGYDDIGNNPKCYRIYIPSLGRYIRSGHVTFDEETF 318          
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 207 bits (526), Expect = 6.300e-59
Identity = 123/299 (41.14%), Postives = 172/299 (57.53%), Query Frame = 1
Query:    1 LLHERLGHVRHLPTVARQQGGRLSG--------KLGVCSACEKETAWKQPIKPYREERTTKPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARA----KGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGG-TSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDE--DSPSC-RIYNPENKSVQLSRNVRFEEEDF 846
            L H+R GH+ +      +Q G + G        K GVC  CE+    K+       ER  +PLELVHTD+ GPV+ +S GG R+AI F DDY+R R VY ++ KSE+   LK++ +D+  +    K   ++ LRSD GG YTG  F+NFC  + I+Q+F   Y PQ +GVAE+SW  +  MAR+    A +G+R+WAEA+ +A Y LNR+ T     G T Y K  G+   + H R FGC A+    S +R K DD+A  G+ +GYD+  ++P C RIY P       S +V F+EE F
Sbjct:   23 LWHQRFGHMNY---EYLRQMGEIDGTGVPKGIKKPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLRGLRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSWHVLSNMARSLRIQAGLGKRFWAEALNTAAYILNRSRTSALGPGETPYYKMFGKHTSVKHFRTFGCKAFVHDTSVRRGKFDDRAVEGIMIGYDDIGNNPKCYRIYIPSIGKYIKSGHVTFDEETF 318          
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: UPI000A29CC5E (uncharacterized protein LOC110224828 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29CC5E)

HSP 1 Score: 211 bits (536), Expect = 1.350e-58
Identity = 113/288 (39.24%), Postives = 171/288 (59.38%), Query Frame = 1
Query:    1 LLHERLGHVRH--LPTVARQQGGR----LSGKLGVCSACEKETAWKQPIKPYREERTTKPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARAKGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDEDSPSCRIYNPENKSVQLSRNVRFEEED 843
            L H R GH+    L  +++++  R    ++    VC  C     +K         R  KPLEL+HTD+ GP+  KS G   + ++F+DD+SR   VY L++KSE     K+F+  V +  GL IK +RSD+GG +T K F  +C +N I+++ +   +PQQ+GVAER  R+I +MAR+ + +  + +  WAEA+  AVY LNR+PT+  +G T  E W G  P + HLRVFG  A+     ++R KLDDK+   + +GYD +S   ++YNP+ K   +SRNV F+EE+
Sbjct:  466 LWHLRFGHLNFGGLKLLSKKEMVRGLPCINHPNQVCEGCLLGKQFKMSFPKESSTRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFENFKRFKAHVEKESGLTIKSMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVAYAVYLLNRSPTKSISGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNVVFDEEE 753          
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Match: Q9M197_ARATH (Copia-type reverse transcriptase-like protein n=6 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9M197_ARATH)

HSP 1 Score: 211 bits (538), Expect = 1.540e-58
Identity = 113/287 (39.37%), Postives = 169/287 (58.89%), Query Frame = 1
Query:    1 LLHERLGHVRH--LPTVARQQGGR----LSGKLGVCSACEKETAWKQPIKPYREERTTKPLELVHTDIAGPVD-KSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPWALKQFERDVARAKGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAYTPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTRPHNGGTSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSLGYDEDSPSCRIYNPENKSVQLSRNVRFEEE 840
            L H R GH+    L  ++R++  R    ++    VC  C     +K         R  KPLEL+HTD+ GP+  KS G   + ++F+DD+SR   VY L++KSE     K+F+  V +  GL IK +RSD GG +T K F  +C +N I+++ +   +PQQ+GVAER  R+I +MAR+ + +  + +  WAEA+  AVY LNR+PT+  +G T  E W G  P + HLRVFG  A+     ++R KLDDK+   + +GYD +S   ++YNP+ K   +SRN+ F+EE
Sbjct:  467 LWHLRFGHLNFGGLELLSRKEMVRGLPCINHPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEE 753          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62196.13964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A2WSU7_HIBSY2.200e-6145.10Integrase catalytic domain-containing protein n=2 ... [more]
UPI001F0044642.600e-6040.42DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A151T355_CAJCA3.730e-6039.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G2VUS6_CAPBA5.400e-6043.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2WXP0_HIBSY1.420e-5945.49Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A6D2IM54_9BRAS1.820e-5941.32Uncharacterized protein n=2 Tax=Microthlaspi errat... [more]
W7TGQ6_9STRA3.000e-5940.47Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
W7TIQ5_9STRA6.300e-5941.14Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
UPI000A29CC5E1.350e-5839.24uncharacterized protein LOC110224828 n=1 Tax=Arabi... [more]
Q9M197_ARATH1.540e-5839.37Copia-type reverse transcriptase-like protein n=6 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62196contigH-paniculata_contig62196:2..847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score203.0
Seed ortholog evalue1.9e-49
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size846
Cds size846
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.9771278-CDS-H-paniculata_contig62196:1..8471622930707.9771278-CDS-H-paniculata_contig62196:1..847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62196 2..847 +
1691481416.2316096-CDS-H-paniculata_contig62196:1..8471691481416.2316096-CDS-H-paniculata_contig62196:1..847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62196 2..847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62196.13964.1prot_H-paniculata_contig62196.13964.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62196 2..847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62196.13964.1

>prot_H-paniculata_contig62196.13964.1 ID=prot_H-paniculata_contig62196.13964.1|Name=mRNA_H-paniculata_contig62196.13964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
LLHERLGHVRHLPTVARQQGGRLSGKLGVCSACEKETAWKQPIKPYREER
TTKPLELVHTDIAGPVDKSFGGCRFAIIFVDDYSRMRKVYTLRQKSEAPW
ALKQFERDVARAKGLRIKRLRSDQGGGYTGKPFRNFCAENSIKQEFSAAY
TPQQSGVAERSWRSIFKMARASMTAANMGRRYWAEAMRSAVYCLNRAPTR
PHNGGTSYEKWHGETPKLDHLRVFGCTAYKMFQSQQRRKLDDKAWAGVSL
GYDEDSPSCRIYNPENKSVQLSRNVRFEEEDF
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mRNA from alignment at H-paniculata_contig62196:2..847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62196.13964.1 ID=mRNA_H-paniculata_contig62196.13964.1|Name=mRNA_H-paniculata_contig62196.13964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=846bp|location=Sequence derived from alignment at H-paniculata_contig62196:2..847+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACTACACGAGCGACTTGGGCATGTTCGACACCTTCCCACAGTCGCGCG GCAACAAGGCGGAAGGTTAAGCGGGAAGCTCGGTGTCTGCTCGGCGTGTG AGAAGGAGACAGCGTGGAAGCAGCCCATAAAACCGTATCGAGAAGAGCGA ACGACCAAGCCATTGGAGCTGGTGCACACTGACATAGCCGGACCGGTGGA CAAGTCTTTCGGAGGATGTCGCTTCGCCATTATCTTCGTCGACGACTACA GCAGAATGCGCAAAGTCTATACCTTGCGACAAAAGTCGGAGGCGCCATGG GCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAAGGGTTTGCGGAT TAAGCGCCTTCGGTCGGATCAGGGAGGAGGATATACTGGGAAGCCTTTTA GAAACTTCTGCGCCGAAAATAGTATCAAGCAGGAGTTCTCTGCCGCCTAC ACACCGCAACAAAGCGGTGTGGCGGAGCGCAGCTGGCGCAGCATTTTCAA GATGGCAAGAGCCAGCATGACCGCCGCCAACATGGGTCGTCGATATTGGG CGGAAGCGATGCGCTCGGCGGTATACTGCCTAAATCGTGCCCCGACGCGA CCACACAACGGAGGAACGTCGTACGAAAAATGGCACGGCGAGACACCAAA GTTGGACCACCTTCGCGTCTTCGGCTGCACGGCGTATAAAATGTTCCAGT CGCAACAGAGACGCAAACTCGACGACAAAGCATGGGCGGGGGTGAGTTTG GGGTACGATGAGGACAGCCCGAGTTGTCGCATATATAACCCGGAAAACAA GAGCGTCCAGTTGAGCAGGAACGTGAGATTTGAGGAAGAGGACTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig62196:2..847+

>mRNA_H-paniculata_contig62196.13964.1 ID=mRNA_H-paniculata_contig62196.13964.1|Name=mRNA_H-paniculata_contig62196.13964.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig62196:2..847+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACTACACGAGCGACTTGGGCATGTTCGACACCTTCCCACAGTCGCGCG
GCAACAAGGCGGAAGGTTAAGCGGGAAGCTCGGTGTCTGCTCGGCGTGTG
AGAAGGAGACAGCGTGGAAGCAGCCCATAAAACCGTATCGAGAAGAGCGA
ACGACCAAGCCATTGGAGCTGGTGCACACTGACATAGCCGGACCGGTGGA
CAAGTCTTTCGGAGGATGTCGCTTCGCCATTATCTTCGTCGACGACTACA
GCAGAATGCGCAAAGTCTATACCTTGCGACAAAAGTCGGAGGCGCCATGG
GCCCTGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAAGGGTTTGCGGAT
TAAGCGCCTTCGGTCGGATCAGGGAGGAGGATATACTGGGAAGCCTTTTA
GAAACTTCTGCGCCGAAAATAGTATCAAGCAGGAGTTCTCTGCCGCCTAC
ACACCGCAACAAAGCGGTGTGGCGGAGCGCAGCTGGCGCAGCATTTTCAA
GATGGCAAGAGCCAGCATGACCGCCGCCAACATGGGTCGTCGATATTGGG
CGGAAGCGATGCGCTCGGCGGTATACTGCCTAAATCGTGCCCCGACGCGA
CCACACAACGGAGGAACGTCGTACGAAAAATGGCACGGCGAGACACCAAA
GTTGGACCACCTTCGCGTCTTCGGCTGCACGGCGTATAAAATGTTCCAGT
CGCAACAGAGACGCAAACTCGACGACAAAGCATGGGCGGGGGTGAGTTTG
GGGTACGATGAGGACAGCCCGAGTTGTCGCATATATAACCCGGAAAACAA
GAGCGTCCAGTTGAGCAGGAACGTGAGATTTGAGGAAGAGGACTTCTTAC
TACACGAGCGACTTGGGCATGTTCGACACCTTCCCACAGTCGCGCGGCAA
CAAGGCGGAAGGTTAAGCGGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAA
GGAGACAGCGTGGAAGCAGCCCATAAAACCGTATCGAGAAGAGCGAACGA
CCAAGCCATTGGAGCTGGTGCACACTGACATAGCCGGACCGGTGGACAAG
TCTTTCGGAGGATGTCGCTTCGCCATTATCTTCGTCGACGACTACAGCAG
AATGCGCAAAGTCTATACCTTGCGACAAAAGTCGGAGGCGCCATGGGCCC
TGAAGCAATTCGAGAGGGACGTAGCGAGGGCAAAGGGTTTGCGGATTAAG
CGCCTTCGGTCGGATCAGGGAGGAGGATATACTGGGAAGCCTTTTAGAAA
CTTCTGCGCCGAAAATAGTATCAAGCAGGAGTTCTCTGCCGCCTACACAC
CGCAACAAAGCGGTGTGGCGGAGCGCAGCTGGCGCAGCATTTTCAAGATG
GCAAGAGCCAGCATGACCGCCGCCAACATGGGTCGTCGATATTGGGCGGA
AGCGATGCGCTCGGCGGTATACTGCCTAAATCGTGCCCCGACGCGACCAC
ACAACGGAGGAACGTCGTACGAAAAATGGCACGGCGAGACACCAAAGTTG
GACCACCTTCGCGTCTTCGGCTGCACGGCGTATAAAATGTTCCAGTCGCA
ACAGAGACGCAAACTCGACGACAAAGCATGGGCGGGGGTGAGTTTGGGGT
ACGATGAGGACAGCCCGAGTTGTCGCATATATAACCCGGAAAACAAGAGC
GTCCAGTTGAGCAGGAACGTGAGATTTGAGGAAGAGGACTTC
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