mRNA_H-paniculata_contig6219.13963.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6219.13963.1
Unique NamemRNA_H-paniculata_contig6219.13963.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6219.13963.1 vs. uniprot
Match: D7G3U1_ECTSI (Sphingosine-1-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U1_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 2.120e-32
Identity = 65/90 (72.22%), Postives = 70/90 (77.78%), Query Frame = 2 
Query:   71 SLRELMYSMVLSKRLLGYVRSLQAACGISADGLPSYPALHAIFSLASTLGDEAFYTVALPLCAWLLDLALSRRLALFWASTYYVGQAAKD 340
            SLR  +   V SKRLLGYVRS QAACG+SA G      LHA+F+ AS LGDEAFYTVALPLCAW+LDL L RRLA FWASTYY GQAAKD
Sbjct:   15 SLRRNLCDAVTSKRLLGYVRSFQAACGVSAAGRVGNAPLHALFTAASALGDEAFYTVALPLCAWVLDLELGRRLAFFWASTYYAGQAAKD 104
[Close]
BLAST of mRNA_H-paniculata_contig6219.13963.1 vs. uniprot
Match: A0A2C9JVA6_BIOGL (acidPPc domain-containing protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JVA6_BIOGL)

HSP 1 Score: 68.9 bits (167), Expect = 1.790e-10
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 2 
Query:  185 LHAIFSLASTLGDEAFYTVALPLCAWLLDLALSRRLALFWASTYYVGQAAKDIFMLPRPPFP-VVPLERRYSAE 403
            +H +F   ++LG+E FY +      W LD  + RR  + W    YVGQAAKDI M PRP  P V+PLE+RY  E
Sbjct:  158 IHWLFLFGASLGNELFYILFFSFSLWNLDSVVIRRTIIVWGVIMYVGQAAKDIIMWPRPKSPPVIPLEKRYELE 231
[Close]
BLAST of mRNA_H-paniculata_contig6219.13963.1 vs. uniprot
Match: A0A210PIP2_MIZYE (Sphingosine-1-phosphate phosphatase 1 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PIP2_MIZYE)

HSP 1 Score: 65.9 bits (159), Expect = 2.000e-9
Identity = 37/77 (48.05%), Postives = 44/77 (57.14%), Query Frame = 2 
Query:  176 YPALHAIFSLASTLGDEAFYTVALPLCAWLLDLALSRRLALFWASTYYVGQAAKDIFMLPRPPFP-VVPLERRYSAE 403
            Y  L   F++AS+LG+EAFY +  P C W  D  L R+ AL W    +VGQ  KD  MLPRP  P VV LE  Y  E
Sbjct:  104 YRLLLHFFTIASSLGNEAFYLLFYPCCYWNCDSLLIRQTALVWCLCMWVGQGTKDSLMLPRPSAPPVVRLETYYLQE 180
[Close]
BLAST of mRNA_H-paniculata_contig6219.13963.1 vs. uniprot
Match: UPI0018A77FC8 (sphingosine-1-phosphate phosphatase 2-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI0018A77FC8)

HSP 1 Score: 63.5 bits (153), Expect = 1.310e-8
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 2 
Query:  194 IFSLASTLGDEAFYTVALPLCAWLLDLALSRRLALFWASTYYVGQAAKDIFMLPRPPFP-VVPLERRYSAE 403
            +FSLA+ LG E FY++     AW +D A+ RR+ + W  T Y+GQA KDI  +PRP  P VV L+ +++ E
Sbjct:  168 LFSLATALGGELFYSIFFCFWAWNVDGAVLRRVIVIWMITMYIGQALKDILKVPRPACPPVVRLDPKWALE 238
[Close]
BLAST of mRNA_H-paniculata_contig6219.13963.1 vs. uniprot
Match: UPI001C716120 (sphingosine-1-phosphate phosphatase 2-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C716120)

HSP 1 Score: 62.4 bits (150), Expect = 3.280e-8
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 2 
Query:  194 IFSLASTLGDEAFYTVALPLCAWLLDLALSRRLALFWASTYYVGQAAKDIFMLPRPPFP-VVPLERRYSAE 403
            +FSLA+ +G E FY++     AW +D A+ RR+ + W  T Y+GQA KDI  +PRP  P VV L+ +++ E
Sbjct:  161 MFSLATAIGGEIFYSIFFCFWAWNVDGAVLRRVIVIWMITMYIGQALKDILKVPRPACPPVVRLDPKWALE 231
[Close]
BLAST of mRNA_H-paniculata_contig6219.13963.1 vs. uniprot
Match: UPI0014256A3C (sphingosine-1-phosphate phosphatase 2-like n=2 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014256A3C)

HSP 1 Score: 58.9 bits (141), Expect = 4.870e-7
Identity = 28/71 (39.44%), Postives = 39/71 (54.93%), Query Frame = 2 
Query:  194 IFSLASTLGDEAFYTVALPLCAWLLDLALSRRLALFWASTYYVGQAAKDIFMLPRPPFP-VVPLERRYSAE 403
            +F   + LG++ FY V  P   W     L RR    W  T Y+GQ+AK++  +PRPP P  + +ERRY  E
Sbjct:   99 LFCFGAELGNKYFYLVFYPFFMWNFSPWLLRRAIYVWVVTMYIGQSAKELIKMPRPPCPPAIKMERRYEME 169
[Close]
BLAST of mRNA_H-paniculata_contig6219.13963.1 vs. uniprot
Match: A0A7M5WQR1_9CNID (acidPPc domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WQR1_9CNID)

HSP 1 Score: 57.4 bits (137), Expect = 1.720e-6
Identity = 31/68 (45.59%), Postives = 37/68 (54.41%), Query Frame = 2 
Query:  194 IFSLASTLGDEAFYTVALPLCAWLLDLALSRRLALFWASTYYVGQAAKDIFMLPRPPFPVV-PLERRY 394
            I   AS LG E FY V L    W++DL L R  ++     +YV  A K+ F LPRPP P V PLE  Y
Sbjct:  107 IMKFASILGTEEFYAVLLCFLTWIVDLRLGRLASIAMGIGFYVANAVKNAFCLPRPPSPPVRPLEDAY 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6219.13963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G3U1_ECTSI2.120e-3272.22Sphingosine-1-phosphate phosphatase n=1 Tax=Ectoca... [more]
A0A2C9JVA6_BIOGL1.790e-1045.95acidPPc domain-containing protein n=1 Tax=Biomphal... [more]
A0A210PIP2_MIZYE2.000e-948.05Sphingosine-1-phosphate phosphatase 1 n=2 Tax=Mizu... [more]
UPI0018A77FC81.310e-845.07sphingosine-1-phosphate phosphatase 2-like n=3 Tax... [more]
UPI001C7161203.280e-843.66sphingosine-1-phosphate phosphatase 2-like n=1 Tax... [more]
UPI0014256A3C4.870e-739.44sphingosine-1-phosphate phosphatase 2-like n=2 Tax... [more]
A0A7M5WQR1_9CNID1.720e-645.59acidPPc domain-containing protein n=1 Tax=Clytia h... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6219contigH-paniculata_contig6219:7391..9979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue2e-27
Seed eggNOG ortholog2880.D7G3U1
Preferred nameSGPP2
KEGG rclassRC00017
KEGG koko:K04716,ko:K04717
KEGG ReactionR06520
KEGG Pathwayko00600,ko04071,map00600,map04071
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006668,GO:0006670,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0009058,GO:0009987,GO:0012501,GO:0012505,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019751,GO:0023052,GO:0030148,GO:0031974,GO:0031981,GO:0031984,GO:0034311,GO:0035556,GO:0042175,GO:0042392,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046519,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070780,GO:0071704,GO:0097164,GO:0097190,GO:0097191,GO:0097193,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1901615
EggNOG free text desc.sphingosine-1-phosphate phosphatase activity
EggNOG OGsCOG0671@1,KOG2822@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size531
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6219.13963.1prot_H-paniculata_contig6219.13963.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6219 7516..9948 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.8533802-UTR-H-paniculata_contig6219:7390..75151622930707.8533802-UTR-H-paniculata_contig6219:7390..7515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6219 7391..7515 -
1691481416.178741-UTR-H-paniculata_contig6219:7390..75151691481416.178741-UTR-H-paniculata_contig6219:7390..7515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6219 7391..7515 -
1622930707.9175317-UTR-H-paniculata_contig6219:9948..99791622930707.9175317-UTR-H-paniculata_contig6219:9948..9979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6219 9949..9979 -
1691481416.2172868-UTR-H-paniculata_contig6219:9948..99791691481416.2172868-UTR-H-paniculata_contig6219:9948..9979Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6219 9949..9979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.8704398-CDS-H-paniculata_contig6219:7515..75841622930707.8704398-CDS-H-paniculata_contig6219:7515..7584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6219 7516..7584 -
1691481416.1890895-CDS-H-paniculata_contig6219:7515..75841691481416.1890895-CDS-H-paniculata_contig6219:7515..7584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6219 7516..7584 -
1622930707.8843293-CDS-H-paniculata_contig6219:8269..84771622930707.8843293-CDS-H-paniculata_contig6219:8269..8477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6219 8270..8477 -
1691481416.1978452-CDS-H-paniculata_contig6219:8269..84771691481416.1978452-CDS-H-paniculata_contig6219:8269..8477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6219 8270..8477 -
1622930707.898132-CDS-H-paniculata_contig6219:9850..99481622930707.898132-CDS-H-paniculata_contig6219:9850..9948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6219 9851..9948 -
1691481416.206924-CDS-H-paniculata_contig6219:9850..99481691481416.206924-CDS-H-paniculata_contig6219:9850..9948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6219 9851..9948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6219.13963.1

>prot_H-paniculata_contig6219.13963.1 ID=prot_H-paniculata_contig6219.13963.1|Name=mRNA_H-paniculata_contig6219.13963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MWGVSKADQGLYRSLRELMYSMVLSKRLLGYVRSLQAACGISADGLPSYP
ALHAIFSLASTLGDEAFYTVALPLCAWLLDLALSRRLALFWASTYYVGQA
AKDIFMLPRPPFPVVPLERRYSAE*
back to top

mRNA from alignment at H-paniculata_contig6219:7391..9979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6219.13963.1 ID=mRNA_H-paniculata_contig6219.13963.1|Name=mRNA_H-paniculata_contig6219.13963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2589bp|location=Sequence derived from alignment at H-paniculata_contig6219:7391..9979- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAATCGTGGACTGTGTAGGGTCGGAAAGATCATGTGGGGAGTATCCAAGG
CAGATCAAGGATTGTATCGGAGTTTGAGAGAGCTTATGTACAGCATGGTC
TTGTCCAAGCGCTTGCTGGGCTATGTGAGGTAAGCCAGAACAATTTAATT
TTCCACAATTTCAAATGACATGTTGGATAGTTACACTCCGCCCATCGCGC
AGCACTCTGAGATATCCCATCTGCCTCGGTGCTGCGGTAAGGACTGAACG
GGCGCTTCTGTCATTGATCATCCTAGACCGCGCATTGTCTTTGAACGAGA
TATCCATGTGTGGCCTCAACCAGGTAAATACGAGGCAAGGAAGGCAGAAC
AAGAACAATACAGTCACAGTCAATTTGATATTTTGGGGTGGAAAATGACG
ACATAAATCCAGGCCCGATCCAGGCTTTTATCAAGATGTTTTATTGTTCC
ACTGACTGTTAGCATGCGGTGCAGATAGTCGTGCACACAATGACATGACA
GAGTCGATGCAATAGTAGAGACGGCGACAAACTGTTGCCCACCATGTTTT
GAAAAGCTCACGAAAGAGATTATTTTTTTTGTTTTTTTTGTCTGTTCAGT
CCCGCAGGCATATCTCTCCCTCAACGGCGTGCCCCTTAGTGCGGTTTTAT
CACCATGTTGTGCGCGATATGGCCCATCGTTCACCGAAAGAGGAGCTGCT
TCGGTTGGGGGCCGCAAAGTTGAAAACATAGAAGTGCTTGCTTTTAAAAT
GGATACTACAACTTTGAACGACATCATCACTGCGTGCTCGAAATAGCCCG
GTTTTCATCTAGAATTGGTTCATCACTTGGTCCAATTTTCAGCGTGCCGT
GGTTCGTTTGGCCGTCGTTTTCGCTGGATCGCGTACTTTCGACACATGAT
CCACCGATGGTCTGGGGATCGTATTGTGCTGCAGGATCTGTTACTTGTAG
AAATCGCTACCATTGCACAGTCCAGTAGCCACCGCGATAAGTTCTTGTAT
ACATCTATCCGTTATTAATAATTAATACCTCCTCTGGCGAATAGAACGAC
TATCAGGGGAAGAAAATATTGCGTAGATCGTTGGTATTCTCCAATCGAAA
CGAGCAACACTAGGTACACGTCACAAGCGAGTTCCGATAAATGAATCGTT
GATCGAACGGTATCTCCCTCTTTTGTGTGTCGTGAGCCTGTAATCCGACC
TTGTATGTATTGAAGATATCATAGTAATCGTACGGGCTGTTCTATTTGCA
AACAATACGGTCTGCTCGGTTTTGTCACAATGTTACCACTAAACAAATCC
GCTGCTTCATCCGTCGGCTACCGTTCAACATTTTTTTTTTTGCTTGTTCG
CCTCACATATATTTTTCGTTTGTCACTTCCGTCATCCCTTGTTCCGTGTG
TGCTTTCGTCATCATTATCGACATCATCTTCTTCACGACCTCTATCAATA
TCATCATATCACCATCACCAACCACCATCACCACCACGATCACCATGATC
AGATCCTTGCAGGCTGCGTGCGGGATATCAGCCGACGGGTTGCCCTCTTA
TCCCGCGCTGCACGCCATCTTTTCCCTTGCTTCCACCCTCGGCGATGAGG
CCTTCTACACCGTGGCGTTGCCGCTGTGCGCGTGGCTGCTGGACCTCGCC
CTCTCTCGCCGACTGGCGCTCTTTTGGGCGTCCACCTACTACGTAGGGCA
AGCCGCGAAGGTGACCATGCACGGAACGGAAGCGTTACAGCTGCATGAGC
GGGCGAGAGGAGTTGGAGGGGGAGGGCGGACGGAGGAGAGGAAGAGGGAC
CGTACTCACGCTTTTCATGCAATAGTTGTTAAACCATCGACCACGCGTAC
TCGGGTGGACGAAGTAGAGCGATGTCCGATGGCCAATCGCTCTTTCTTAC
GTCGTCAATTTTGGCTCAACAATATTTTACCCAACCTATTTACCCCAACC
CTCGCCTGTTCAAATCCATTTCTATTTCTTAGAACATATGTCATCTTTTA
GCTATTTCAGGATTCTAAACCTCTCTGTCGCATCCTTTCTATTTCCCCCG
ATTCACTTATATAAGTTTATCTCTCTTTCTCATATTATTATTACTTTCCA
GTATTGTAGTGATATTTTTTCGTTGTGTGGCGCCGTATTTTTATTATTGT
TTTGCATTTTCGTTGCAAGAGTGAAACTCACCTTCACAAACCGTTCTTGC
AGTGTTGTTGTTGCTGCTATTGGGAATTTCCAATCATGTTGTCATCTTTA
TTGTCATTATCCAGTTGTTATTGTTGTTGTTGTTGTTGTTGTTGTTGCTG
CTGTTAATTGTTGATGTAGACACAGTTTCCATACTGTACTTACTAACTCC
ACATAACCTTCCCCGCATTTTTTAACCCTTGCTTTGCGTGAGCAGGATAT
TTTTATGTTGCCGAGACCTCCGTTTCCCGTGGTTCCCCTGGAGCGCCGCT
ATTCCGCAGAGTGAGTTTGCGTTCGCGATTCGACAGATATTCATTGCTGC
GATGCTGGAAGCTTGGGTGACTGTCGGAAAGAAAGGCCGCTTGGGCCACA
CAAGAGGCATGAGGCACTGATAATATTTTGCGTGAACTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6219:7391..9979-

>mRNA_H-paniculata_contig6219.13963.1 ID=mRNA_H-paniculata_contig6219.13963.1|Name=mRNA_H-paniculata_contig6219.13963.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig6219:7391..9979- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGGGAGTATCCAAGGCAGATCAAGGATTGTATCGGAGTTTGAGAGA
GCTTATGTACAGCATGGTCTTGTCCAAGCGCTTGCTGGGCTATGTGAGAT
GTGGGGAGTATCCAAGGCAGATCAAGGATTGTATCGGAGTTTGAGAGAGC
TTATGTACAGCATGGTCTTGTCCAAGCGCTTGCTGGGCTATGTGAGATCC
TTGCAGGCTGCGTGCGGGATATCAGCCGACGGGTTGCCCTCTTATCCCGC
GCTGCACGCCATCTTTTCCCTTGCTTCCACCCTCGGCGATGAGGCCTTCT
ACACCGTGGCGTTGCCGCTGTGCGCGTGGCTGCTGGACCTCGCCCTCTCT
CGCCGACTGGCGCTCTTTTGGGCGTCCACCTACTACGTAGGGCAAGCCGC
GAAGATCCTTGCAGGCTGCGTGCGGGATATCAGCCGACGGGTTGCCCTCT
TATCCCGCGCTGCACGCCATCTTTTCCCTTGCTTCCACCCTCGGCGATGA
GGCCTTCTACACCGTGGCGTTGCCGCTGTGCGCGTGGCTGCTGGACCTCG
CCCTCTCTCGCCGACTGGCGCTCTTTTGGGCGTCCACCTACTACGTAGGG
CAAGCCGCGAAGGATATTTTTATGTTGCCGAGACCTCCGTTTCCCGTGGT
TCCCCTGGAGCGCCGCTATTCCGCAGAGTGAGATATTTTTATGTTGCCGA
GACCTCCGTTTCCCGTGGTTCCCCTGGAGCGCCGCTATTCCGCAGAGTGA
back to top