mRNA_H-paniculata_contig6217.13961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6217.13961.1
Unique NamemRNA_H-paniculata_contig6217.13961.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6217.13961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6217contigH-paniculata_contig6217:1801..2228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size430
Cds size378
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.6970007-CDS-H-paniculata_contig6217:1800..21781622930707.6970007-CDS-H-paniculata_contig6217:1800..2178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6217 1801..2178 +
1691481416.1316104-CDS-H-paniculata_contig6217:1800..21781691481416.1316104-CDS-H-paniculata_contig6217:1800..2178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6217 1801..2178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.7115924-UTR-H-paniculata_contig6217:2178..22281622930707.7115924-UTR-H-paniculata_contig6217:2178..2228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6217 2179..2228 +
1691481416.140812-UTR-H-paniculata_contig6217:2178..22281691481416.140812-UTR-H-paniculata_contig6217:2178..2228Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6217 2179..2228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6217.13961.1prot_H-paniculata_contig6217.13961.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6217 1801..2178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6217.13961.1

>prot_H-paniculata_contig6217.13961.1 ID=prot_H-paniculata_contig6217.13961.1|Name=mRNA_H-paniculata_contig6217.13961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
LCRVVCRREVSPCASHGTPTAHVHACHNSSIGRQSLSPFQKRCTRKRHDR
TRRKWRKLVFVAVLLLMALSTAKRLLPPFGPRRALACRHDLCTRQRGVFS
VFRFAHMRRNFMSPVISNQVSKRFK*
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mRNA from alignment at H-paniculata_contig6217:1801..2228+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6217.13961.1 ID=mRNA_H-paniculata_contig6217.13961.1|Name=mRNA_H-paniculata_contig6217.13961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=428bp|location=Sequence derived from alignment at H-paniculata_contig6217:1801..2228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCCGTGTCGTTTGCCGCCGAGAGGTTTCCCCTTGCGCTTCTCACGG
CACTCCCACTGCCCATGTCCATGCTTGTCACAATTCCAGCATTGGACGCC
AAAGTCTTTCTCCGTTTCAGAAACGTTGCACTCGAAAGCGGCATGACCGC
ACACGCCGCAAATGGCGCAAACTGGTCTTCGTTGCCGTCCTCCTCTTGAT
GGCTCTCTCAACCGCGAAACGCCTGCTTCCACCCTTTGGTCCTCGTCGCG
CTCTCGCTTGCCGTCACGATTTATGTACTCGTCAGAGGGGGGTGTTCTCG
GTTTTTCGCTTTGCTCATATGCGGCGCAATTTCATGTCGCCAGTGATCTC
GAATCAGGTGTCGAAACGCTTCAAATGACATTAGCCCGCGCGATCTAATG
ACAGTTCGTACCATAGCGTAGTCGTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6217:1801..2228+

>mRNA_H-paniculata_contig6217.13961.1 ID=mRNA_H-paniculata_contig6217.13961.1|Name=mRNA_H-paniculata_contig6217.13961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig6217:1801..2228+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGCCGTGTCGTTTGCCGCCGAGAGGTTTCCCCTTGCGCTTCTCACGG
CACTCCCACTGCCCATGTCCATGCTTGTCACAATTCCAGCATTGGACGCC
AAAGTCTTTCTCCGTTTCAGAAACGTTGCACTCGAAAGCGGCATGACCGC
ACACGCCGCAAATGGCGCAAACTGGTCTTCGTTGCCGTCCTCCTCTTGAT
GGCTCTCTCAACCGCGAAACGCCTGCTTCCACCCTTTGGTCCTCGTCGCG
CTCTCGCTTGCCGTCACGATTTATGTACTCGTCAGAGGGGGGTGTTCTCG
GTTTTTCGCTTTGCTCATATGCGGCGCAATTTCATGTCGCCAGTGATCTC
GAATCAGGTGTCGAAACGCTTCAAATGACTGTGCCGTGTCGTTTGCCGCC
GAGAGGTTTCCCCTTGCGCTTCTCACGGCACTCCCACTGCCCATGTCCAT
GCTTGTCACAATTCCAGCATTGGACGCCAAAGTCTTTCTCCGTTTCAGAA
ACGTTGCACTCGAAAGCGGCATGACCGCACACGCCGCAAATGGCGCAAAC
TGGTCTTCGTTGCCGTCCTCCTCTTGATGGCTCTCTCAACCGCGAAACGC
CTGCTTCCACCCTTTGGTCCTCGTCGCGCTCTCGCTTGCCGTCACGATTT
ATGTACTCGTCAGAGGGGGGTGTTCTCGGTTTTTCGCTTTGCTCATATGC
GGCGCAATTTCATGTCGCCAGTGATCTCGAATCAGGTGTCGAAACGCTTC
AAATGA
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