mRNA_H-paniculata_contig62140.13960.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62140.13960.1
Unique NamemRNA_H-paniculata_contig62140.13960.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig62140.13960.1 vs. uniprot
Match: A0A445M2Q0_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M2Q0_GLYSO)

HSP 1 Score: 54.7 bits (130), Expect = 2.560e-6
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   19 ESWICDSGATGHATPSAANMSSYRQVK-ETLWIASGQVIPIVGRGNLNMTFRTSKGNVPLCVLNVAHAPELHYNLFPLRKVADAGN 273
            +SWI DSGA+ H TPS   +S+Y   +   +++A G+ + IVGRG++N+  +TS G++   + NV H P L  NL  + ++ D G+
Sbjct:  265 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 347
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BLAST of mRNA_H-paniculata_contig62140.13960.1 vs. uniprot
Match: A0A445M280_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445M280_GLYSO)

HSP 1 Score: 54.7 bits (130), Expect = 2.600e-6
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   19 ESWICDSGATGHATPSAANMSSYRQVK-ETLWIASGQVIPIVGRGNLNMTFRTSKGNVPLCVLNVAHAPELHYNLFPLRKVADAGN 273
            +SWI DSGA+ H TPS   +S+Y   +   +++A G+ + IVGRG++N+  +TS G++   + NV H P L  NL  + ++ D G+
Sbjct: 1161 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 1243
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BLAST of mRNA_H-paniculata_contig62140.13960.1 vs. uniprot
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVU7_CAJCA)

HSP 1 Score: 50.8 bits (120), Expect = 5.300e-5
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   19 ESWICDSGATGHATPSAANMSSYRQVK-ETLWIASGQVIPIVGRGNLNMTFRTSKGNVPLCVLNVAHAPELHYNLFPLRKVADAGNK 276
            ESWI DSGA+ H TPS   +++Y   +   +++A G+ + IVG+G++    RTS G+    + NV H P L  NL  + ++ D G++
Sbjct:  288 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDI--AIRTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGHE 371
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BLAST of mRNA_H-paniculata_contig62140.13960.1 vs. uniprot
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TNK0_CAJCA)

HSP 1 Score: 50.8 bits (120), Expect = 5.720e-5
Identity = 32/87 (36.78%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:   19 ESWICDSGATGHATPSAANMSSYRQVK-ETLWIASGQVIPIVGRGNLNMTFRTSKGNVPLCVLNVAHAPELHYNLFPLRKVADAGNK 276
            ESWI DSGA+ H TPS   +++Y   +   +++A G+ + IVG+G++    RTS G+    + NV H P L  NL  + ++ D G++
Sbjct:  266 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDI--AIRTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGHE 349
[Close]
BLAST of mRNA_H-paniculata_contig62140.13960.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.210e-5
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:   16 EESWICDSGATGHATPSAANMSSYRQVKETLWIASGQVIPIVGRGNLNMTFRTSKGNVPLCVL--NVA-----HAPELHYNL 240
            ++ WI DSGAT   TP+    S Y   K++L +A G+++ ++G G L + F  S+ + P  V   NV      H P+L +NL
Sbjct:  362 KDHWIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNL 443
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62140.13960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A445M2Q0_GLYSO2.560e-638.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A445M280_GLYSO2.600e-638.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QVU7_CAJCA5.300e-536.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TNK0_CAJCA5.720e-536.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A485L7G2_9STRA7.210e-535.37Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62140contigH-paniculata_contig62140:148..477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue4.5e-07
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.65557-CDS-H-paniculata_contig62140:147..4771622930707.65557-CDS-H-paniculata_contig62140:147..477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62140 148..477 +
1691481416.117908-CDS-H-paniculata_contig62140:147..4771691481416.117908-CDS-H-paniculata_contig62140:147..477Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62140 148..477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62140.13960.1prot_H-paniculata_contig62140.13960.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62140 148..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62140.13960.1

>prot_H-paniculata_contig62140.13960.1 ID=prot_H-paniculata_contig62140.13960.1|Name=mRNA_H-paniculata_contig62140.13960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
GVGVEEESWICDSGATGHATPSAANMSSYRQVKETLWIASGQVIPIVGRG
NLNMTFRTSKGNVPLCVLNVAHAPELHYNLFPLRKVADAGNKYECDRIIV
YLNNGGVLDM
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mRNA from alignment at H-paniculata_contig62140:148..477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62140.13960.1 ID=mRNA_H-paniculata_contig62140.13960.1|Name=mRNA_H-paniculata_contig62140.13960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig62140:148..477+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTTGGAGTAGAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGG
TCACGCAACACCATCTGCGGCTAACATGTCTAGCTATCGGCAAGTCAAAG
AGACGCTGTGGATAGCGTCAGGACAAGTGATCCCGATTGTTGGTCGGGGG
AACCTGAACATGACATTTAGGACGAGTAAAGGAAATGTGCCTCTCTGTGT
TCTGAATGTCGCACATGCCCCTGAACTTCACTACAATTTATTTCCGCTGA
GGAAAGTGGCCGATGCCGGTAACAAATATGAGTGTGATCGAATTATTGTT
TACCTGAACAATGGTGGAGTACTTGACATG
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Coding sequence (CDS) from alignment at H-paniculata_contig62140:148..477+

>mRNA_H-paniculata_contig62140.13960.1 ID=mRNA_H-paniculata_contig62140.13960.1|Name=mRNA_H-paniculata_contig62140.13960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig62140:148..477+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGTTGGAGTAGAGGAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGG
TCACGCAACACCATCTGCGGCTAACATGTCTAGCTATCGGCAAGTCAAAG
AGACGCTGTGGATAGCGTCAGGACAAGTGATCCCGATTGTTGGTCGGGGG
AACCTGAACATGACATTTAGGACGAGTAAAGGAAATGTGCCTCTCTGTGT
TCTGAATGTCGCACATGCCCCTGAACTTCACTACAATTTATTTCCGCTGA
GGAAAGTGGCCGATGCCGGTAACAAATATGAGTGTGATCGAATTATTGTT
TACCTGAACAATGGTGGAGTACTTGACATGGGCGTTGGAGTAGAGGAAGA
GTCGTGGATTTGTGATAGTGGGGCCACAGGTCACGCAACACCATCTGCGG
CTAACATGTCTAGCTATCGGCAAGTCAAAGAGACGCTGTGGATAGCGTCA
GGACAAGTGATCCCGATTGTTGGTCGGGGGAACCTGAACATGACATTTAG
GACGAGTAAAGGAAATGTGCCTCTCTGTGTTCTGAATGTCGCACATGCCC
CTGAACTTCACTACAATTTATTTCCGCTGAGGAAAGTGGCCGATGCCGGT
AACAAATATGAGTGTGATCGAATTATTGTTTACCTGAACAATGGTGGAGT
ACTTGACATG
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