mRNA_H-paniculata_contig62135.13959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62135.13959.1
Unique NamemRNA_H-paniculata_contig62135.13959.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 3.450e-66
Identity = 124/254 (48.82%), Postives = 167/254 (65.75%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLSDK----------PVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAALFTRAVL 729
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+ L A+L  +F T   GE +W+ GCA  RD+  G   +S            P R A+GS++W+S  +RPD++ AVRAVAR AH P  RHW A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSV+G+A  +GG+VVS  S TQ  V+LS++EAEY+A  +G K ALF RAVL
Sbjct:  678 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMGEEWPAREAIGSMVWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVAGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVL 929          
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.130e-59
Identity = 123/282 (43.62%), Postives = 164/282 (58.16%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAALFTRAVL 729
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA YAD+   RRSV+G+AV +GG+VVS  S TQ  V+LSTSEAEY+A  +G K ALF RAVL
Sbjct:  877 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1157          
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 1.230e-59
Identity = 123/282 (43.62%), Postives = 164/282 (58.16%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRGDEDLS--------------------------------------DKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAALFTRAVL 729
            ++++ +A+YGLKQ+GR W      +LV++ G  Q ++DPCVFR   +G V  I+ ++VDD++  G   + + L  +LR        GE  WY GCA  RD+  G   LS                                      DKPVR A+G L+W +  TRPDIA+A+ AV R AH PT R WKA+V+I+SYL  T DLG+ + RG  L+L VYVDA YAD+   RRSV+G+AV +GG+VVS  S TQ  V+LSTSEAEY+A  +G K ALF RAVL
Sbjct: 1430 VLKVERALYGLKQSGREWGFEAANILVDS-GYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVL 1710          
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 7.710e-56
Identity = 119/283 (42.05%), Postives = 154/283 (54.42%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAALFTRAV 726
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AVRAVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADYA K+  RRSVSG  VM GG  +S  S TQ CV LST+EAEYV++A   K  LF R V
Sbjct:   68 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 349          
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 6.420e-55
Identity = 107/236 (45.34%), Postives = 149/236 (63.14%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAA 708
            I +  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG    C+     +      +   +    G        R DE+  + PVR A+GS++W+S  +RPD++ AVRAVAR AH P  R+W A+ KI+ YLK T+DLG+ ++RG  L L+VYVDA YAD  + RRSVSG+A  +GG+V+S  S TQ  V+LS++EAEY+A   G K A
Sbjct:  178 IAKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEECQCMVERFDVKSTSRIPATPGADLGPK--REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVLSHGSKTQSIVSLSSTEAEYIAAEDGVKEA 409          
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 8.320e-55
Identity = 112/279 (40.14%), Postives = 155/279 (55.56%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAALFTR 720
            +V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  EF     GE  WY GCA   D+  G                                      DE   DKPVR A+G L+W   +TRPDIA  +  + + AH+PT R W A+V+I+SYL  TKD G+ + RG  L+ SV+VDA YAD    RRS +G+AV +GG+VV A++ TQ   A STSEAE++A  +G K ALF R
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKEFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDRSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPLTAQSTSEAEHMAAGEGVKEALFVR 281          
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5JWY8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWY8_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 9.790e-55
Identity = 114/282 (40.43%), Postives = 157/282 (55.67%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAALFTRAVL 729
            +V++ +A+Y LKQ+GR W     + L+ N G  Q + DPCVFR   +G V  ++ ++VDD++VA    + + LFA+L  +F     GE  WY GCA   D+  G                                      DE   DKPVR A+G L+W   +TRPDIA  +  + + A +PT R W A+V+I+SYL  TKD G+ + RG  L+LSV+VDA YAD    RRS +G+AV +GG+VV A++ TQ   A STSEAEY+A  +G K ALF R VL
Sbjct:    5 VVKVERALYRLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYDGCAIVMDVENGITKLSQTAYVESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTK-LTRPDIALPLNKLQKIAQSPTGRIWNALVRIMSYLNFTKDFGITYVRGSGLDLSVFVDASYADNEVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTSEAEYMAAGEGVKEALFVRGVL 284          
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5KLY3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY3_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 1.160e-54
Identity = 111/245 (45.31%), Postives = 153/245 (62.45%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDI--VRGDEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAALFTRAVL 729
            IV+  +A+YGLKQ+GR W     + LV N G  Q K+DPCVFR   + VV MI+ ++VDD++VAG            R + Q+T      ++      D+   R +E   + PVR A+GS++W+S  +RPD++ AV AV R AH P  RHW A+ KI+ YL  T+ LG+ ++RG  L L+VYVDA YAD  + RRSVSG+A  +GG+VVS  S  Q  V+L ++EAEY+A  +G K ALF RAVL
Sbjct:   45 IVKAERAIYGLKQSGRQWGYHAADTLVEN-GFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGM---------VRRFDVQSTS-----HIPATPGADLGPKRDNEKGGEWPVREAIGSMVWVSTFSRPDVSFAVPAVVRHAHAPAKRHWDAIQKILGYLTGTRYLGITYQRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKMQTIVSLYSTEAEYIAAGEGVKEALFVRAVL 273          
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.260e-54
Identity = 119/283 (42.05%), Postives = 154/283 (54.42%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAALFTRAV 726
            IV+LNK++YGLKQA R W   L   L+  +G  Q  +D CVFRL + G V + L VHVDD+   G+  +CD     L         G+L+WY GC + RD   G                                      DE++   P R  +GSL+WL+  TRPDIA+AVRAVAR   +P + HW+A + I+ Y+ RT DLG+ F RG    L++ V+VDADYA K+  RRSVSG  VM GG  +S  S TQ CV LST+EAEYV++A   K  LF R V
Sbjct:  242 IVKLNKSLYGLKQASRQWHSHLARCLIC-LGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQV 523          
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 3.360e-53
Identity = 120/284 (42.25%), Postives = 156/284 (54.93%), Query Frame = 1
Query:    1 IVRLNKAMYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVHVDDVIVAGKSVKCDSLFAALRAEFQTTR-GELKWYLGCAFWRDIVRG--------------------------------------DEDLSDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIISYLKRTKDLGLVFERGR--DLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVVSATSTTQHCVALSTSEAEYVAMAQGAKAALFTRAVL 729
            IVRLNK++YGLKQA R + KRLV  L+  +G  QS SDPCV R      V  I+ +HVDD++ AG     + +  AL     T   GE++++LGCAF RD   G                                      DE+  D P R  VG L+W++  TRP+ ++AVR VAR +H P    WKA  KI+SYLK T  L L +++    D+   VYVDAD+A K+  RRSVSG  V++ G +VS  S TQ CV+LSTSEAEY+AM  G K ALF   +L
Sbjct:  354 IVRLNKSLYGLKQASRTFYKRLVSDLLR-IGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGML 636          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62135.13959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTV6_9PHAE3.450e-6648.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE1.130e-5943.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.230e-5943.62Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE7.710e-5642.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KFN5_9PHAE6.420e-5545.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW89_9PHAE8.320e-5540.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWY8_9PHAE9.790e-5540.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KLY3_9PHAE1.160e-5445.31Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE2.260e-5442.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE3.360e-5342.25Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62135contigH-paniculata_contig62135:1..843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score139.8
Seed ortholog evalue1.6e-30
Seed eggNOG ortholog7029.ACYPI061271-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons2
Model size729
Cds size708
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62135.13959.1prot_H-paniculata_contig62135.13959.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62135 22..843 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.585049-UTR-H-paniculata_contig62135:0..211622930707.585049-UTR-H-paniculata_contig62135:0..21Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62135 1..21 +
1691481416.0884047-UTR-H-paniculata_contig62135:0..211691481416.0884047-UTR-H-paniculata_contig62135:0..21Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62135 1..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.5964136-CDS-H-paniculata_contig62135:21..3091622930707.5964136-CDS-H-paniculata_contig62135:21..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62135 22..309 +
1691481416.0993786-CDS-H-paniculata_contig62135:21..3091691481416.0993786-CDS-H-paniculata_contig62135:21..309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62135 22..309 +
1622930707.6156876-CDS-H-paniculata_contig62135:423..8431622930707.6156876-CDS-H-paniculata_contig62135:423..843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62135 424..843 +
1691481416.1081789-CDS-H-paniculata_contig62135:423..8431691481416.1081789-CDS-H-paniculata_contig62135:423..843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62135 424..843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62135.13959.1

>prot_H-paniculata_contig62135.13959.1 ID=prot_H-paniculata_contig62135.13959.1|Name=mRNA_H-paniculata_contig62135.13959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=236bp
MYGLKQAGRMWSKRLVEVLVNNVGMTQSKSDPCVFRLEKNGVVDMILCVH
VDDVIVAGKSVKCDSLFAALRAEFQTTRGELKWYLGCAFWRDIVRGDEDL
SDKPVRSAVGSLIWLSGMTRPDIASAVRAVARQAHNPTDRHWKAVVKIIS
YLKRTKDLGLVFERGRDLNLSVYVDADYADKSNWRRSVSGVAVMLGGSVV
SATSTTQHCVALSTSEAEYVAMAQGAKAALFTRAVL
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mRNA from alignment at H-paniculata_contig62135:1..843+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62135.13959.1 ID=mRNA_H-paniculata_contig62135.13959.1|Name=mRNA_H-paniculata_contig62135.13959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=843bp|location=Sequence derived from alignment at H-paniculata_contig62135:1..843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGTAAGGCTGAATAAGGCTATGTATGGGCTCAAGCAGGCAGGACGGAT GTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAACAACGTCGGCATGACGC AATCCAAGTCTGACCCTTGTGTGTTTAGGCTCGAGAAAAATGGGGTGGTA GATATGATTCTGTGTGTTCATGTAGATGATGTAATTGTTGCTGGTAAAAG TGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAGGGCGGAGTTCCAAACCA CGAGAGGCGAACTCAAGTGGTACCTGGGTTGTGCATTTTGGCGTGACATA GTGAGGGGAGTTGTCCGCATCACGCAACGGACATTCGTTGATACTGTCGT TAAACGCTTCGACGTGGAAACCGAGTCTAACCTTCCTGCGTCTCAGCAGG CAGATCTTGGGCCTAGGAGGGAGGATGAGGATTTGTCTGACAAGCCTGTG CGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACCTGA CATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCGCACAATCCGACAG ATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGAACA AAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTCAGT TTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAGGCGTTCAGTTT CAGGCGTGGCAGTAATGTTAGGGGGGAGTGTAGTGAGCGCTACCAGCACG ACACAACACTGTGTGGCTCTTTCCACTAGTGAGGCAGAGTACGTAGCTAT GGCGCAAGGGGCTAAGGCAGCACTTTTCACGAGAGCTGTACTA
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Coding sequence (CDS) from alignment at H-paniculata_contig62135:1..843+

>mRNA_H-paniculata_contig62135.13959.1 ID=mRNA_H-paniculata_contig62135.13959.1|Name=mRNA_H-paniculata_contig62135.13959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1416bp|location=Sequence derived from alignment at H-paniculata_contig62135:1..843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGGGCTCAAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGA
AGTACTCGTAAACAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTG
TGTTTAGGCTCGAGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCAT
GTAGATGATGTAATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTT
TGCAGCGTTGAGGGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGT
ACCTGGGTTGTGCATTTTGGCGTGACATAGTGAGGGGAATGTATGGGCTC
AAGCAGGCAGGACGGATGTGGTCAAAGCGCCTTGTAGAAGTACTCGTAAA
CAACGTCGGCATGACGCAATCCAAGTCTGACCCTTGTGTGTTTAGGCTCG
AGAAAAATGGGGTGGTAGATATGATTCTGTGTGTTCATGTAGATGATGTA
ATTGTTGCTGGTAAAAGTGTGAAGTGCGATTCTCTGTTTGCAGCGTTGAG
GGCGGAGTTCCAAACCACGAGAGGCGAACTCAAGTGGTACCTGGGTTGTG
CATTTTGGCGTGACATAGTGAGGGGAGATGAGGATTTGTCTGACAAGCCT
GTGCGCTCGGCTGTTGGGAGTTTGATATGGCTAAGTGGTATGACGAGACC
TGACATAGCCAGTGCAGTACGGGCAGTAGCGAGGCAAGCGCACAATCCGA
CAGATAGGCACTGGAAAGCAGTGGTAAAGATCATCTCGTATCTTAAGAGA
ACAAAAGACTTGGGGCTAGTGTTCGAAAGGGGTAGAGATCTTAATTTGTC
AGTTTATGTAGACGCAGATTATGCGGATAAGTCCAACTGGAGGCGTTCAG
TTTCAGGCGTGGCAGTAATGTTAGGGGGGAGTGTAGTGAGCGCTACCAGC
ACGACACAACACTGTGTGGCTCTTTCCACTAGTGAGGCAGAGTACGTAGC
TATGGCGCAAGGGGCTAAGGCAGCACTTTTCACGAGAGCTGTACTAGATG
AGGATTTGTCTGACAAGCCTGTGCGCTCGGCTGTTGGGAGTTTGATATGG
CTAAGTGGTATGACGAGACCTGACATAGCCAGTGCAGTACGGGCAGTAGC
GAGGCAAGCGCACAATCCGACAGATAGGCACTGGAAAGCAGTGGTAAAGA
TCATCTCGTATCTTAAGAGAACAAAAGACTTGGGGCTAGTGTTCGAAAGG
GGTAGAGATCTTAATTTGTCAGTTTATGTAGACGCAGATTATGCGGATAA
GTCCAACTGGAGGCGTTCAGTTTCAGGCGTGGCAGTAATGTTAGGGGGGA
GTGTAGTGAGCGCTACCAGCACGACACAACACTGTGTGGCTCTTTCCACT
AGTGAGGCAGAGTACGTAGCTATGGCGCAAGGGGCTAAGGCAGCACTTTT
CACGAGAGCTGTACTA
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