mRNA_H-paniculata_contig6213.13957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KT19_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT19_9PHAE) HSP 1 Score: 216 bits (550), Expect = 1.290e-65 Identity = 106/254 (41.73%), Postives = 156/254 (61.42%), Query Frame = 1
Query: 7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
G WRP+ E++P+ L+ V+ S ++ S AG+DG FS L+ I++T G++ F + S W R P+A PP+FW L+ S+L ALG+K P+C+G T RR +A VR+++ KLE++ Q GVAV+GG E + + A+ Q GH ++ DC+N N+ KR AI+ + P L + Y E PA I MD+GER+ I +G+ QGDG+GP LFC + PI+ K R ++D LGV L AY+DD+ L
Sbjct: 34 GSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVTGGVEQVAMDAQLVDQTGHWVVQTDCSNGLNTGKRTAIMAQAAKSVPDLVGCIARCY-ELPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 286
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE) HSP 1 Score: 219 bits (557), Expect = 1.890e-65 Identity = 105/254 (41.34%), Postives = 155/254 (61.02%), Query Frame = 1
Query: 7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
G WRP+ E++P+ L+ V+ ++ S AG+DG FS L+ I++ G++ F + W R P+A PP+FW L+ S+L ALG+K P+C+G T RR +A VR+++ KLE++ Q GVAV+GG E + + A+ HQ GH ++ DC+NAFN+ KR AI+ + P L ++ Y E PA I MD+G R+ I G+ QGDG+GP LFC + PI+ K R ++D LGV L AY+DD+ L
Sbjct: 79 GSAPRWRPETEFDPQVLLQVINRRSSNSGAGNDGQRFSHLKSIVNNKIGREEFSNAMSPLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISL 332
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 228 bits (580), Expect = 2.360e-65 Identity = 109/254 (42.91%), Postives = 160/254 (62.99%), Query Frame = 1
Query: 7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
G WRP+ E++P+ L+ V+ S ++ S AG+DG FS L+ I++T G++ F + S W R P+A PP+FW L+ S+L ALG+K P+C+G T RR +A VR+++ KLE++ Q GVAV+GG E + + A+ HQ GH ++ DC+NAFN+ KR AI+ + P L ++ Y E PA I MD+GER+ I +G+ QGDG+GP LFC + PI+ K R ++D LGV L AY+DD+ L
Sbjct: 378 GSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 631
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5L4Y4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y4_9PHAE) HSP 1 Score: 211 bits (538), Expect = 8.770e-65 Identity = 103/240 (42.92%), Postives = 150/240 (62.50%), Query Frame = 1
Query: 49 ETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
+ L+ V S ++ S AG+DG FS L+ I++T G++ F + S W R P+A PP+FW L+ S+L ALG+K P+C+G T RR +A VR+++ KLE++ Q GVAV+GG E + + A+ HQ GH ++ DC+NAFN+ KR AI+ + P L ++ Y E PA I MD+GER+ I +G+ QGDG+GP LFC + PI+ K R ++D LGV L AY+DD+ L
Sbjct: 3 QVLLQVTNSRSSNSGAGNDGQRFSHLKSIVNTKTGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKRSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISL 242
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.520e-64 Identity = 109/254 (42.91%), Postives = 160/254 (62.99%), Query Frame = 1
Query: 7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
G WRP+ E++P+ L+ V+ S ++ S AG+DG FS L+ I++T G++ F + S W R P+A PP+FW L+ S+L ALG+K P+C+G T RR +A VR+++ KLE++ Q GVAV+GG E + + A+ HQ GH ++ DC+NAFN+ KR AI+ + P L ++ Y E PA I MD+GER+ I +G+ QGDG+GP LFC + PI+ K R ++D LGV L AY+DD+ L
Sbjct: 357 GSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 610
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 224 bits (570), Expect = 1.820e-64 Identity = 108/254 (42.52%), Postives = 158/254 (62.20%), Query Frame = 1
Query: 7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLL 768
G WRP+ E++P+ L+ V+ ++ S AG+DG FS L+ I++T G++ F + S W R + P A PP+FW L S+L ALG+K P+C+G T RR +A VR+++ KLE++ Q GVAV+GG E + + A+ HQ GH ++ DC+NAFN+ KR AI+ + P L ++ Y E PA I MD+GER+ I +G+ QGDG+GP LFC + PI+ K R ++D LGV L AY+DD+ L
Sbjct: 356 GSAPRWRPETEFDPQVLLQVVNRRSSNSGAGNDGPRFSHLKSIVNTKIGREEFSNAMSSLWRRLIKDPHAFPPEFWTLLKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAIDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISL 609
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 221 bits (562), Expect = 4.830e-62 Identity = 104/258 (40.31%), Postives = 161/258 (62.40%), Query Frame = 1
Query: 7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLLLAMGE 780
G WRP++E++P+ LI V+ S ++ S AG+DG FS L+ I +T G++ F + S W R P+ PP+FW L+ S+L ALG+K P+C+G T RR +A VRQ++ KLE++ Q GVAV+GG E + + A+ HQ G+ +I DC+NAFN+ KR AI+ + P L ++ Y E PA + +MD+GER+ + +G+ QGDG+GP LF + + PI+ K ++++ LGV AY+DD+ L + +
Sbjct: 527 GSAPRWRPEEEFDPQVLIEVINSRSSNSGAGNDGQRFSHLKSITNTKIGREDFCGAMSSLWRRLVNDPNTFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVRQWKPKLEEMFREANQFGVAVAGGVERVAMEAQLVHQTGNWIIQTDCSNAFNTGKRTAIMAQAAKSLPDLVGYIARCYDEIPATAVYEMDSGERRTLECTSGVQQGDGMGPPLFSLILIPIILKLQDKYKPLGVAFKAYMDDITLHLKD 784
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 210 bits (535), Expect = 4.130e-60 Identity = 102/239 (42.68%), Postives = 149/239 (62.34%), Query Frame = 1
Query: 49 ETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALGVELLAYLDDLL 765
E V+ S ++ S AG+DG FS L+ I++T G++ F + S W R P+A PP+FW L+ S+L ALG+K P+C+G T RR +A VR+++ KLE++ Q GVAV+GG E + + A+ HQ GH ++ DC+NAFN+ KR AI+ + P L ++ Y E PA I MD+GER+ I +G+ QGDG+GP LFC + PI+ K R ++D LGV L AY+DD++
Sbjct: 2 EARNRVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDII 240
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5KA96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA96_9PHAE) HSP 1 Score: 211 bits (537), Expect = 1.680e-59 Identity = 100/242 (41.32%), Postives = 148/242 (61.16%), Query Frame = 1
Query: 7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALG 732
G WRP+ E++P L+ V+ S ++ AG+DG FS L+ I++T G++ F + S W R P+A PP+FW L+ S+L ALG+K P+C+G T RR +A VR+++ KLE++ Q GVAV+GG E + + A+ HQ GH ++ DC+NAFN+ KR AI+ + P L ++ Y E PA I MD+GE + I +G+ QGDG+GP LFC + PI+ K R ++D LG
Sbjct: 364 GSAPRWRPETEFDPRVLLQVINSRSSNFGAGNDGRRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKLSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGEHRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLG 605
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE) HSP 1 Score: 212 bits (539), Expect = 4.560e-59 Identity = 99/242 (40.91%), Postives = 148/242 (61.16%), Query Frame = 1
Query: 7 GGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAGKKGFDLMVGSFWWRSKEQPDAVPPDFWELFLPSNLTALGKKGHPICVGSTMRRTLATEVVRQYRLKLEDVKLSERQNGVAVSGGAELMGLRAKTHHQLGHSLIALDCTNAFNSIKRVAILEEVVVRTPGLTPFVPERYGEKPAGIISQMDTGERKKISSNTGIHQGDGLGPALFCMPVEPILRKCREQFDALG 732
G WRP+ E++P+ L+ V+ S ++ S AG+DG FS L+ I++T G++ F + S W R P+A PP+FW L+ S+L ALG+K P+C+G T RR +A VR+++ KLE++ Q GVA +GG E + + A+ HQ GH ++ DC+NAFN KR A + + P L ++ Y E PA I MD+GER+ I +G+ QGDG+GP LFC + PI+ K R ++D +G
Sbjct: 365 GSAPRWRPETEFDPQVLLQVINSRSSNSGAGNDGQRFSHLKSIVNTKIGREEFSNAMSSLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAAAGGVEQVAMDAQLVHQTGHWVVQTDCSNAFNMGKRTATMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHIG 606 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6213.13957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6213.13957.1 >prot_H-paniculata_contig6213.13957.1 ID=prot_H-paniculata_contig6213.13957.1|Name=mRNA_H-paniculata_contig6213.13957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=260bp AAGGDATWRPDDEYNPETLIAVMKSENALSAAGSDGLHFSRLQCILSTSAback to top mRNA from alignment at H-paniculata_contig6213:1691..2470+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6213.13957.1 ID=mRNA_H-paniculata_contig6213.13957.1|Name=mRNA_H-paniculata_contig6213.13957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=780bp|location=Sequence derived from alignment at H-paniculata_contig6213:1691..2470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6213:1691..2470+ >mRNA_H-paniculata_contig6213.13957.1 ID=mRNA_H-paniculata_contig6213.13957.1|Name=mRNA_H-paniculata_contig6213.13957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at H-paniculata_contig6213:1691..2470+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |