mRNA_H-paniculata_contig62129.13956.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62129.13956.1
Unique NamemRNA_H-paniculata_contig62129.13956.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.000e-24
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 VYIDNTSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKHLGKHRQRYLIKLINEFRV 228
            VY DNT+ LH  GNR++SSR KH+ALR+FFI++LV E KI+IHYV TE+  ADIGTKH  KHR ++L+ LIN F V
Sbjct: 1591 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNFDV 1666
[Close]
BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.860e-24
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 VYIDNTSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKHLGKHRQRYLIKLINEFRV 228
            VY DNT+ LH  GNR++SSR KH+ALR+FFI++LV E KI+IHYV+TE+  ADIGTKH   HR ++L+ LIN F V
Sbjct:  922 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNFDV 997
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BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.730e-24
Identity = 47/76 (61.84%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 VYIDNTSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKHLGKHRQRYLIKLINEFRV 228
            VY DNT+ LH  GNR++SSR KH+ALR+FFI++LV E KI+IHY  TE+  ADIGTKH  KHR  +L+ LIN F V
Sbjct:  362 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNFDV 437
[Close]
BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.520e-24
Identity = 45/76 (59.21%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 VYIDNTSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKHLGKHRQRYLIKLINEFRV 228
            VY DNT+ LH  GNR++SSR KH+ALR+FFI++LV E KI+IHY  TE+  A IGTKH  KHR ++L+  IN F V
Sbjct:  137 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNFDV 212
[Close]
BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 6.290e-24
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 VYIDNTSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKHLGKHRQRYLIKLINEFRV 228
            VY DNT+ LH  GNR++SSR KH+ALR+FFI++LV E KI+IHYV TE+  ADIGTKH  KHR ++L+ LIN   V
Sbjct:  583 VYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNLDV 658
[Close]
BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 9.400e-22
Identity = 39/72 (54.17%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 VYIDNTSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKHLGKHRQRYLIKLIN 216
            +Y DNT+ LH  GNR++SSR KH+ALR+F+I++L+ E +I+IHY+ T++  ADIGTKHL KHR ++L+ +I+
Sbjct: 1092 LYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163
[Close]
BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.010e-21
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:   16 TSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKH-LGKHRQRYLIKLINEFRV 228
            T+ LH  GNR++SSR KH+ALR+FFI++LV E KI+IHYV TE+  ADIGTKH + KHR ++L+ L+N F V
Sbjct:  189 TATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLMDLVNNFDV 260
[Close]
BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 4.460e-21
Identity = 42/77 (54.55%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:    1 VYIDNTSALHVAGNRT-YSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKHLGKHRQRYLIKLINEFRV 228
            +Y DNT+ LH  GNR+ +SSR KH+ALR+F+I++LV E +I+IHY+ T++  ADIGTKHL KHR ++L+ +I+ F V
Sbjct:  903 LYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSFNV 979
[Close]
BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.240e-21
Identity = 41/76 (53.95%), Postives = 60/76 (78.95%), Query Frame = 1 
Query:    1 VYIDNTSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKHLGKHRQRYLIKLINEFRV 228
            +Y  NT+ LH  GNR++SSR KH+ALR+F+I++LV E +I+IHYV T++  ADIGTKHL K+R ++L+ +I+ F V
Sbjct:  748 LYCGNTATLHALGNRSFSSREKHIALRFFYIRELVSEGRISIHYVPTDSNPADIGTKHLNKYRLKHLLDIISSFNV 823
[Close]
BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 8.270e-21
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    1 VYIDNTSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQFADIGTKHLGKHRQRYLIKLINEFRV 228
            +Y DNT+ LH  GNR++SSR KH+ALR+FFI+ LV E KI IH+V T++  ADIGTKHL K R ++L+ +I  F V
Sbjct:  280 LYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNFNV 355
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62129.13956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJH6_9PHAE1.000e-2463.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE1.860e-2461.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE4.730e-2461.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMK0_9PHAE5.520e-2459.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JME8_9PHAE6.290e-2461.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K129_9PHAE9.400e-2254.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCX7_9PHAE4.010e-2159.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC00_9PHAE4.460e-2154.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9Q7_9PHAE8.240e-2153.95gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5J9N2_9PHAE8.270e-2156.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62129contigH-paniculata_contig62129:666..896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score62.8
Seed ortholog evalue8.2e-08
Seed eggNOG ortholog7425.NV18911-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,3SKEY@50557,41ZUZ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.403998-CDS-H-paniculata_contig62129:665..8961622930707.403998-CDS-H-paniculata_contig62129:665..896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62129 666..896 -
1691481416.0246308-CDS-H-paniculata_contig62129:665..8961691481416.0246308-CDS-H-paniculata_contig62129:665..896Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62129 666..896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62129.13956.1prot_H-paniculata_contig62129.13956.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62129 666..896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62129.13956.1

>prot_H-paniculata_contig62129.13956.1 ID=prot_H-paniculata_contig62129.13956.1|Name=mRNA_H-paniculata_contig62129.13956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
VYIDNTSALHVAGNRTYSSRVKHVALRYFFIQKLVKESKINIHYVKTENQ
FADIGTKHLGKHRQRYLIKLINEFRV*
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mRNA from alignment at H-paniculata_contig62129:666..896-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62129.13956.1 ID=mRNA_H-paniculata_contig62129.13956.1|Name=mRNA_H-paniculata_contig62129.13956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig62129:666..896- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTACATCGATAACACCTCGGCACTGCACGTCGCAGGCAACCGGACCTA
CAGCTCGCGCGTGAAACACGTAGCACTACGGTACTTCTTCATTCAGAAGC
TGGTCAAGGAGAGCAAAATCAATATCCACTACGTGAAGACAGAGAATCAA
TTCGCTGACATTGGCACCAAGCATCTCGGCAAGCACAGGCAACGTTACCT
CATCAAGTTGATCAACGAGTTTCGGGTTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig62129:666..896-

>mRNA_H-paniculata_contig62129.13956.1 ID=mRNA_H-paniculata_contig62129.13956.1|Name=mRNA_H-paniculata_contig62129.13956.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig62129:666..896- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTACATCGATAACACCTCGGCACTGCACGTCGCAGGCAACCGGACCTA
CAGCTCGCGCGTGAAACACGTAGCACTACGGTACTTCTTCATTCAGAAGC
TGGTCAAGGAGAGCAAAATCAATATCCACTACGTGAAGACAGAGAATCAA
TTCGCTGACATTGGCACCAAGCATCTCGGCAAGCACAGGCAACGTTACCT
CATCAAGTTGATCAACGAGTTTCGGGTTTGAGTGTACATCGATAACACCT
CGGCACTGCACGTCGCAGGCAACCGGACCTACAGCTCGCGCGTGAAACAC
GTAGCACTACGGTACTTCTTCATTCAGAAGCTGGTCAAGGAGAGCAAAAT
CAATATCCACTACGTGAAGACAGAGAATCAATTCGCTGACATTGGCACCA
AGCATCTCGGCAAGCACAGGCAACGTTACCTCATCAAGTTGATCAACGAG
TTTCGGGTTTGA
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