mRNA_H-paniculata_contig62111.13954.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62111.13954.1
Unique NamemRNA_H-paniculata_contig62111.13954.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.820e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:    6 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 97
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.980e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:  273 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 364
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.980e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:  369 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 460
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.070e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:  623 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 714
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.100e-14
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK +PK + CFY+GP+ +                  RNVTW         +A+PS +
Sbjct:  599 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLLPKGESCFYVGPSRDHPRDCHRVLTRAGTIQETRNVTW---------EALPSQL 690
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5JVW7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.900e-14
Identity = 47/102 (46.08%), Postives = 58/102 (56.86%), Query Frame = -2 
Query:  160 DALNRSATTANPEKKSPDEMFYGEIPTI-KLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYN------------------RNVTWRRSIPVTSQQAIPSSM 408
            DALN ++TT+NPEKKSP EM++G  P      PF KP   K KRT KS PKAQ+CFYLGP  N                  RN TW+ S+P  +  A+P S+
Sbjct:   93 DALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTNRDCVRILNEKRRAITTRNFTWQ-SVPA-APAALPQSL 192
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.780e-13
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = -2 
Query:  229 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPA 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YCK++R SK  PK + CFY+GP+
Sbjct:  476 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCKWQRPSKLFPKGESCFYVGPS 535
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5JLU0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.870e-13
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = -2 
Query:  217 ALNRSATTANPEKKSPDEMFYGEIPTI-KLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYNRN 405
            ALN ++TT+NPEKKSP EM++G  P      PF KP   K KRT KS PKAQ+CFYLGP  N N
Sbjct:   83 ALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINTN 146
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5KDR1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR1_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.040e-13
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = -2 
Query:  229 DALNRSATTANPEKKSPDEMFYGEIPTIKLLPFFKPGYCKYKRTSKSMPKAQECFYLGPA 408
            +ALN +A +ANP+ KSP EM+YGE    +  PF KP YC+++R SK +PK + CFY+GP+
Sbjct:   32 EALNHTACSANPDSKSPYEMWYGEARPARPYPFLKPAYCRWQRPSKLLPKGESCFYVGPS 91
[Close]
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Match: A0A6H5JMU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMU6_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.160e-13
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = -2 
Query:  217 ALNRSATTANPEKKSPDEMFYGEIPTI-KLLPFFKPGYCKYKRTSKSMPKAQECFYLGPAYNRN 405
            ALN ++TT+NPEKKSP EM++G  P      PF KP   K KRT KS PKAQ+CFYLGP  N N
Sbjct:  544 ALNCTSTTSNPEKKSPYEMWHGHPPPPGATYPFLKPAVYKVKRTHKSEPKAQKCFYLGPGINNN 607
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62111.13954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV80_9PHAE4.820e-1439.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J594_9PHAE4.980e-1439.60Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE4.980e-1439.60CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE5.070e-1439.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE5.100e-1439.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVW7_9PHAE6.900e-1446.08Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE1.780e-1353.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JLU0_9PHAE1.870e-1359.38Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KDR1_9PHAE2.040e-1351.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMU6_9PHAE3.160e-1359.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62111contigH-paniculata_contig62111:431..893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size409
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62111.13954.1prot_H-paniculata_contig62111.13954.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62111 571..834 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.2448547-UTR-H-paniculata_contig62111:430..5701622930707.2448547-UTR-H-paniculata_contig62111:430..570Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62111 431..570 -
1691481415.9444995-UTR-H-paniculata_contig62111:430..5701691481415.9444995-UTR-H-paniculata_contig62111:430..570Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62111 431..570 -
1622930707.2959137-UTR-H-paniculata_contig62111:834..8931622930707.2959137-UTR-H-paniculata_contig62111:834..893Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62111 835..893 -
1691481415.9855285-UTR-H-paniculata_contig62111:834..8931691481415.9855285-UTR-H-paniculata_contig62111:834..893Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62111 835..893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930707.2651923-CDS-H-paniculata_contig62111:570..6161622930707.2651923-CDS-H-paniculata_contig62111:570..616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62111 571..616 -
1691481415.9586506-CDS-H-paniculata_contig62111:570..6161691481415.9586506-CDS-H-paniculata_contig62111:570..616Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62111 571..616 -
1622930707.2824154-CDS-H-paniculata_contig62111:670..8341622930707.2824154-CDS-H-paniculata_contig62111:670..834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62111 671..834 -
1691481415.9747822-CDS-H-paniculata_contig62111:670..8341691481415.9747822-CDS-H-paniculata_contig62111:670..834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62111 671..834 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62111.13954.1

>prot_H-paniculata_contig62111.13954.1 ID=prot_H-paniculata_contig62111.13954.1|Name=mRNA_H-paniculata_contig62111.13954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MEDSSLPSASDLPDSACSMSASPLSRSCKVSPPPSKKESLAAKLRGLNGA
RLHCDCKRAPSRNIPVLWA*
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mRNA from alignment at H-paniculata_contig62111:431..893-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62111.13954.1 ID=mRNA_H-paniculata_contig62111.13954.1|Name=mRNA_H-paniculata_contig62111.13954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=463bp|location=Sequence derived from alignment at H-paniculata_contig62111:431..893- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCTCAGGCCCCGCCCGAGTTCCCTCCTCACGTGCACCCATCACGGGA
AACTCCCGGATGGAAGATTCCTCACTTCCATCAGCATCCGATCTCCCAGA
CTCGGCCTGCTCGATGTCAGCCTCCCCGCTCTCGAGATCTTGCAAAGTTT
CCCCCCCCCCATCGAAGAAGGAATCGCTTGCTGCGAAGTTACGGGGATTG
AACGGCGCCAGGTTACATTGCGAGTTGTAATCACGTATCTCCCCTTAGTC
TGCATCCGCATTGCATCACGAGGATAGTTGTAAGCGGGCCCCAAGTAGAA
ACATTCCTGTGCTTTGGGCATAGATTTCGACGTCCTCTTATACTTACAGT
ATCCTGGTTTAAAAAAAGGGAGTAACTTGATCGTTGGAATTTCACCATAA
AACATCTCATCCGGGGATTTCTTTTCTGGGTTTGCGGTAGTGGCGGAGCG
ATTTAAAGCATCA
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Coding sequence (CDS) from alignment at H-paniculata_contig62111:431..893-

>mRNA_H-paniculata_contig62111.13954.1 ID=mRNA_H-paniculata_contig62111.13954.1|Name=mRNA_H-paniculata_contig62111.13954.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig62111:431..893- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGATTCCTCACTTCCATCAGCATCCGATCTCCCAGACTCGGCCTG
CTCGATGTCAGCCTCCCCGCTCTCGAGATCTTGCAAAGTTTCCCCCCCCC
CATCGAAGAAGGAATCGCTTGCTGCGAAGTTACGGGGATTGAACGGCGCC
AGGTTACATTGCGAATGGAAGATTCCTCACTTCCATCAGCATCCGATCTC
CCAGACTCGGCCTGCTCGATGTCAGCCTCCCCGCTCTCGAGATCTTGCAA
AGTTTCCCCCCCCCCATCGAAGAAGGAATCGCTTGCTGCGAAGTTACGGG
GATTGAACGGCGCCAGGTTACATTGCGATTGTAAGCGGGCCCCAAGTAGA
AACATTCCTGTGCTTTGGGCATAGTTGTAAGCGGGCCCCAAGTAGAAACA
TTCCTGTGCTTTGGGCATAG
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