mRNA_H-paniculata_contig62086.13948.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62086.13948.1
Unique NamemRNA_H-paniculata_contig62086.13948.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: D8LCY7_ECTSI (Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY7_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.100e-11
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLYPTINSAGPTPRL 159
            VRAIHLE  PFS +NGLLTPT KLKR+Q   AY+ V+  LY  + + GPT RL
Sbjct:  607 VRAIHLEPDPFSAQNGLLTPTFKLKRAQALEAYSKVIAALYAGLEAGGPTSRL 659          
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: A0A5M8FT08_9GAMM (Long-chain fatty acid--CoA ligase n=1 Tax=Thiohalocapsa marina TaxID=424902 RepID=A0A5M8FT08_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 5.440e-10
Identity = 29/41 (70.73%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLY 123
            VRA+HLE  P+STENGLLTPTLKLKR++ +T YA+V+E LY
Sbjct:  626 VRALHLERTPWSTENGLLTPTLKLKRAELETHYAAVIEALY 666          
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: A0A835ZFW5_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.550e-9
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLYPTIN 135
            VR +HLE APF+ ENGLLTPT+KLKR++    YASVL++LY  ++
Sbjct:  658 VRRVHLEPAPFTPENGLLTPTMKLKRAEAAAHYASVLDELYAAVD 702          
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: F9X2E8_ZYMTI (AMP-binding domain-containing protein n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9X2E8_ZYMTI)

HSP 1 Score: 57.8 bits (138), Expect = 2.320e-8
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLYPTINSAGPTPRL 159
            VRA+ L   PFS EN LLTPTLKLKR QT   Y ++++++Y  +N+A P  RL
Sbjct:  649 VRAVRLMLEPFSIENELLTPTLKLKRPQTAKMYRNLIDEMYVEVNAAAPKARL 701          
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: A0A136JIJ8_9PEZI (Long-chain-fatty-acid-CoA ligase n=2 Tax=Microdochium TaxID=67608 RepID=A0A136JIJ8_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 4.340e-8
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLYPTINSAGP 147
            VRA HLE  PF+ +N LLTPTLKLKR QT  A+A+ ++++Y  IN+  P
Sbjct:  652 VRAAHLEIEPFTIDNNLLTPTLKLKRPQTAKAFATEIDRMYEEINATTP 700          
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: A0A061R0V4_9CHLO (Long-chain-fatty-acid--CoA ligase n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R0V4_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 1.520e-7
Identity = 28/45 (62.22%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLYPTIN 135
            V A+HL S PFS ENGLLTPT KLKR Q   A+ SV++ LY  IN
Sbjct:  658 VAAVHLCSEPFSVENGLLTPTFKLKRPQAKEAFRSVIDGLYAGIN 702          
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: C4JMM3_UNCRE (AMP-binding domain-containing protein n=1 Tax=Uncinocarpus reesii (strain UAMH 1704) TaxID=336963 RepID=C4JMM3_UNCRE)

HSP 1 Score: 54.7 bits (130), Expect = 2.840e-7
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLYPTINSAG 144
            V+ I L   PFS +NGLLTPTLKLKR QT  AY  +L++LY T+ S G
Sbjct:  625 VKNIALMVEPFSIDNGLLTPTLKLKRPQTVKAYRDILDELYATVPSNG 672          
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: A0A7E4W672_PANRE (Long-chain-fatty-acid--CoA ligase n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4W672_PANRE)

HSP 1 Score: 54.7 bits (130), Expect = 2.840e-7
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLY 123
            V+AIHLE+ PFS ENGLLTPTLK KR Q    Y  V+E LY
Sbjct:  654 VKAIHLETEPFSIENGLLTPTLKSKRPQLRKKYQQVIESLY 694          
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: T0RA78_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RA78_SAPDV)

HSP 1 Score: 52.4 bits (124), Expect = 3.120e-7
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLY 123
            VRA+HLE+ PFS EN L+TPT KLKR Q    Y++ L+ LY
Sbjct:   63 VRAVHLETEPFSVENDLMTPTFKLKRHQAKVVYSARLDALY 103          
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Match: A0A7S0B0H0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0H0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.570e-7
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    1 VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLYPTI 132
            V+AIHLES PFS ENGL+TPT KLKR Q    Y + +  LY  +
Sbjct:   75 VKAIHLESEPFSAENGLVTPTFKLKRQQLREKYKTEIADLYANL 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62086.13948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY7_ECTSI6.100e-1160.38Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarp... [more]
A0A5M8FT08_9GAMM5.440e-1070.73Long-chain fatty acid--CoA ligase n=1 Tax=Thiohalo... [more]
A0A835ZFW5_9STRA3.550e-960.00Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
F9X2E8_ZYMTI2.320e-852.83AMP-binding domain-containing protein n=5 Tax=Zymo... [more]
A0A136JIJ8_9PEZI4.340e-855.10Long-chain-fatty-acid-CoA ligase n=2 Tax=Microdoch... [more]
A0A061R0V4_9CHLO1.520e-762.22Long-chain-fatty-acid--CoA ligase n=3 Tax=Tetrasel... [more]
C4JMM3_UNCRE2.840e-758.33AMP-binding domain-containing protein n=1 Tax=Unci... [more]
A0A7E4W672_PANRE2.840e-765.85Long-chain-fatty-acid--CoA ligase n=1 Tax=Panagrel... [more]
T0RA78_SAPDV3.120e-758.54Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A7S0B0H0_9STRA3.570e-756.82Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62086contigH-paniculata_contig62086:328..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.292378-CDS-H-paniculata_contig62086:327..4891622930706.292378-CDS-H-paniculata_contig62086:327..489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62086 328..489 +
1691481415.4189117-CDS-H-paniculata_contig62086:327..4891691481415.4189117-CDS-H-paniculata_contig62086:327..489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62086 328..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62086.13948.1prot_H-paniculata_contig62086.13948.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62086 328..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62086.13948.1

>prot_H-paniculata_contig62086.13948.1 ID=prot_H-paniculata_contig62086.13948.1|Name=mRNA_H-paniculata_contig62086.13948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
VRAIHLESAPFSTENGLLTPTLKLKRSQTDTAYASVLEQLYPTINSAGPT
PRL*
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mRNA from alignment at H-paniculata_contig62086:328..489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62086.13948.1 ID=mRNA_H-paniculata_contig62086.13948.1|Name=mRNA_H-paniculata_contig62086.13948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at H-paniculata_contig62086:328..489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCGAGCTATCCACCTTGAGTCCGCCCCGTTCAGCACTGAGAATGGCTT GCTCACACCCACCCTCAAGCTCAAGCGCAGCCAGACCGACACCGCTTACG CTAGTGTTCTCGAGCAATTATACCCCACTATCAACTCAGCGGGACCAACG CCAAGGCTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig62086:328..489+

>mRNA_H-paniculata_contig62086.13948.1 ID=mRNA_H-paniculata_contig62086.13948.1|Name=mRNA_H-paniculata_contig62086.13948.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig62086:328..489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCGAGCTATCCACCTTGAGTCCGCCCCGTTCAGCACTGAGAATGGCTT
GCTCACACCCACCCTCAAGCTCAAGCGCAGCCAGACCGACACCGCTTACG
CTAGTGTTCTCGAGCAATTATACCCCACTATCAACTCAGCGGGACCAACG
CCAAGGCTGTGAGTCCGAGCTATCCACCTTGAGTCCGCCCCGTTCAGCAC
TGAGAATGGCTTGCTCACACCCACCCTCAAGCTCAAGCGCAGCCAGACCG
ACACCGCTTACGCTAGTGTTCTCGAGCAATTATACCCCACTATCAACTCA
GCGGGACCAACGCCAAGGCTGTGA
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