mRNA_H-paniculata_contig62076.13945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62076.13945.1
Unique NamemRNA_H-paniculata_contig62076.13945.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: D7FI75_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI75_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.600e-37
Identity = 67/93 (72.04%), Postives = 80/93 (86.02%), Query Frame = 1
Query:    1 MYHERQQLMYCAMHALNNLFQEPWVDRKLMECLALKLFNREAALREESGMGKMRRNPFKSVIPRVGDYDVSVLLEALKLRKHHVSLHVLFNPK 279
            MYHERQ+LM CAMHALNNLFQEPW +R+LME LAL+L NREA LR ESG+ ++  NP+KSVIP VGDYD++V+LEALKLR+  VSLHV+FN K
Sbjct:    1 MYHERQRLMQCAMHALNNLFQEPWANRELMERLALELGNREATLRSESGLRRLLINPYKSVIPMVGDYDINVVLEALKLRECRVSLHVVFNAK 93          
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: A0A6H5K9J2_9PHAE (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9J2_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.530e-35
Identity = 60/93 (64.52%), Postives = 76/93 (81.72%), Query Frame = 1
Query:    1 MYHERQQLMYCAMHALNNLFQEPWVDRKLMECLALKLFNREAALREESGMGKMRRNPFKSVIPRVGDYDVSVLLEALKLRKHHVSLHVLFNPK 279
            M+HE+Q LM+CA+H LNNLFQE W    LME +A +LFNREA +R+ESGMG+M  NP+KSV+P+VG YD++ LLEAL L+K HVSLH +FNPK
Sbjct:    6 MFHEKQYLMHCAVHTLNNLFQESWATASLMEDIAKELFNREATMRKESGMGRMWVNPYKSVVPQVGYYDINCLLEALNLKKCHVSLHAVFNPK 98          
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: D8LDY3_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.640e-11
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1
Query:  148 MGKMRRNPFKSVIPRVGDYDVSVLLEALKLRKHHVSLHVLFNPK 279
            MG+M  NP+KSV+P+VG YD++ LLEALKL+K H+SLH +FNPK
Sbjct:    1 MGRMWVNPYKSVVPQVGYYDINCLLEALKLKKCHISLHAVFNPK 44          
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: W7TJE7_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJE7_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.440e-11
Identity = 44/105 (41.90%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    4 YHERQQLMYCAMHALNNLFQEPWVDRKLMECLALKLFNREAALREESGMGK--------MRR--NPF-----KSVIPRVGDYDVSVLLEALKLRKHHVSLHVLFN 273
            YHE Q+ + C  H LNNL+Q  W+D   M+ LA  L    AA +  SG  K        +RR  +PF     +S +P +G YDVSVL+EALK+R     +HVL N
Sbjct:   22 YHETQRRLCCGTHTLNNLYQHHWIDTATMDHLASSL---GAADKASSGQHKGSGWLESALRRASDPFAPTAYRSWVPGLGGYDVSVLVEALKMRNARFDMHVLKN 123          
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: A0A836CAV1_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.270e-8
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query:  112 FNREAALREESGMGKMRRNPFKSVIPRVGDYDVSVLLEALKLRKHHVSLHVLFNP 276
            F +E+ALR+ SG+  +  NPFKS +P +G YD+SVL+EAL+ R   VS HV +NP
Sbjct:   12 FAKESALRKASGLSTLWVNPFKSAVPFLGYYDLSVLVEALQTRGVRVSAHVAWNP 66          
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: A0A835QN34_VANPL (Ubiquitinyl hydrolase 1 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QN34_VANPL)

HSP 1 Score: 54.7 bits (130), Expect = 4.890e-7
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    4 YHERQQLMYCAMHALNNLFQEPWVDRKLMECLALKLFNREAALREESGMGKMRRNPFKSVIPR-----VGDYDVSVLLEALKLRKHHVSLH 261
            YHERQ+L +C MHALNNL QE    R  ++ +  KL    AA+  +    K R +PF  V+        G+YD +VL+ AL+ R   V  H
Sbjct:    7 YHERQRLQFCLMHALNNLLQEDSFSRNELDTIGNKL----AAIDPD----KERWSPFSLVLKPHHNALTGNYDANVLISALESRNKRVIWH 89          
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: A0A835QQ23_VANPL (Ubiquitinyl hydrolase 1 n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QQ23_VANPL)

HSP 1 Score: 55.8 bits (133), Expect = 5.140e-7
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query:    4 YHERQQLMYCAMHALNNLFQEPWVDRKLMECLALKLFNREAALREESGMGKMRRNPFKSVIPR-----VGDYDVSVLLEALKLRKHHVSLH 261
            YHERQ+L +C MHALNNL QE    R  ++ +  KL    AA+  + G    R +PF  V+        G+YD +VL+ AL+ R   V  H
Sbjct:    7 YHERQRLQFCLMHALNNLLQEDSFSRNELDTIGNKL----AAIDPDKG----RWSPFSLVLKPHHNALTGNYDANVLISALESRNKRVIWH 89          
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: UPI00106CDBFA (josephin-2-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CDBFA)

HSP 1 Score: 54.3 bits (129), Expect = 6.300e-7
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    1 MYHERQQLMYCAMHALNNLFQEPWVDRKLMECLALKLFNREAALREESGMGKMRRNPFKSVIPRVGDYDVSVLLEALKLRKH 246
            MYHERQ L +CA+H LNNLFQE    ++ ++ +   L N +A +           NP KS+   +G+YDV+VL  AL+L+ +
Sbjct:    1 MYHERQSLQFCALHVLNNLFQERVFSKQELDDICYSL-NPDATI-----------NPHKSMFG-LGNYDVNVLTVALQLKDY 69          
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: A0A7L2DQ96_ANTMN (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Anthoscopus minutus TaxID=156561 RepID=A0A7L2DQ96_ANTMN)

HSP 1 Score: 53.1 bits (126), Expect = 1.070e-6
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    1 MYHERQQLMYCAMHALNNLFQEPWVDRKLMECLALKLFNREAALREESGMGKMRRNPFKSVIPRVGDYDVSVLLEAL 231
            +YHERQ+L  CA+HALNNL Q PW+ +   + +  +L  R             R NP +S +   G+YD++V++ AL
Sbjct:    1 LYHERQRLELCALHALNNLLQRPWLSKAAADGICQRLAPRA------------RPNPHRSPLG-TGNYDINVVMAAL 64          
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Match: UPI001F042748 (josephin-like protein n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F042748)

HSP 1 Score: 53.5 bits (127), Expect = 1.250e-6
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1
Query:    1 MYHERQQLMYCAMHALNNLFQEPWVDRKLMECLALKLFNREAALREESGMGKMRRNPFKSVIPRVGDYDVSVLLEALKLRKHHV 252
            MYHERQ+L +CA+HALNNLFQ     ++ ++ +   L N  A L           NP KS+   +G+YDV+VL  AL+L+ + +
Sbjct:    1 MYHERQRLQFCALHALNNLFQASVFAKQDLDDICNSL-NSHAKL-----------NPHKSIFG-LGNYDVNVLSAALELKHYQL 71          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62076.13945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI75_ECTSI1.600e-3772.04Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K9J2_9PHAE2.530e-3564.52Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDY3_ECTSI1.640e-1165.91Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
W7TJE7_9STRA4.440e-1141.90Ubiquitinyl hydrolase 1 n=2 Tax=Monodopsidaceae Ta... [more]
A0A836CAV1_9STRA1.270e-852.73Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus Ta... [more]
A0A835QN34_VANPL4.890e-739.56Ubiquitinyl hydrolase 1 n=1 Tax=Vanilla planifolia... [more]
A0A835QQ23_VANPL5.140e-739.56Ubiquitinyl hydrolase 1 n=1 Tax=Vanilla planifolia... [more]
UPI00106CDBFA6.300e-740.24josephin-2-like n=1 Tax=Dendronephthya gigantea Ta... [more]
A0A7L2DQ96_ANTMN1.070e-637.66Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Anthosc... [more]
UPI001F0427481.250e-640.48josephin-like protein n=1 Tax=Xenia sp. Carnegie-2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62076contigH-paniculata_contig62076:163..569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size279
Cds size279
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.131028-CDS-H-paniculata_contig62076:162..3311622930706.131028-CDS-H-paniculata_contig62076:162..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62076 163..331 -
1691481415.366972-CDS-H-paniculata_contig62076:162..3311691481415.366972-CDS-H-paniculata_contig62076:162..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62076 163..331 -
1622930706.1446216-CDS-H-paniculata_contig62076:459..5691622930706.1446216-CDS-H-paniculata_contig62076:459..569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62076 460..569 -
1691481415.3758442-CDS-H-paniculata_contig62076:459..5691691481415.3758442-CDS-H-paniculata_contig62076:459..569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62076 460..569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62076.13945.1prot_H-paniculata_contig62076.13945.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62076 163..569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62076.13945.1

>prot_H-paniculata_contig62076.13945.1 ID=prot_H-paniculata_contig62076.13945.1|Name=mRNA_H-paniculata_contig62076.13945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=93bp
MYHERQQLMYCAMHALNNLFQEPWVDRKLMECLALKLFNREAALREESGM
GKMRRNPFKSVIPRVGDYDVSVLLEALKLRKHHVSLHVLFNPK
back to top

mRNA from alignment at H-paniculata_contig62076:163..569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62076.13945.1 ID=mRNA_H-paniculata_contig62076.13945.1|Name=mRNA_H-paniculata_contig62076.13945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=407bp|location=Sequence derived from alignment at H-paniculata_contig62076:163..569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACCATGAACGGCAGCAGCTCATGTACTGCGCCATGCACGCGCTCAA CAATCTTTTCCAAGAGCCTTGGGTGGACCGGAAGCTAATGGAGTGCCTTG CCCTGAAACTGTGAGTTATGTCAATTGTTGGCTGGGTACAGAGATAGATA CGTTACTCGAACTAATATTTTCCGCGCGGCGAAAGGTTTTGCTTCTTGCG CAAAAATATGAATAAATGAACCCCAACTAACACCTCAGATTCAACCGCGA GGCCGCACTGCGGGAGGAGTCTGGCATGGGCAAGATGCGGAGGAACCCAT TCAAGTCTGTGATTCCAAGAGTAGGAGATTACGACGTGAGCGTTTTGCTG GAGGCACTCAAACTCAGGAAACATCACGTCAGCCTCCATGTGCTGTTCAA TCCCAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig62076:163..569-

>mRNA_H-paniculata_contig62076.13945.1 ID=mRNA_H-paniculata_contig62076.13945.1|Name=mRNA_H-paniculata_contig62076.13945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at H-paniculata_contig62076:163..569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACCATGAACGGCAGCAGCTCATGTACTGCGCCATGCACGCGCTCAA
CAATCTTTTCCAAGAGCCTTGGGTGGACCGGAAGCTAATGGAGTGCCTTG
CCCTGAAACTATGTACCATGAACGGCAGCAGCTCATGTACTGCGCCATGC
ACGCGCTCAACAATCTTTTCCAAGAGCCTTGGGTGGACCGGAAGCTAATG
GAGTGCCTTGCCCTGAAACTATTCAACCGCGAGGCCGCACTGCGGGAGGA
GTCTGGCATGGGCAAGATGCGGAGGAACCCATTCAAGTCTGTGATTCCAA
GAGTAGGAGATTACGACGTGAGCGTTTTGCTGGAGGCACTCAAACTCAGG
AAACATCACGTCAGCCTCCATGTGCTGTTCAATCCCAAGATTCAACCGCG
AGGCCGCACTGCGGGAGGAGTCTGGCATGGGCAAGATGCGGAGGAACCCA
TTCAAGTCTGTGATTCCAAGAGTAGGAGATTACGACGTGAGCGTTTTGCT
GGAGGCACTCAAACTCAGGAAACATCACGTCAGCCTCCATGTGCTGTTCA
ATCCCAAG
back to top