mRNA_H-paniculata_contig6207.13944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6207.13944.1
Unique NamemRNA_H-paniculata_contig6207.13944.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: D8LRZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ0_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.390e-50
Identity = 93/151 (61.59%), Postives = 120/151 (79.47%), Query Frame = 1 
Query:  217 KAFECFATARSIDPLDADLYLHRGQGYLIANDFRMAEQDLKRSVELRATLPIAWAAWGVALFKLAVADGQPSPRLISKCLKVMEDALERFPKSCEVLLFFAEVLVSLGDFARALILLRESSLLEPDCPLPYVNAARAYLGMNDLVTARRHL 669
            +AFECF  A +I P D+DL+LHRGQG+L+ANDFR A  DL+RSVEL  T+PI+ AAWGVALFKLA A   PSP  +SKC++V+E++ E FP++ EVL FFAEVL+S+GDF + L  L+ ++ L+P+CP+PYVNAARAYLGMND   ARR +
Sbjct:  691 EAFECFDAAAAIAPRDSDLFLHRGQGHLLANDFRKATADLRRSVELCPTMPISRAAWGVALFKLATAAELPSPSSLSKCVQVLEESRELFPENPEVLFFFAEVLISMGDFKKGLEFLQTAASLDPECPVPYVNAARAYLGMNDTKAARRQV 841
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: A0A835YUV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV6_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.980e-41
Identity = 99/272 (36.40%), Postives = 138/272 (50.74%), Query Frame = 1 
Query:  220 AFECFATARSIDPLDADLYLHRGQGYLIANDFRMAEQDLKRSVELRATLPIAWAAWGVALFKLAVADG-----------------------------------------QPSPRLISKCLKVMEDALERFPKSCEVLLFFAEVLVSLGDFARALILLRESSLLEPDCPLPYVNAARAYLGMNDLVTARRHLERG----------QEVDPGYPGTFMDMGQLLMQEGRPAEALTTYAYGVERARFPSEIHDAISCLEVAKCHLEAQRLLHGEV 882
            A E F  A   DP DAD+YLHRGQ +L+ N+ + A  DL+R+        +A A++G++LFK A A                                              P  + + L++++DA    P S EV LF +EVL  LGDFA AL LL  ++  +P CPLPYVNA RA+ GM DL +ARRHL R           ++VDP   G ++D GQ+  + G   EA+  Y  GV  +R+ SE+HDA++CL +A+ HLEA+      V
Sbjct:  802 ALEWFRLALEADPSDADVYLHRGQYHLLTNNPKAASFDLQRAAGFAEAPAVAQASYGISLFKRAAAPQGSLRRRTEVMRSPPINGALILITVAAARRRDARRRGLQLGMSQEPYRMDQALRILKDASWTHPDSVEVALFHSEVLTHLGDFAGALALLAAAAAKDPSCPLPYVNAGRAFTGMGDLPSARRHLARAMQVRARAPSQEDVDPLCSGAYLDFGQVETRAGHVQEAMRLYEQGVHCSRYLSELHDALACLTIARTHLEAKAYFERRV 1073
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: A0A8H7QZ62_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7QZ62_9FUNG)

HSP 1 Score: 103 bits (256), Expect = 2.710e-20
Identity = 62/205 (30.24%), Postives = 107/205 (52.20%), Query Frame = 1 
Query:  241 ARSIDPLDADLYLHRGQGYLIANDFRMAEQDLKRSVELRATLPIAWAAWGVALFKLAVADGQPSPRLISKCLKVMEDALERFPKSCEVLLFFAEVLVSLGDFARALILLRESSLLEPDCPLPYVNAARA-YLGMNDLVTARRHLERGQEVDPGYPGTFMDMGQLLMQEGRPAEALTTYAYGVERARFPSEIHDAISCLEVAKCHL 852
            A  I+PLD D+Y HRGQ + I+  +++A  D   S+ L +T   A         +LAV + + +   IS+  ++ E  L +FP S EV  ++ EVL+  G   +A+ +  ++  L+P  P+PY+N A   Y  ++    A +  +   + DP        + Q+L+++ RP+EAL  Y   ++ AR  +E+  AIS +E  K  +
Sbjct:  343 AIKINPLDPDIYYHRGQVHYISGQYKLALDDYTESIRLDSTFVYAH-------IQLAVVNHKLNRHSISE--RMFEKILTQFPSSAEVCNYYGEVLIDQGKIQKAVDMFSKAMSLDPSHPVPYINKAMILYQNLSKPDEAIQLCKNALDADPACDAAVASLAQMLIEQDRPSEALIYYQKAIDLARTQTELEHAISYVEATKSQI 538
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: A0A7S2WSB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSB2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.250e-20
Identity = 78/250 (31.20%), Postives = 113/250 (45.20%), Query Frame = 1 
Query:  274 YLHRGQGYLIANDFRMAEQDLKRSVEL-----------------------RATLPIAWAAW----GVALFKLAVADG-------QPSPRLISKCLKVMEDALERFPKSCEVLLFFAEVLVSLGDFARALILLRESS-------------LLEPDCPLPYVNAARAYLGMNDLVTARRHLERGQEVDPGYPGTFMDMGQLLMQEGRPAEALTTYAYGVERARFPSEIHDAISCLEVAKCHLEAQRLLHGEV 882
            YL RGQ  L+ ND      D + +++L                       R T+    AA      VA FKL +  G         S R   +  +++  A+ + P   E+LL   E++   GDF  AL     ++              L   CPLPYVNA RAYL MN+ V A RHLER +EVDP      +D+GQL +Q G    AL ++ +    +R   E+HDA++C +VA  H +A   + G++
Sbjct:  341 YLQRGQLELMENDLDGCVADFQEALKLIEPHCAPDETGVDMTSDKDAYRTRGTMFRLEAALMGSLAVAYFKLDLLSGGGGALGFSVSSRFTFQMQRLLRKAVSKHPDQGELLLLHGELVAQGGDFLGALEKFAAAAQGSDEAEVGHVPTALPRGCPLPYVNAGRAYLQMNEPVLAERHLERAKEVDPFCAACHLDLGQLWVQRGDVVRALESFKFARSYSRTFPELHDAMACEQVALAHQQALDAIFGKM 590
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: A0A6S9M461_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M461_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 5.630e-20
Identity = 70/211 (33.18%), Postives = 102/211 (48.34%), Query Frame = 1 
Query:  133 RHGAVNSIGWLIAEYC*HVTLCLACPLFKAFECFATA-RSIDPLDA-DLYLHRGQGYLIANDFRMAEQDLKRSVELRATLP--------IAWAAWGVALFKLAVADGQPSPRLISKCLKVMEDALERFPKSCEVLLFFAEVLVSLGDFARALILLRESSLLEPDCPLPYVNAARAYLGMNDLVTARRHLERGQEVDPGYPGTFMDMGQLLM 735
            R G VNS+  +   YC          + +  E  A   R++   D+ D+YLHR Q YL+ N+ R+A  DL+R        P        +  A  G+A FK+ +  G P        L+ +E A    P + EVLLF+ E+L  +GDF +AL L R ++ + P CPLP+VNA RAYL +ND                     ++D+GQLL+
Sbjct:   36 RPGLVNSLLKVAGLYC---------DMDEKEEALAWFDRALGASDSPDIYLHRAQLYLMKNENRLAANDLRRCEARHEAGPGGEEGVPALVRATLGIACFKMDM--GSPLR------LRQIERAHRLHPDNVEVLLFYGEMLTQVGDFKKALALFRRAAEVSPRCPLPFVNAGRAYLSLNDHAAXXXXXXXXXXXXXXXXXAYLDLGQLLL 229
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: A0A8H7C0G2_9FUNG (TOM (Translocase of outer membrane) complex component n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7C0G2_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 3.400e-19
Identity = 65/231 (28.14%), Postives = 106/231 (45.89%), Query Frame = 1 
Query:  217 KAFECFATARSIDPLDADLYLHRGQGYLI-----------------ANDFRMAEQDLKRSVELRATLPIAWAAWGVALFKLAVADGQPSPRLISKCLKVMEDALERFPKSCEVLLFFAEVLVSLGDFARALILLRESSLLEPDCPLPYVNAARA-YLGMNDLVTARRHLERGQEVDPGYPGTFMDMGQLLMQEGRPAEALTTYAYGVERARFPSEIHDAISCLEVAKCHLE 855
              F+ F  A +I+P D D+Y HRGQG LI                 + ++  A +D   S++L  +   A    GV  +KL           IS  +    + L++FP S +V  ++ E+L        A+ +  ++  ++P  PLPY+N A   Y  M D+  A    +   E DP        + Q+L+++G+P EAL  Y   +E AR  +E+  AIS +E  K  ++
Sbjct:  357 STFKQFEEAIAINPSDPDIYYHRGQGVLITMKDAKSVLTKSLVNYISGNYDAAAKDYSESIKLDDSFVYAHIQLGVVQYKLGS---------ISSSMTTFNNTLKKFPNSADVHNYYGELLADQQKLPDAIDMFSKAVAMDPKNPLPYINKAMLMYQVMGDINEATALCKTALEADPACDAAVASLAQILLEQGKPEEALKYYELAIELARTEAELEHAISYVEATKTQIK 578
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: A0A0R3ST72_HYMDI (Uncharacterized protein n=3 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3ST72_HYMDI)

HSP 1 Score: 98.6 bits (244), Expect = 1.270e-18
Identity = 61/215 (28.37%), Postives = 109/215 (50.70%), Query Frame = 1 
Query:  232 FATARSIDPLDADLYLHRGQGYLIANDFRMAEQDLKRSVELRATLPIAWAAWGVALFKLAVADGQPSPRLISKCLKVMED---ALERFPKSCEVLLFFAEVLVSLGDFARALILLRESSLLEPDCPLPYVNAARAYLGMN-DLVTARRHLERGQEVDPGYPGTFMDMGQLLMQEGRPAEALTTYAYGVERARFPSEIHDAISCLEVAKCHLEAQR 864
            F  A+++DP+ AD+Y+HRGQ  L+  +   AE+D   ++ L+    +A A      ++ A  + +     +S+C K++ D     E+FP   E +  FA+VL  +G+F +A  L  +   L P   +PY      +L +  D V A + +E+G EVDP     +  +GQL M+ G+  +AL ++   ++ +   S+     +  E  K  L+A +
Sbjct:  450 FQQAQTLDPICADVYIHRGQTNLLTGNLAAAEKDFSEAIRLQPNCSVAHAQRLYMRYRKAALESR-----VSECEKIVNDFKLLQEKFPTCIETISIFAQVLTEMGEFEKADNLYAKLIELTPTSGMPYAQRGVLHLRLKQDPVEAEKLIEKGLEVDPRCEMAWELLGQLAMERGQHEKALESFQRALDESSIISDRQHLFALREGVKAQLQAAK 659
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: A0A1X2HMY4_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HMY4_SYNRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.480e-18
Identity = 66/224 (29.46%), Postives = 110/224 (49.11%), Query Frame = 1 
Query:  217 KAFECFATARSIDPLDADLYLHRGQGYLIANDFRMAEQDLKRSVELRATLPIAWAAWGVALFKLAVADGQPSPRLISKCLKVMEDALERFPKSCEVLLFFAEVLVSLGDFARALILLRESSLLEPDCPLPYVNAARA-YLGMNDLVTARRHLERGQEVDPGYPGTFMDMGQLLMQEGRPAEALTTYAYGVERARFPSEIHDAISCLEVAKCHLEAQRLLHGEVA 885
            + ++ F  A +++  D D+Y HRGQ   I  ++  A +D  +++EL  T   A    GV  +KL    GQ +  + +  LK     L +FP S +V  ++ E+L        A  +  ++  L+P  PLP +N A   Y  M ++  A R  ++  EVDP        + Q+L+++G+P EA+  Y   +  AR  SE+  AIS +E  K  +   +  H +VA
Sbjct:  340 ETYKQFEQAIALERDDPDIYYHRGQAEYIGGNYEAAARDYVKTIELNDTFVYAHIQLGVVQYKL----GQTATAMAT-FLKT----LAKFPDSSDVRNYYGELLADQQKIPEATAMFDKAIALDPHNPLPLINMAMLMYQAMANVDEALRLCKQALEVDPACDAAVASLAQILLEQGKPEEAIKYYEMAIGLARTQSELEHAISYVEATKSQIRFAKE-HPQVA 553
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: A0A6A5A476_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A476_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.820e-15
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 1 
Query:  220 AFECFATARSIDPLDADLYLHRGQGYLIANDFRMAEQDLKRSVELRATLPIAWAAWGVALFKLAVADGQPSPRLISKCLKVMEDALERFPKSCEVLLFFAEVLVSLGDFARALILLRESSLLEPDCPLPYVNAARAYL 633
            A ECF  A ++D    D+YLHRGQ  LI  D+  A   L+RS+    +L +   ++ +AL+K            + + + V + ALE+FP S EV LF+ +VL    D+  A+  L+++  L P CPLP++NA R ++
Sbjct:  212 ADECFTHAAAVDENSGDVYLHRGQMELIQGDYAAAVSSLRRSMTRCESLAVTHISYAMALYKAGS---------VYQSVDVFKSALEQFPTSHEVHLFYGDVLSDRADYGLAMEHLKKAVELSPACPLPWLNAGRIFV 340
[Close]
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Match: A0A7S2CEM9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEM9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.090e-13
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  574 SSLLEPDCPLPYVNAARAYLGMNDLVTARRHLERGQEVDPGYPGTFMDMGQLLMQEGRPAEALTTYAYGVERARFPSEIHDAISCLEVAKCHLEA 858
            ++ L   CPLPYVNA RAYL MN+ V A  HL    EVD       +D+GQL +Q G   +AL  +   +  +R   E+HDA++C  VA  H  A
Sbjct:   31 ATALPAGCPLPYVNAGRAYLQMNEPVLAELHLNHALEVDDSCAACHLDLGQLWLQRGDMEKALGHFECALSCSRSFPELHDALACRRVALAHQAA 125
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6207.13944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRZ0_ECTSI1.390e-5061.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUV6_9STRA1.980e-4136.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8H7QZ62_9FUNG2.710e-2030.24Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
A0A7S2WSB2_9STRA3.250e-2031.20Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A6S9M461_HETAK5.630e-2033.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8H7C0G2_9FUNG3.400e-1928.14TOM (Translocase of outer membrane) complex compon... [more]
A0A0R3ST72_HYMDI1.270e-1828.37Uncharacterized protein n=3 Tax=Hymenolepis diminu... [more]
A0A1X2HMY4_SYNRA4.480e-1829.46Uncharacterized protein n=1 Tax=Syncephalastrum ra... [more]
A0A6A5A476_9STRA5.820e-1535.51Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S2CEM9_9STRA1.090e-1342.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6207contigH-paniculata_contig6207:2505..6682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue2.6e-31
Seed eggNOG ortholog2880.D8LRZ0
Preferred nameTOMM70A
KEGG koko:K00738,ko:K17768
KEGG TC3.A.8.1
KEGG ReactionR05987
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00075
Hectar predicted targeting categorysignal peptide
GOsGO:0001101,GO:0001558,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010611,GO:0010614,GO:0010721,GO:0014070,GO:0014741,GO:0014743,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016202,GO:0017038,GO:0019867,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030308,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0040008,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0042887,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043502,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045595,GO:0045596,GO:0045843,GO:0045926,GO:0046620,GO:0046621,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051641,GO:0051649,GO:0055021,GO:0055022,GO:0055024,GO:0055026,GO:0055085,GO:0060284,GO:0060420,GO:0061024,GO:0061050,GO:0061052,GO:0061117,GO:0065002,GO:0065007,GO:0070201,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090087,GO:0090150,GO:0090151,GO:0090257,GO:0097066,GO:0097068,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1901698,GO:1901700,GO:1901861,GO:1901862,GO:1904386,GO:1904589,GO:1904591,GO:1904680,GO:1904951,GO:1905207,GO:1905208,GO:1990542,GO:2000026,GO:2000725,GO:2000726
EggNOG free text desc.protein transmembrane transport
EggNOG OGsKOG0547@1,KOG0547@2759
EC2.4.1.145
COG Functional cat.S
CAZyGT54
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000,ko03029
Exons6
Model size1173
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6207.13944.1prot_H-paniculata_contig6207.13944.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6207 3323..6400 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.9755578-UTR-H-paniculata_contig6207:2504..27881622930705.9755578-UTR-H-paniculata_contig6207:2504..2788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6207 2505..2788 +
1691481415.2875233-UTR-H-paniculata_contig6207:2504..27881691481415.2875233-UTR-H-paniculata_contig6207:2504..2788Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6207 2505..2788 +
1622930705.9903235-UTR-H-paniculata_contig6207:3288..33221622930705.9903235-UTR-H-paniculata_contig6207:3288..3322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6207 3289..3322 +
1691481415.2976737-UTR-H-paniculata_contig6207:3288..33221691481415.2976737-UTR-H-paniculata_contig6207:3288..3322Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6207 3289..3322 +
1622930706.0862682-UTR-H-paniculata_contig6207:6400..66821622930706.0862682-UTR-H-paniculata_contig6207:6400..6682Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6207 6401..6682 +
1691481415.3585105-UTR-H-paniculata_contig6207:6400..66821691481415.3585105-UTR-H-paniculata_contig6207:6400..6682Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6207 6401..6682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930706.0035028-CDS-H-paniculata_contig6207:3322..34301622930706.0035028-CDS-H-paniculata_contig6207:3322..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 3323..3430 +
1691481415.3074656-CDS-H-paniculata_contig6207:3322..34301691481415.3074656-CDS-H-paniculata_contig6207:3322..3430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 3323..3430 +
1622930706.0153644-CDS-H-paniculata_contig6207:3717..38131622930706.0153644-CDS-H-paniculata_contig6207:3717..3813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 3718..3813 +
1691481415.3150473-CDS-H-paniculata_contig6207:3717..38131691481415.3150473-CDS-H-paniculata_contig6207:3717..3813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 3718..3813 +
1622930706.0313225-CDS-H-paniculata_contig6207:3954..40941622930706.0313225-CDS-H-paniculata_contig6207:3954..4094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 3955..4094 +
1691481415.32273-CDS-H-paniculata_contig6207:3954..40941691481415.32273-CDS-H-paniculata_contig6207:3954..4094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 3955..4094 +
1622930706.0472884-CDS-H-paniculata_contig6207:4376..44811622930706.0472884-CDS-H-paniculata_contig6207:4376..4481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 4377..4481 +
1691481415.336469-CDS-H-paniculata_contig6207:4376..44811691481415.336469-CDS-H-paniculata_contig6207:4376..4481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 4377..4481 +
1622930706.0714314-CDS-H-paniculata_contig6207:6276..64001622930706.0714314-CDS-H-paniculata_contig6207:6276..6400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 6277..6400 +
1691481415.3478193-CDS-H-paniculata_contig6207:6276..64001691481415.3478193-CDS-H-paniculata_contig6207:6276..6400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6207 6277..6400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6207.13944.1

>prot_H-paniculata_contig6207.13944.1 ID=prot_H-paniculata_contig6207.13944.1|Name=mRNA_H-paniculata_contig6207.13944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=191bp
MAEQDLKRSVELRATLPIAWAAWGVALFKLAVADGQPSPRLISKCLKVME
DALERFPKSCEVLLFFAEVLVSLGDFARALILLRESSLLEPDCPLPYVNA
ARAYLGMNDLVTARRHLERGQEVDPGYPGTFMDMGQLLMQEGRPAEALTT
YAYGVERARFPSEIHDAISCLEVAKCHLEAQRLLHGEVAF*
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mRNA from alignment at H-paniculata_contig6207:2505..6682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6207.13944.1 ID=mRNA_H-paniculata_contig6207.13944.1|Name=mRNA_H-paniculata_contig6207.13944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4178bp|location=Sequence derived from alignment at H-paniculata_contig6207:2505..6682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAATCGTAAACCTCTGAGAGCTGCCATTAATCGATTAGGCTCCCGACG
ATGCGTGATATGTTGTTGCGTTGATGCGTTGGTGTGTTGGTGTGTTTGTT
ACGATGACAGGATGAACACGGTGATTTGATTACGCCATGGGGCAGTCAAT
TCTATTGGTTGGCTAATTGCTGAGTACTGCTAGCATGTTACCCTGTGTCT
TGCTTGTCCATTGTTCAAGGCTTTCGAGTGCTTCGCGACTGCTCGATCGA
TCGACCCACTCGATGCGGACCTCTACCTTCACAGGTAAGTCTATGCCCAC
GATGCTCTTGTGAACTCACGTATGAACCTTATCGAAGTAGCTCTCGCTGA
TTCAACCTTAGAAGTAGGTGGCGCGGCATTGTTGCCCAAACCTGCTGCGT
GAATAACCACACATTTGGTATTCTATATCGAATCCTGCTTACAGTACCTA
CATATTCACCTATCCGTGCGTCCTTTAGATACGGAATCGTGGACGTGAAC
TGCTGCCCCCGCTGGTCGTGGCATGCAATCTTTTACGTGCGTGTCGTTGG
TCTTTGGAACTTGACATCTTGCAAAGCTGCATATAACGATAGATTTTTAC
TTGGCCGTTGCAACTGCAGAGCAGGAAATGCACCCCTAGTTTGTAGCCGT
TAGAATCAGCTGCACACGCGATTTTTGCGGCCCTATGCCCTATTACGCTG
TTTGTCGGCGTATGGCGCTAGACTTGGTATTGAAGGTACATGTACACTAT
AAATATTTGCACTTATTTCATTTCGTGATCGCAGGGGGCAAGGTTATCTC
ATCGCAAACGATTTCCGGATGGCAGAACAAGATCTTAAACGCAGCGTGGA
GTTGCGTGCCACGTTACCGATTGCTTGGGCTGCTTGGGGCGTGGCGTTAT
TTAAATTAGCCGTGGCTGACGGGCAGGTGATGGGGTTGCAGCCGAAAATA
TTTATTCCAGTTTCTCAAAGATTCCGAACTTGGATGACATTGAGGCTACC
TGTAACGTGTGTAAGGACTGTTTAATTTTGTGCTCACGTATGCCACTACG
TTGTTCTATTTGACGGTTTGTTGGCTTCGTGCAAGACCGTCGTCATTTAT
CAATCGCAATATGACTGACAAGCCAATCATTGCGAGGTTCTTTGTATATA
TCTGCTGTGTTCGAGCCCTTGTTGTACCTCACATTTGTTTCTTTTCCCCT
CGTTGTCAAGCAGCCATCCCCTCGTCTGATATCCAAGTGCTTGAAGGTCA
TGGAGGATGCCTTGGAGCGTTTCCCTAAAAGCTGCGAAGTGCTTCTTTTC
TTTGCCGAGGTACGGTCGCATGATTTGTAACAATCAGACTGCACAAATGT
ACGTTCAGTGGCAGGTTGCTGTATTTTTGTTGAGACCTCCAACGGCAGTT
GCATGCAACGTCATGATCTCATTTATACCTTTTGTTTACATGCCTCCCAG
GTATTGGTCAGCCTTGGCGATTTTGCGCGGGCCTTGATACTACTAAGAGA
GTCGTCGTTGCTCGAACCCGACTGTCCTCTTCCGTACGTGAATGCCGCAA
GGGCATACCTCGGAATGAACGACTTGGTGACCGCTCGAAGGTGACAAGTA
ATTGAAGTACTCGCCTCGCGGTATTTTGATGATTTTATTTGAATAACGCT
TCGACAACCAAAGTGACGACGGAAGCGCTGCGTATCGTTCGCTTGCCCAG
AGTTTAACCCAATTTATAGGCCTGATGTCGTCTGTTATGTTTTCGCCCTT
TGTTAAATTGGTGACTTGAATGCTGCGTGATCCTTTGTACACACGTCTAA
CACGTTCCAGTAGCTAGTTGCTCAACGCTCATGGCTATTTTCCGGGTACC
CATCCCTCATCACTCGTTGCAGGCACTTGGAACGAGGCCAGGAAGTGGAC
CCAGGGTATCCCGGGACATTCATGGACATGGGCCAACTCTTGATGCAGGA
AGGTCGTCCTGCCGAAGCTCTTACTACGTGAGGAGCATGAAATACAGCAA
TATTTAACTGGCGCAGTAGGATAGCATGGTTGTTGCATGTATTAACAGTC
ATTTCGCGCCCATTACGATTGATAACAAGAAGAAATCAAGCAGTAGCGCC
CAAAAAAAAACAAGGTAATGTGTTAATGTTTATTTACATATGCACAACGA
TTGTGCTGTCTGCTTGACACCAGTTAATTTACTCCACAAATCACGAATTA
TTGTATTTTCAGACAAAAACAGTAGTGATGCAGCACGCACATGTAATTGA
AGCATAAGTTCACCTTCCCTGTCGAGGCGAGGCGAATTGGAATTTAATTT
TTTTCAGTTCGACTTGCTACTGCTACTGCTACTGCTACTGCTACTGGCCA
ATGTGCGAGATACTAGTATTTCGATTCTGTCCGCGTTTTTATATATTGCC
CATCGCAAACCTCTGTCATATATAGTACGCATTATGCTCCATTAGACATG
GCGTGTTTACTGTACTGTACTGTACTGTACTATTTATTGTCAACTCGGCG
GACTCTGGGGAAGGGGTCACATGTCGGGCCTCCGGTACGAGACAAATTTA
GTCCGGGCGGTATTGGATTTTTTTTTCATGCAGGTGGTGACTGCACGTTG
TCGGCAAGCTAATTTTGGGTATGTAGCCGACATTGCCTGCCCAACAAGAC
GCTACTCGTGTGAAAACTTCACCGTGTAAAATATGCATCTCGCCCAACAT
TCAGGTTGAGGAGCGGGGGTAGATGTCACGGAAAACAACATTTACGGGAC
CCCTCGGCATTATTGAAGAAGAAAAACATGGGTGTTGGAGAATGAGCGGG
ATTATAACCTCGACCCGTTTTGCGCCGGGCCCGATCTAATCCCTACTTTA
ATCCCCAACACCTCAGATAGGAAATAGGAAGAAACGACCCCTGCGCCATG
GTTACGGATATAGAAAGCCGTCGCTGTTCAGACAGACAGTCCAGACAAAA
ATACACATAGCATAGACGATAGTTGCTGTGGTCTTTTCTACCCACAACGG
CTGCTGGCGGCGCTCAAAATTTGTTGTCAGATGATGTTTTTTTGTTCCGA
AACAATCTCCGACGCCAGAAGGTTAAAGGGTGGAGAGAATGGCCTAAGAG
AGAGATTCTCCCGAGGGGAGGAGGGCGTGCTCATGTTTGGTATGCCGTAG
TTGTTAAGACGATTGCCGACGCATCTGCGGGAGGACGGAGCTTCGTATTC
GACGGGGGGGTATCGAATAAGCCAGAACGAGAATGCCTCGAACGACATCA
AATCAACAAAAAGAGAATAACCGCCCCAGAGTTGTTGGAACACTCCGGAG
GAGTCAAGTTTTCGCAAAAAATTCAATGCGCCCGGGGCAATTGGATTTTC
GCAAAAGAGTGGCCGGTCGTAGAGGTACACGGTGCGGGTATGTGACGAGT
ATCAAGCGGGCTTGCTTCGTACATTCTGTTGAGGCCGGACATCGTTCATT
TTCTGGGCACTGCCAACGTGGTCCTGTCTACTGTACACAGTGTCGGCGGG
TAACTGTTTGCACGATAGCCCCGGTGTTACCCCCCCCCCCCCCCAAATGA
ATAATTTATCTTGTTGTTCTGCCGCCGTGGTCGCGCAGAAAATGTTCCAG
AGTATTTTCTTAATTGTGAAAATATTTTAGTTGCCCCACAGGGCGTTCTC
TCCGCTCTTTTCGATATATTTTCGGTAGATTGATGGTACTGAGGAGCCGA
AACGAACACTCACAAGGGGACGCGCTATACTACAAAGGCATCACTCTTTT
TTTGTTTCGCGGTCGACGACAGGTATGCATATGGAGTAGAGAGAGCCCGC
TTCCCGTCAGAGATTCACGATGCTATATCATGCTTGGAGGTGGCGAAGTG
CCACCTGGAGGCACAGCGACTTCTACACGGGGAGGTCGCATTTTGATTGT
TGGTCTTACTGGGATGGTTAGTGCTACCCGTCAGCGACCCCCGCTTGATG
CGTGCTGTGTTAAATCGATTTCTCGACTCGCCGTGTGGCAGCTTTACTCT
GTAATGGCGCACCTACTATGGCTGAGCTGCTTAAATGTAATCGCCTGGCA
ATGTACACATGGTGCACCCCTACACGTGGGTTTCCAAGTCGTCGTTGAGG
ATAAAAAATGAGGAATTCGTGGTATTTACACATGTGTACTTGGATGCCGT
AAAACCTTCAACCTTTGGTGAATACACC
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Coding sequence (CDS) from alignment at H-paniculata_contig6207:2505..6682+

>mRNA_H-paniculata_contig6207.13944.1 ID=mRNA_H-paniculata_contig6207.13944.1|Name=mRNA_H-paniculata_contig6207.13944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at H-paniculata_contig6207:2505..6682+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGAACAAGATCTTAAACGCAGCGTGGAGTTGCGTGCCACGTTACC
GATTGCTTGGGCTGCTTGGGGCGTGGCGTTATTTAAATTAGCCGTGGCTG
ACGGGCAGATGGCAGAACAAGATCTTAAACGCAGCGTGGAGTTGCGTGCC
ACGTTACCGATTGCTTGGGCTGCTTGGGGCGTGGCGTTATTTAAATTAGC
CGTGGCTGACGGGCAGCCATCCCCTCGTCTGATATCCAAGTGCTTGAAGG
TCATGGAGGATGCCTTGGAGCGTTTCCCTAAAAGCTGCGAAGTGCTTCTT
TTCTTTGCCGAGCCATCCCCTCGTCTGATATCCAAGTGCTTGAAGGTCAT
GGAGGATGCCTTGGAGCGTTTCCCTAAAAGCTGCGAAGTGCTTCTTTTCT
TTGCCGAGGTATTGGTCAGCCTTGGCGATTTTGCGCGGGCCTTGATACTA
CTAAGAGAGTCGTCGTTGCTCGAACCCGACTGTCCTCTTCCGTACGTGAA
TGCCGCAAGGGCATACCTCGGAATGAACGACTTGGTGACCGCTCGAAGGT
ATTGGTCAGCCTTGGCGATTTTGCGCGGGCCTTGATACTACTAAGAGAGT
CGTCGTTGCTCGAACCCGACTGTCCTCTTCCGTACGTGAATGCCGCAAGG
GCATACCTCGGAATGAACGACTTGGTGACCGCTCGAAGGCACTTGGAACG
AGGCCAGGAAGTGGACCCAGGGTATCCCGGGACATTCATGGACATGGGCC
AACTCTTGATGCAGGAAGGTCGTCCTGCCGAAGCTCTTACTACGCACTTG
GAACGAGGCCAGGAAGTGGACCCAGGGTATCCCGGGACATTCATGGACAT
GGGCCAACTCTTGATGCAGGAAGGTCGTCCTGCCGAAGCTCTTACTACGT
ATGCATATGGAGTAGAGAGAGCCCGCTTCCCGTCAGAGATTCACGATGCT
ATATCATGCTTGGAGGTGGCGAAGTGCCACCTGGAGGCACAGCGACTTCT
ACACGGGGAGGTCGCATTTTGAGTATGCATATGGAGTAGAGAGAGCCCGC
TTCCCGTCAGAGATTCACGATGCTATATCATGCTTGGAGGTGGCGAAGTG
CCACCTGGAGGCACAGCGACTTCTACACGGGGAGGTCGCATTTTGA
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