mRNA_H-paniculata_contig62069.13943.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62069.13943.1
Unique NamemRNA_H-paniculata_contig62069.13943.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig62069.13943.1 vs. uniprot
Match: A0A6H5JJI8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.530e-7
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:  332 GHDNTGTFTVVSDS-EGKKPLRGQFIFSYKTNDMGNVVKFKERLVADGRTQIQDIDY 499
            GH  TGTF+ V  + EG++P+  ++ FS+KTN  GN+ KFK RLVA G +QI ++DY
Sbjct:  331 GHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNQEGNIDKFKARLVATGFSQIPNVDY 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62069.13943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJI8_9PHAE2.530e-750.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62069contigH-paniculata_contig62069:235..735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size502
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.9174428-CDS-H-paniculata_contig62069:234..5731622930705.9174428-CDS-H-paniculata_contig62069:234..573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62069 235..573 +
1691481415.2701306-CDS-H-paniculata_contig62069:234..5731691481415.2701306-CDS-H-paniculata_contig62069:234..573Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62069 235..573 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.9315658-UTR-H-paniculata_contig62069:573..7351622930705.9315658-UTR-H-paniculata_contig62069:573..735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62069 574..735 +
1691481415.2787883-UTR-H-paniculata_contig62069:573..7351691481415.2787883-UTR-H-paniculata_contig62069:573..735Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62069 574..735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62069.13943.1prot_H-paniculata_contig62069.13943.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62069 235..573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62069.13943.1

>prot_H-paniculata_contig62069.13943.1 ID=prot_H-paniculata_contig62069.13943.1|Name=mRNA_H-paniculata_contig62069.13943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
SPPALADTEARRLEAYNLPAPDPIRQGRTRGEQRRIQEEEARALLAHDAG
PELEFRMSDIMEDEAAFMVTGELSFEPFSLNDAEPLPRNIDDVRRSKYRP
FGRRRFKGNGGS*
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mRNA from alignment at H-paniculata_contig62069:235..735+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62069.13943.1 ID=mRNA_H-paniculata_contig62069.13943.1|Name=mRNA_H-paniculata_contig62069.13943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at H-paniculata_contig62069:235..735+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCTCCCGCCCTTGCGGATACGGAGGCGCGCCGCCTTGAAGCGTATAA
CTTACCGGCGCCCGACCCGATCCGGCAGGGGAGGACTAGAGGAGAACAGC
GGAGGATACAGGAAGAGGAGGCGCGAGCTTTGCTTGCTCATGATGCTGGA
CCCGAGTTGGAGTTCAGGATGTCCGATATCATGGAGGACGAGGCTGCTTT
TATGGTGACAGGGGAGTTGAGTTTTGAACCTTTTTCGTTGAATGATGCGG
AACCTTTACCTCGAAACATAGACGATGTGCGACGATCAAAATACCGTCCG
TTTGGGAGGAGGCGATTCAAAGGGAATGGGGGGTCATGATAACACGGGAA
CGTTTACCGTAGTAAGTGACAGTGAAGGAAAGAAACCGTTGAGGGGACAG
TTCATTTTTTCGTATAAAACTAACGACATGGGAAATGTGGTAAAGTTCAA
GGAAAGACTGGTAGCTGATGGAAGGACACAAATCCAAGACATAGACTACG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig62069:235..735+

>mRNA_H-paniculata_contig62069.13943.1 ID=mRNA_H-paniculata_contig62069.13943.1|Name=mRNA_H-paniculata_contig62069.13943.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig62069:235..735+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCTCCCGCCCTTGCGGATACGGAGGCGCGCCGCCTTGAAGCGTATAA
CTTACCGGCGCCCGACCCGATCCGGCAGGGGAGGACTAGAGGAGAACAGC
GGAGGATACAGGAAGAGGAGGCGCGAGCTTTGCTTGCTCATGATGCTGGA
CCCGAGTTGGAGTTCAGGATGTCCGATATCATGGAGGACGAGGCTGCTTT
TATGGTGACAGGGGAGTTGAGTTTTGAACCTTTTTCGTTGAATGATGCGG
AACCTTTACCTCGAAACATAGACGATGTGCGACGATCAAAATACCGTCCG
TTTGGGAGGAGGCGATTCAAAGGGAATGGGGGGTCATGATCCCCTCCCGC
CCTTGCGGATACGGAGGCGCGCCGCCTTGAAGCGTATAACTTACCGGCGC
CCGACCCGATCCGGCAGGGGAGGACTAGAGGAGAACAGCGGAGGATACAG
GAAGAGGAGGCGCGAGCTTTGCTTGCTCATGATGCTGGACCCGAGTTGGA
GTTCAGGATGTCCGATATCATGGAGGACGAGGCTGCTTTTATGGTGACAG
GGGAGTTGAGTTTTGAACCTTTTTCGTTGAATGATGCGGAACCTTTACCT
CGAAACATAGACGATGTGCGACGATCAAAATACCGTCCGTTTGGGAGGAG
GCGATTCAAAGGGAATGGGGGGTCATGA
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