mRNA_H-paniculata_contig6206.13942.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6206.13942.1
Unique NamemRNA_H-paniculata_contig6206.13942.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6206.13942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6206contigH-paniculata_contig6206:5448..12032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size178
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.8580508-CDS-H-paniculata_contig6206:5447..55511622930705.8580508-CDS-H-paniculata_contig6206:5447..5551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6206 5448..5551 +
1691481415.244888-CDS-H-paniculata_contig6206:5447..55511691481415.244888-CDS-H-paniculata_contig6206:5447..5551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6206 5448..5551 +
1622930705.8712587-CDS-H-paniculata_contig6206:11958..120311622930705.8712587-CDS-H-paniculata_contig6206:11958..12031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6206 11959..12031 +
1691481415.254464-CDS-H-paniculata_contig6206:11958..120311691481415.254464-CDS-H-paniculata_contig6206:11958..12031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6206 11959..12031 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6206.13942.1prot_H-paniculata_contig6206.13942.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6206 5448..12031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6206.13942.1

>prot_H-paniculata_contig6206.13942.1 ID=prot_H-paniculata_contig6206.13942.1|Name=mRNA_H-paniculata_contig6206.13942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
LCGVIQRSYVSEVRKLTRGLLRELTNLPRLTRVPQERYHRRLGRRHFRGA
QKRALCSKR
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mRNA from alignment at H-paniculata_contig6206:5448..12032+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6206.13942.1 ID=mRNA_H-paniculata_contig6206.13942.1|Name=mRNA_H-paniculata_contig6206.13942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6585bp|location=Sequence derived from alignment at H-paniculata_contig6206:5448..12032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGTGGTGTTATCCAACGGTCTTACGTCTCTGAGGTTAGGAAACTAAC
ACGAGGGCTCCTCAGAGAACTAACAAACCTCCCGCGATTGACGCGGGTTC
CACAGCCCCACGGGCATAAAAATCTGTGAAACACGATTGCTGTTCCTCAT
TCATAACCATTCCTTCCGCTCCGAATCCAGATCTCACGCCCGCCAACATC
CCACCGCCGGGCCGGCAGTTGTAGATCTTACGGCTCTGGCGGCGTGTGTC
CGGCAGCCAGGGGAGGTTGGCATCTGTGACTAGCTTGCAATGGGGTCTGC
TGAAACTGGGACAAAGGTATGGTTGAGACAGTCACCCTAATAGGGTCAAC
ACGCTTAACCGCGATACTCCCTTGTGCCATCGTGGCTACCTTAGCAACAC
TAGATGCCACAACAGCAAGACCCAGCACTCGGCATACTTCGCCAACGTCT
CCTTCAGATCACCTTCCTCCAGTTCAGAACCATCAAAATGCCTGCGCGAA
AGGCATGATGTAACAAACCGTGGCAACAGCTCAGATACAGTAAGACAACA
CCGCTGTAGGGACTGAGCACGATTGCTCAACTAGAAATTTCGCTCATATT
CTTGATGATAAAGAAGCCCTTCGAATCCTCCTGTGAATACGTTATAACAT
AGTTAGAGGCTTGGTAGCCTGAACTCATTACAAGTTGGACCAAGTCCCTC
TCGACACTCACTTCATCTGCAGCAGAAGCTACTGTTGCCGTTGTATCACG
ACATCACTGCTGCCCTCCTCCAGCACGCATTTAGCAGTACCCTTCATCGA
GGCCCAGTCAATGGTTTGTTCCTTCCGTCACTTGATCTTTGCAGCCACGA
TCCAAAACTTGCAGTTCACAGGTTCAGCAGCATTGATCAAACGTGCTGGC
CTAGTCATTGATAACTGAGTTTGGAAACATTTTTGTATTGGCTCGCATTT
TCAGGGATAACAAACGTTCCGTCCGTTTTCAAGAACAAACAGTCCACCAG
TCGCTCAGCGTTCTCCTAACGCTGCGGCCTGTTTGTTTGTTCCGCCCACT
ACCTTAGATTCAGTGGACCCGGTTCGAAATTAACCCTTTTACCGCACCTG
GCGCTTTGGACTTCCGCAACTGCTGGTCAGCTTACCACCAGTCGTATTCA
ACCTTCAGTTAATGTGTACTTCAGCACACCCAACTGGCTGTCCAAACTAG
CACCTTCGTTCGACAGAACAGGTTTAGACGGCATCGATTACAGCGCTGTC
ATACATAGCGCACCAGTCAATGCCTCGGGGACTCATACCCGCGAAAAATC
GCCAGGCCGGAGAGTTTCGGCTTCTTGTTTCTGCACGAAGCTTTGCATTA
TCACACGCAGTGCTCCTGGTTGTTCTTCCAAATTCTTTTAAACTTCAACT
TCACTCATCAGTCATTCTATACAATCAAATTCGCAAGCAAAATAATGTCG
AAGCCCTCAAGATATTGTCAAGATATTTTCAGCTGCCTAAACACTCATTT
TCACAGAGGGATTTGGCCCAACTTGTAATGGGTTCAGGCTACCAAGCCCT
AACTATGGTATGAGGATTCGCAGGAGGATTTCTGCCCGTGGGGCTCGCGA
CATGGGTTCACTGGTGGAGCCCTGCAGCCACACGCATTCGTGCCGCCGCT
GCCTTCGCATCTCTAGACACTTCGCCATGGACCATATGCCTTTCCAAGAG
AGCAGTGTCCGGAATCGTAATGACCTGCCCTGTCCTGATTAAAAAGGCAA
CAAGATTCCAGGAAACGTTCTCAAGGTTCTGGCCGAAATTAGAAACCGCA
AAAAGCAATGAAGCAAAGATTAGCGGTGGGGAGTCCGAGAGCAGCGATGA
CAAATTTCGCTTATTATCTCTCGATAGCTGCTTGGGAGTCATCCTACGGT
AGGGGGGGTCAAAAAAGCGGTGCAAAAGTAACGCGAATCAAAACCATGTC
AACTCCATGTGTTTGTCCATCCCTGAAGATGTAGAGTCCACTAGTTGAAA
TCGGATTTTTGTTTACAGGAGGGCAAAAAATGCATAAAAATGAAAGGTCC
GGTCCTCTCCTCAGAGCGGCTCCTTCAGTAATCCTACTGAACGAGCATGA
GGAGGGTCTCCAGTATCAGTTGCACAATGGCGTTGGGGCCAAGAGTCGGG
TTGTTTGAACGGTCTATTCTTGTATTGACTAGTTTCTCGTGGCATACCCT
CCTAGCCTCTTTTGTGTGGCTGTTATACTTGATTCCCTAGGGCATCCTAT
TTCTCTACGCTCTAGCTAAAAAGACGAATGAACCAGGAATCCGAGTCTGC
CTCGGGCCGCTGAGAAAGAGCACAGACCCGAATCCGCGTCGAGCCGCTGA
AAAAATCACACACCCAGGTCTACGTCGGGCCGCTGAAAGTCACGCACCCG
AACTACGTCGGGCCGCTGAAGATGAGGTACACTCGTGATCATCGACGGAC
AGGTCAACCTACTACTCTGTTTCAAGCACACTGTTCTATTACTGCTGCGT
AAAGCTCAACACACTCGATGCTACGAAGTATTGACTACATAGGCACACTT
ATCTATTTCTTGACAGTAGTCTGAACATTGCATCGTTCCAAGATACATGC
TAACCCTAGCTGGGGAAATAAAGAGATTACTTTTCTGCTAGGTGGACCAT
AATCACGACTCGACGAGCCGATATTTTGGTGGCGGGGGGGAGGGGGAGGA
ACCGCTGACCCGGGGTCGGCGGGGGAAGTGAACACAATGACGGAGAAACA
AGGGGTTTGTTCGGTGGAGGTGAAAGGAAGCGCGGGCCCGGCATCGGCGG
CCTGTGGGCGGTAGATCGGGAGTATAACAGAGTGGGGCACGGGGGGGTGG
CAAGTGCGAGCCGACCGCAAGAGAATCAATCAGAAGGGTTGGGGTCTGGA
TGTGGGGGACCAGTACGATGCCTGGACAGTCAGGGGTCGCAACAGGGGGG
AGTGCCAGATCAAGCGTAACAAAAAGTAGGCGAGGTACAAACAGCGGCGT
CGCCCACGACGTTGCTGCCGGCGGTTGGACGCGGGCGGCACACGACTATT
CCGGTATGGAGGGCGCGGCAGATGGGCGACCAGACACAGCAGGTAGGCGC
GCTTGACCAAGCATAACATATGCTTGGAATAGGAAGGGGAATGGACGGTG
TGACTCCAGTATATGCAACGAGACCAAAACCGTCGCATACGCATTCGGGG
ACTGATGGTGGAGTTCGCGGCGGAGCGCTCGGGCGCGGGCGGCACACTAC
GATACCGGCATGGATGACCGCGCAGACTGGGGGCTACACGCAGCGGGTGG
GGGGTGCCTACTCAACAACTGTGGCGTATGTTTGGGGGTTTGGGATCGCC
CAGTCGCGAGCTTGGATGGATGCGGCCATGGCCTGCACATTGGGTCGGCG
CTAGCAAGGACCCGGTGCATTACCAACGGCGGCGGAGGCGGCGGGGGACG
GAGACACTGGCGGTGGTGACGATGGCGAAGGCAAGGGGTCAGGCGACCGC
AGCAGCGGCAGTGGAGGGGACAGAGAAAGCGGTACAGGACAGGACGGCGT
CCACAGTTCGAGCAGTCGAGGTTCGGTGAGCAGCCCGGCGTGGTGGGGCG
GCAGTTGAGGGAGGGCTGGAGGCCCCACGGTCGAGAAAACGGGAGGGAGG
GGCGTAGGAGGACGCCTTCGAAAGACCTCGCTGACGGCGCGGGCAGTTAG
AGAGGGAAGAGCGGCAGGAGGCCAAGACAGACGCGGACGAAGGCATGGTA
CTGGAAACGGCCGTGGCAGTGAACTCCCGAAGCTGGCCTTTCGAGGAGCT
CGCTGCGCCTGTTGCTCGACGGAGGTGATGCGCGGGGTACGGGCTATGAG
ACTGCCATGCACTCACGTCCTACACACTGTGTGCGCCATTGACATACTAG
AACGCTCCCGGGTGCCGGGTCCGCTTTGCTGCCCGTACCCAGGGTGCGGG
GCGAGGCATGACCATCAACCGCCGCTGGAGTACGTCGTGCAAGAAGACCC
AACAAGCCGCGAGAGGATAGAGGCACTATATGGGGTGTGCGCCGGCGATA
GCCACGGAGCCAGGCCGGGACGCTTTTTCTCCTTGAACCAGAATAGTCTA
GGTATGGCGGGACCTCTGGATCGCTACACGGTCGCCGACTTTTGACAACG
ATACGACACGGTCGTCCAGGTGAAGCACGGTCTTCAACGCCACCTAGCAC
AATTCTTTCTGTACTGCACGGACCTCCTGAACCACGAAATGAGCCGGCAC
CAGACGCCGGGAGCGGAGACGCCACCATCCCTTCTGCGGGCATTGAAACT
CAACAACAAACTCAGCGCTGTTTCTATCATGTTCTTGGTCTTCTTTTCCT
ATACTATGGAAAACATTGTTTTATGTGGGCTTCTAAGCTCTTTTATCAGT
TGTCTTGGTGTTAGCTGATATTAAAAATTAAAAGAATTGTTGCTTTTAGC
GAGATTGGGCATGTTGGTTTTATGTGTTGAAGGTTTACAGTGTATGTTTC
TTTTACCTTTTAATTTGTATAGTAACTGCTTTTTTTTAATGTCGAATTTG
TTTTGTGTCTTAACTTGAAAAAAACAAAAATGGTTACCGACGGACAATTC
TCCACGAGGATCAGGTTCCTCCCAGTGAAGAGAGGGAACATTACCGTCGT
GCTCCCGTGGCTCTTGGCGTACACAGAGGCTCCGGCAGCCCGCGGCTGGT
CGACGGCGTGGAGCACGTCTACGGTGGACCGACACAGGAAGGCGGTACCT
GCGTGCAGGCACAAAGATAGGAACTCTAACGCGGCGAGAGCGTTGTTGTC
GGATAAATTCGCGCCTGCCAACGAGGATACCTTCGGCAAAGTCAGCGCGA
AATTCGGCCGGGAGGATGCCTCCGCGCTGGCAGCGGAGAAAGCAGTGGCC
ATAGCAAGCCTGAAGGCCAGACGACGAGTATAACCCCGAAACGCTGATAG
CGGTTGTGAAGTCGAAAAACACCCTGTCCGCGGCGGGTAACGATGGCCTG
CGTTTCTCCCATCTGCAGTGCATCCTGAACACCTCGGCGCGTAAGGAAGT
TTTTGGCTCAGTTGTTGGGTCTTTCTGTCGGCCCTCCATGGAACAACCCG
ACGCCTTCCCCCCGGAGCTCTGGGAGTTATTCTCCAAAGCAACCTCACGG
CACTCAGAGAGAAGTGCCGCCCAATCTGTGTGGGATCTACAATGAGGCGT
ACTTTGGCCGCTGGGGTGGTCAAGCAGTACAGGTCGAAACTGGAGAAGGT
TAACTTATCGGAGCGGCAATACGGGATAGCGGCTTCGGGTGGCGCGGAGC
TCATGGGCCTCGGCGCGAAAGCACACCACTGATTGGGGCATTGGCTCATC
GCCTTTGACTGTACCTATGCATTCAACTTCATCAAGCAGGCAGTGATCAT
GGAAGAAGTGTCAATCCGCACCCCAGGATTGACACCTTTCGTAGCCAAAT
GCTATGGGGAGAAGCCGGCAGATATCATTTTCCAGAAGGACACCAGTGAA
CGCAGGAAAATTCTTCTCGAACACGGAAATCCACCAGGATGACGGACTGG
GACCCGCCCTCTTCTTCATGCCCTTTGGACCGATCTTGCGCAAGGGCCGA
GAACAATTCGAGGCTCTGGGGGTGGAGTTGTTGGCCTACCTGGACGATCT
GGTGCTGGCAATGGGGGAGCTGATGGACGAGAACTTACCGGCGATCCACT
TCCTCGTACACCAGCTAGCACATATATGAGTGCAGATTAACAACGCCAAG
GCGAAGGCGATGCCCCCAATGAACCACATCCCCACCGAAAGGGAGATCGC
TGCGTTGGCGGCGATGGACATCAGCGTCGCAGAGGGAGGGGGGGCTGTGG
TGGTGGGTACACCGATTGGGACAGACGTATTCATTCACCAGCACGCCGTC
ACAGTAGTCAAGGAAAAGGGGGCAGAGCACCTTGCGCGCCTAATAACGCA
TATGCCCGACAAACAAGCGGCGATGCTGATCACCACACAGTCCAGGGCCC
TGAAGACCTGCTTTCTGGAAAGAGTGATGGACGCCGAACTCTCCGACCAA
GACTGCACACTAACCGACAATGGCGGACTATGGATGTTGGAGAACTTTCT
CGACGCCGGCTGCCCGGCGAACCACTTCAACCTCCTGCCCCACCAGCGAC
TCCAGGCCGCCATGTCGACCGGTTCAGGGGGCTTGGGACTCACTTGGGTA
TGGAGCAGGCGCTGGTCAGTAACGATGGGAAGTATGTAGAGCATGCTGCT
ACAGATAATTGGGGACTCGTCAGGACTGTTAGGGGAGCGGGTGCGGTCAC
ACCTCCCCGAGACCCCTATGGTTCGCTCACTGGAGGCAACTCTCCGGGTT
TGGCAGAGCAGTAAGCTGCGGTGCTGCTGCCCGGGACTACCGGGTGGACA
TTATCGTCCAGCAGAAAATCTCCGATACTCTTATCAACGCCTACAGCGTC
AAGGGTCTCCTGATCGACGTCACGCAAACATATTCGAAGTCAGCAAAGCA
CTTCGAGCTAGGGAGCGCTACCATCGACGGCTCGGCCGCCGCCACTTCCG
AGGCGCGCAAAAGCGCGCACTATGCTCGAAGAGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6206:5448..12032+

>mRNA_H-paniculata_contig6206.13942.1 ID=mRNA_H-paniculata_contig6206.13942.1|Name=mRNA_H-paniculata_contig6206.13942.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig6206:5448..12032+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTGTGGTGTTATCCAACGGTCTTACGTCTCTGAGGTTAGGAAACTAAC
ACGAGGGCTCCTCAGAGAACTAACAAACCTCCCGCGATTGACGCGGGTTC
CACACTGTGTGGTGTTATCCAACGGTCTTACGTCTCTGAGGTTAGGAAAC
TAACACGAGGGCTCCTCAGAGAACTAACAAACCTCCCGCGATTGACGCGG
GTTCCACAGGAGCGCTACCATCGACGGCTCGGCCGCCGCCACTTCCGAGG
CGCGCAAAAGCGCGCACTATGCTCGAAGAGGGGAGCGCTACCATCGACGG
CTCGGCCGCCGCCACTTCCGAGGCGCGCAAAAGCGCGCACTATGCTCGAA
GAGG
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