mRNA_H-paniculata_contig6205.13941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6205.13941.1
Unique NamemRNA_H-paniculata_contig6205.13941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: A0A6H5JFZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFZ3_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.720e-22
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGCELRGHSLLQGCRLPQSR 201
            M+ SLRSLV YYL+  M+ NA FL ERLVA +PREENVLLLATCH+    +L  H+LLQGCRLP+SR
Sbjct:   16 MEDSLRSLVQYYLENLMHANATFLGERLVACNPREENVLLLATCHLMNKSKLTAHALLQGCRLPESR 82
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: D7FXT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 6.760e-21
Identity = 46/67 (68.66%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGCELRGHSLLQGCRLPQSR 201
            M+ SLRSLV YYL+  M+ NA FL ERLVA +PREENVLLLATCHV    +L  H+LLQGCRLP+SR
Sbjct:   16 MEDSLRSLVQYYLENLMHANATFLGERLVACNPREENVLLLATCHVMNKSKLTAHALLQGCRLPESR 82
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: A0A835YV22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV22_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.160e-13
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGC--ELRGHSLLQGCRLPQSR 201
            M+A LR+LV +YLD+++  NA FLCERL+A+ P E+N  LLATCH R+G   + R H LLQG R    R
Sbjct:    1 MEAQLRALVCHYLDSYLLENATFLCERLLAAHPGEDNAFLLATCHARQGDSGKRRAHVLLQGTRSEPCR 69
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: H3HBQ8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HBQ8_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 2.980e-12
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGCELRGHSLLQGCRLPQSR 201
            M+  L + V  YLD ++Y NA FL ERLVA  P EENVLLLATC+ R G   R  ++L G   P +R
Sbjct:    1 METELAAQVQRYLDAYVYENARFLAERLVAQRPSEENVLLLATCYYRNGQAARASAVLSGATRPDNR 67
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: A0A6A3KJ40_9STRA (Cell division cycle protein 27 n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KJ40_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.110e-10
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGCELRGHSLLQGCRLPQ 195
            M+ +L + V  YLD ++Y NA FL ERLVA  P EEN LLLATC+ R G   R  ++L GC  P+
Sbjct:    1 MEEALATQVQRYLDGYVYENARFLAERLVAHHPSEENALLLATCYYRNGQAARASAVLIGCSRPE 65
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: A0A225WX97_9STRA (Anaphase-promoting complex subunit n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WX97_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.060e-10
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGCELRGHSLLQGCRLPQ 195
            M+ +L S V  YLD ++Y NA FL ERLVA  P EEN LLLATC+ R G   R  ++L+G   P+
Sbjct:    1 METALVSQVQRYLDVYVYDNARFLAERLVAHHPSEENALLLATCYYRNGQATRAAAVLRGATRPE 65
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: A0A484DSP3_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSP3_BRELC)

HSP 1 Score: 63.5 bits (153), Expect = 3.850e-10
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGCELRGHSLLQGCR 186
            M+A+L S V  YLD F+Y NA+FL ERLVA  P EEN LLLATC+ R G   +  ++L G +
Sbjct:    1 MEAALVSQVQRYLDIFVYNNALFLAERLVAHHPSEENALLLATCYYRTGKIAQAAAILSGAK 62
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: A0A061R3K8_9CHLO (Anaphase-promoting complex subunit 3 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R3K8_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 9.850e-10
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGCELRGHSLLQGCRLPQS 198
            M+A L S + Y L+  +Y NA+FLCERLVA  P+EEN LLLATC+       R + LL+    PQS
Sbjct:    1 MEAQLVSAIQYSLNLHLYQNALFLCERLVAGFPKEENFLLLATCYYHSKQIHRAYHLLKNSANPQS 66
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: A0A0N7L7V2_PLAHL (DNA-binding cell division cycle control protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7V2_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 1.350e-9
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGCELRGHSLLQGCRLPQSR 201
            ++ +L   +  YLDTF+Y NA FL ERLVA +P EEN+LLLATC+ R+G   +  ++L G     +R
Sbjct:    5 VEVALIKQIQRYLDTFVYDNARFLAERLVAHNPNEENLLLLATCYFRKGQAAQAAAVLNGATSADNR 71
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BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Match: A0A662X768_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X768_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGCELRGHSLLQGCRLP 192
            ++A+L + V++YL+ ++Y NA FL ERLVA  P EENV LLATC+ R G   R  ++L G + P
Sbjct:   77 LEATLVAQVHHYLEVYVYDNARFLAERLVAHHPTEENVHLLATCYYRSGQVPRAIAVLSGAKRP 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6205.13941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFZ3_9PHAE4.720e-2267.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXT1_ECTSI6.760e-2168.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV22_9STRA2.160e-1353.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H3HBQ8_PHYRM2.980e-1250.75Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3KJ40_9STRA1.110e-1050.77Cell division cycle protein 27 n=5 Tax=Phytophthor... [more]
A0A225WX97_9STRA2.060e-1050.77Anaphase-promoting complex subunit n=1 Tax=Phytoph... [more]
A0A484DSP3_BRELC3.850e-1053.23Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A061R3K8_9CHLO9.850e-1050.00Anaphase-promoting complex subunit 3 n=1 Tax=Tetra... [more]
A0A0N7L7V2_PLAHL1.350e-946.27DNA-binding cell division cycle control protein n=... [more]
A0A662X768_9STRA1.360e-948.44Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6205contigH-paniculata_contig6205:6903..7106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.9e-17
Seed eggNOG ortholog2880.D7FXT1
Preferred nameCDC27
KEGG koko:K03350
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0000375,GO:0000377,GO:0000398,GO:0000819,GO:0001775,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007091,GO:0007275,GO:0007338,GO:0007343,GO:0007346,GO:0007389,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009504,GO:0009566,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009888,GO:0009896,GO:0009933,GO:0009948,GO:0009949,GO:0009952,GO:0009987,GO:0010014,GO:0010015,GO:0010033,GO:0010071,GO:0010154,GO:0010467,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016192,GO:0016567,GO:0016740,GO:0017156,GO:0019538,GO:0019787,GO:0019899,GO:0019902,GO:0019903,GO:0019941,GO:0019953,GO:0022402,GO:0022414,GO:0022622,GO:0030071,GO:0030154,GO:0030163,GO:0031145,GO:0031331,GO:0031461,GO:0031974,GO:0031981,GO:0032270,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034641,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043900,GO:0043901,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044784,GO:0045055,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0046483,GO:0046903,GO:0048285,GO:0048316,GO:0048364,GO:0048507,GO:0048508,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048532,GO:0048608,GO:0048731,GO:0048829,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051276,GO:0051301,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060467,GO:0060468,GO:0060471,GO:0061458,GO:0061630,GO:0061659,GO:0062033,GO:0065001,GO:0065007,GO:0070013,GO:0070647,GO:0070979,GO:0071704,GO:0071840,GO:0071849,GO:0071850,GO:0071851,GO:0080154,GO:0090068,GO:0090304,GO:0090421,GO:0097159,GO:0098813,GO:0099402,GO:0140014,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905392,GO:1905818,GO:1905820,GO:1990234,GO:2000241,GO:2000242,GO:2001252
EggNOG free text desc.metaphase/anaphase transition of mitotic cell cycle
EggNOG OGsCOG0457@1,KOG1126@2759
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Exons1
Model size204
Cds size204
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.8064897-CDS-H-paniculata_contig6205:6902..71061622930705.8064897-CDS-H-paniculata_contig6205:6902..7106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 6903..7106 +
1691481415.2334762-CDS-H-paniculata_contig6205:6902..71061691481415.2334762-CDS-H-paniculata_contig6205:6902..7106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 6903..7106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6205.13941.1prot_H-paniculata_contig6205.13941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6205 6903..7106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6205.13941.1

>prot_H-paniculata_contig6205.13941.1 ID=prot_H-paniculata_contig6205.13941.1|Name=mRNA_H-paniculata_contig6205.13941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MDASLRSLVYYYLDTFMYTNAVFLCERLVASDPREENVLLLATCHVREGC
ELRGHSLLQGCRLPQSR*
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mRNA from alignment at H-paniculata_contig6205:6903..7106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6205.13941.1 ID=mRNA_H-paniculata_contig6205.13941.1|Name=mRNA_H-paniculata_contig6205.13941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig6205:6903..7106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCTTCTCTGCGATCCCTCGTGTATTACTACCTCGACACCTTCAT
GTACACGAATGCAGTGTTTCTGTGCGAGAGGTTGGTGGCAAGTGACCCAC
GAGAAGAGAATGTATTGCTGCTGGCCACATGCCACGTACGTGAGGGCTGC
GAGCTGAGGGGGCACTCACTGCTGCAGGGATGTCGGTTGCCTCAGAGCAG
GTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6205:6903..7106+

>mRNA_H-paniculata_contig6205.13941.1 ID=mRNA_H-paniculata_contig6205.13941.1|Name=mRNA_H-paniculata_contig6205.13941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig6205:6903..7106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGCTTCTCTGCGATCCCTCGTGTATTACTACCTCGACACCTTCAT
GTACACGAATGCAGTGTTTCTGTGCGAGAGGTTGGTGGCAAGTGACCCAC
GAGAAGAGAATGTATTGCTGCTGGCCACATGCCACGTACGTGAGGGCTGC
GAGCTGAGGGGGCACTCACTGCTGCAGGGATGTCGGTTGCCTCAGAGCAG
GTGAATGGATGCTTCTCTGCGATCCCTCGTGTATTACTACCTCGACACCT
TCATGTACACGAATGCAGTGTTTCTGTGCGAGAGGTTGGTGGCAAGTGAC
CCACGAGAAGAGAATGTATTGCTGCTGGCCACATGCCACGTACGTGAGGG
CTGCGAGCTGAGGGGGCACTCACTGCTGCAGGGATGTCGGTTGCCTCAGA
GCAGGTGA
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