mRNA_H-paniculata_contig6205.13940.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6205.13940.1
Unique NamemRNA_H-paniculata_contig6205.13940.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: D7FXT0_ECTSI (COX19 homolog, cytochrome c oxidase assembly protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXT0_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 2.770e-54
Identity = 88/131 (67.18%), Postives = 100/131 (76.34%), Query Frame = 1 
Query:    1 MAAIPKAKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVKQRGGGWLSSIWPKK 393
            M AI  AK  R PEKGSFPLDHGGECK  MKA           FL CL ++D+DHLPCK+LSKLYL CRM+RNLMA+EEF KLGFS+EE+Y+RIR Q  V EG KEG GFVGGTH++QRGGGWLS+ W KK
Sbjct:    1 MVAIAPAKGARAPEKGSFPLDHGGECKPHMKA-----------FLACLKKHDSDHLPCKSLSKLYLACRMDRNLMAREEFEKLGFSTEEEYERIRRQAPVKEGTKEGEGFVGGTHIRQRGGGWLSN-WKKK 119
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: A0A485L9S8_9STRA (Aste57867_18330 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9S8_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.810e-26
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:   19 AKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVK 351
            A +++PPE G+FPLDH GECK  MK            FL CL E+ N H+ CK LS+ YLECRM++ LM KE   KLGFS +++Y + R +   +EG KE  GFV G  VK
Sbjct:    8 ASTSKPPELGAFPLDHYGECKDHMKT-----------FLACLKEHKNSHIECKHLSQKYLECRMDKGLMQKENLDKLGFS-DDNYAKARAKAETIEGNKEKDGFVSGLGVK 106
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: K3XC89_GLOUD (CHCH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC89_GLOUD)

HSP 1 Score: 99.8 bits (247), Expect = 1.230e-24
Identity = 57/111 (51.35%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:   19 AKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVK 351
            ++S RPPEKGSFPLDH GECK  MK            FL C+ E+   H+ CK  SK YLECRM++ LM +EE   LGF  EE  ++IR  T   EGKKE  GFV G  VK
Sbjct:    8 SQSKRPPEKGSFPLDHYGECKPFMKD-----------FLACMKEHRGSHIDCKHFSKAYLECRMDKGLMQEEELDHLGFH-EEGMRKIR--TKTFEGKKEEEGFVAGLGVK 104
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: A0A067CIX3_SAPPC (CHCH domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CIX3_SAPPC)

HSP 1 Score: 99.0 bits (245), Expect = 2.620e-24
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:   19 AKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVK 351
            A +TRPPEKG+FPLDH GECK  +K            +L CL E  N+H+ CK LS+ YL+CRM++ LM  E   KLGF  E+ YK  R ++   EGK+E  GFV GT +K
Sbjct:    8 ATTTRPPEKGAFPLDHYGECKEQIKV-----------YLACLREKSNNHIDCKHLSQQYLQCRMDKGLMQPENLEKLGFD-EKSYKTGRARS--FEGKREKEGFVAGTGIK 104
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: A0A484E1N8_BRELC (CHCH domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E1N8_BRELC)

HSP 1 Score: 99.4 bits (246), Expect = 2.740e-24
Identity = 57/117 (48.72%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:    4 AAIPKAKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVKQ 354
            AA   ++  RPPEKGSFPLDH GECK +MK+           FL CL E+ N H+ CK L+  YL+CRME+ LM  EE  KLGF  E   K    QT   EG+KE  GFV G  +K+
Sbjct:   17 AAQAPSQRKRPPEKGSFPLDHYGECKPAMKS-----------FLACLREHGNSHIDCKKLAASYLQCRMEKGLMQPEELGKLGFHEEGMKKTWTDQTN--EGRKESEGFVAGMGIKK 120
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: A0A024U4P9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4P9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.610e-24
Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:   19 AKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVKQRG 360
            A   +PPEKGSFPLDH GECK+ MK            FL CL E  N H+ CK LS+ YL+CRM++ LM +E    LGF+ E  +++ R +   LEG +E  GFV G   K  G
Sbjct:    8 ASQAKPPEKGSFPLDHYGECKTQMKT-----------FLACLKETKNSHIDCKHLSQDYLQCRMDKGLMQQENLDLLGFNKE-SFEKARAKAAPLEGVREKDGFVSGLRAKAGG 109
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: A0A6A3N325_9STRA (CHCH domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3N325_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.120e-23
Identity = 56/117 (47.86%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:    4 AAIPKAKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVKQ 354
            AA   ++S RPPEKGSFPLDH GECK +MK            FL C+ E+ N H+ CK LS  YL+CRM++ LM  EE  KLGF  E   K    +T   EG+KE  GFV G  +K+
Sbjct:    3 AAQAPSQSKRPPEKGSFPLDHYGECKPAMKT-----------FLSCMREHGNSHIDCKKLSADYLQCRMDKGLMQPEELEKLGFHEEAMKKTWTNKTN--EGRKEVEGFVAGMGIKK 106
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: A0A0P1B7V8_PLAHL (Related to cox19-cytochrome c oxidase assembly protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7V8_PLAHL)

HSP 1 Score: 99.0 bits (245), Expect = 1.710e-23
Identity = 55/117 (47.01%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:    4 AAIPKAKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVKQ 354
            AA   +++ RPPEKGSFPLDH GECK +MK            FL C+ ++ N H+ CK LS  YL+CRM++ LM  EE  KLGF  E   K  + +T   EG+KEG GFV G  +K+
Sbjct:    3 AAQAPSQNKRPPEKGSFPLDHYGECKPAMKE-----------FLACMRKHGNSHIDCKQLSASYLQCRMDKGLMQSEELEKLGFHEEGMKKTWKDKTN--EGRKEGEGFVAGLGIKK 106
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: A0A5D6Y2A8_9STRA (CHCH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2A8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.000e-23
Identity = 55/107 (51.40%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:   31 RPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVK 351
            RPPEKGSFPLDH GECK  MK            FL C+ E+   H+ CK LSK YL+CRM++ LM +EE   LGF +E   ++ R  TV  EG+KEG GFV G  VK
Sbjct:   12 RPPEKGSFPLDHYGECKPLMKD-----------FLACMREHRGSHIDCKHLSKSYLQCRMDKGLMKEEELENLGFHAE-GMRKSRKPTV--EGRKEGEGFVAGLGVK 104
[Close]
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Match: A0A1W0A0M4_9STRA (CHCH domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0M4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.270e-23
Identity = 52/111 (46.85%), Postives = 68/111 (61.26%), Query Frame = 1 
Query:   19 AKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDENDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVVLEGKKEGTGFVGGTHVK 351
            A +TRPPEKG+FPLDH GECK  +K            +L+CL +  N+ + CK L++ YLECRME+ LM +E   KLGF  E+ Y    G+    EGK+E  GFV GT +K
Sbjct:    8 ATTTRPPEKGAFPLDHYGECKEPIKV-----------YLECLRQKKNNQIDCKHLAQRYLECRMEKGLMQRENLDKLGFD-EKSYNT--GRATSSEGKREKEGFVAGTGIK 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6205.13940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXT0_ECTSI2.770e-5467.18COX19 homolog, cytochrome c oxidase assembly prote... [more]
A0A485L9S8_9STRA2.810e-2648.65Aste57867_18330 protein n=1 Tax=Aphanomyces stella... [more]
K3XC89_GLOUD1.230e-2451.35CHCH domain-containing protein n=1 Tax=Globisporan... [more]
A0A067CIX3_SAPPC2.620e-2448.65CHCH domain-containing protein n=3 Tax=Saprolegnia... [more]
A0A484E1N8_BRELC2.740e-2448.72CHCH domain-containing protein n=1 Tax=Bremia lact... [more]
A0A024U4P9_9STRA3.610e-2445.61Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A3N325_9STRA1.120e-2347.86CHCH domain-containing protein n=1 Tax=Phytophthor... [more]
A0A0P1B7V8_PLAHL1.710e-2347.01Related to cox19-cytochrome c oxidase assembly pro... [more]
A0A5D6Y2A8_9STRA3.000e-2351.40CHCH domain-containing protein n=1 Tax=Pythium bra... [more]
A0A1W0A0M4_9STRA3.270e-2346.85CHCH domain-containing protein n=1 Tax=Thraustothe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6205contigH-paniculata_contig6205:1710..6395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue1.2e-41
Seed eggNOG ortholog2880.D7FXT0
Preferred nameCOX19
KEGG rclassRC00822
KEGG koko:K01598,ko:K18183
KEGG ReactionR03269
KEGG Pathwayko00770,ko01100,ko04714,map00770,map01100,map04714
KEGG ModuleM00120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006091,GO:0006810,GO:0006811,GO:0006812,GO:0006873,GO:0006875,GO:0006878,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008535,GO:0009060,GO:0009987,GO:0015980,GO:0016043,GO:0017004,GO:0019725,GO:0022607,GO:0030001,GO:0030003,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033108,GO:0033617,GO:0034622,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046872,GO:0046914,GO:0046916,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071840,GO:0098771
EggNOG free text desc.mitochondrial respiratory chain complex IV assembly
EggNOG OGsKOG3477@1,KOG3477@2759
Ec32 ortholog descriptionCOX19 homolog, cytochrome c oxidase assembly protein
Ec32 orthologEc-03_001590.1
EC4.1.1.36
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons4
Model size399
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6205.13940.1prot_H-paniculata_contig6205.13940.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6205 1710..6395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.7072518-CDS-H-paniculata_contig6205:1709..17851622930705.7072518-CDS-H-paniculata_contig6205:1709..1785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 1710..1785 -
1691481415.1937752-CDS-H-paniculata_contig6205:1709..17851691481415.1937752-CDS-H-paniculata_contig6205:1709..1785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 1710..1785 -
1622930705.7263799-CDS-H-paniculata_contig6205:2640..27481622930705.7263799-CDS-H-paniculata_contig6205:2640..2748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 2641..2748 -
1691481415.2046483-CDS-H-paniculata_contig6205:2640..27481691481415.2046483-CDS-H-paniculata_contig6205:2640..2748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 2641..2748 -
1622930705.746367-CDS-H-paniculata_contig6205:3325..34141622930705.746367-CDS-H-paniculata_contig6205:3325..3414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 3326..3414 -
1691481415.214526-CDS-H-paniculata_contig6205:3325..34141691481415.214526-CDS-H-paniculata_contig6205:3325..3414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 3326..3414 -
1622930705.763078-CDS-H-paniculata_contig6205:6269..63951622930705.763078-CDS-H-paniculata_contig6205:6269..6395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 6270..6395 -
1691481415.2224116-CDS-H-paniculata_contig6205:6269..63951691481415.2224116-CDS-H-paniculata_contig6205:6269..6395Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6205 6270..6395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6205.13940.1

>prot_H-paniculata_contig6205.13940.1 ID=prot_H-paniculata_contig6205.13940.1|Name=mRNA_H-paniculata_contig6205.13940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MAAIPKAKSTRPPEKGSFPLDHGGECKSSMKARDELRNSILNAFLQCLDE
NDNDHLPCKTLSKLYLECRMERNLMAKEEFCKLGFSSEEDYKRIRGQTVV
LEGKKEGTGFVGGTHVKQRGGGWLSSIWPKKQ*
back to top

mRNA from alignment at H-paniculata_contig6205:1710..6395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6205.13940.1 ID=mRNA_H-paniculata_contig6205.13940.1|Name=mRNA_H-paniculata_contig6205.13940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4686bp|location=Sequence derived from alignment at H-paniculata_contig6205:1710..6395- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCTATACCGAAGGCAAAGAGCACCCGGCCGCCGGAAAAGGGGTC
CTTCCCACTTGATCATGGCGGCGAGTGCAAGTCTTCCATGAAGGCAAGGG
ATGAATTAAGAAATAGTATACTAAATGTTTCGCTAAATACGTTTTATAGA
CAGTTGCAGCGACCAATCTGGCTCTCTACATTATATCCTCCTCCAGGTGA
CTTAAGCTTGATCAATATGGTCGCACAAAATCAAGGTATACATGACTGGA
CACAACGCAGATTGCACCGTATTTCCGGAAGAAGTGCGATATAGCAGTAT
AATGGATTCCGAGCTGCCGAAAAACTCGCCCTCGATTGCTGGCTCTGCTT
CGTTCTCTGCCGTCTGTCACTGTCGGTGATGCCTCCCAAACGGAAACACC
ACCGCAGGCAGCCTTATCTACTCTCGCGAATGCCGGCGCAGTACGAGCAA
TATCGGCAGCCAACCCGATGCCACCGCCGACGCCGCCGCCGGGTAGAAGC
ATTCGTTAACTCGTCCGCCGAGCTGCCAACAGTAGCAAGAGACACCCGCC
TCGGTATCCGCCAGCTGTCGGTCCCATGGCGCAAAAAAGAGACGGGTACT
CCGAGGCATCAAACACTGGCACTCTCTCGCCCTCCGCCGTGGCCCACCGC
ACAATCATGGGAACCATCGGCTGAGCTCACTGCGGCCTCGAGAGGAGAAA
AATTCGCCAACGTCTCTCCGACAGTGGGTATGTGCCTCAGCTTGCCCCTG
GTATCCACCGGCGATGCGTTGCTCTACTCCAGTGTTGCCTCGTCGGGGGA
GCCCAACCACAACATTCAAGATTCGACATGCGAACTAGTCGACAAGACTG
AGGTCGACTACGGACTGCAATCTAAGGAAACCCTAGACCCATAATGCGGC
ACGAGACCTGCCAGCTGTAATGGGGGCTTTGCTGGTTTCCGCGGTACAAA
GAATGAGAGTAGAGCGTATTTTGTAGTCTTTAGTTATTGCCGAAAGGGGG
TTCACAAGCTAGCTATCGCGATAGCTCTTAGTTACTATAACCGTGGGTCG
ACGACGAACATAACCAAGGATGTAAGAGTGTAGGACGCAGCACCTCCTTG
TTTTCAGTTTGAACTGCTCTTGGGCGTAGAAAAGCACGGTTCGCCTCAAG
ACCAATGACAACAGACCGTTTCTCGGTGTGTGAGATATTGGAGAAAATCT
ATGTCTCTGACGCAAATAATTGAAGGCCCTCACTGTTAATAACACCATGC
ACGGTTTTAGCTGGATATTCTGAATACAACAACCAATTGATGTAAGCCAA
TCAATACAAAGACCACCATCCAATTATCACCATCCCAGTCGCATCGCGTG
TCGTCGGCCGTGATATTGTGGTTTGTGCCTCGTGAATGCGCAATAGCTAG
TGTTTTCTCCCTCGTGCGGTGTGCCTGAATGATTCAATATGTGCAGAAAT
TGTAAAAAGGACCAGCACTTTAATATCACTCGGTAATTCCTACTGGGCTG
GACATACGATATTTTCGAGAGATCACAAATCACGAACACAGGATCACTTT
GACGCGATCTCACAGCTGGTAGCGGGTGCATATTTCGTTCATCATAGCAT
GCTCGCTGTCGAGCGGATCATATCTGCAGTATAGTCAGAACTCTTATCAG
TACAAGTAAGTGCATAGCACTGTGGGCAGAAACATATAAGAAATTCAGTT
GATGACACAGAATATCTGCACCTCCAAGCGGGTCATCTTCTATCACCAGT
CAGGGCATACACTGTACTTACCAGCAAAGAGATCTCGGCCAGCTTGAAAT
CGGTGTGTTGAAAGATATAAAAATGTGACCGATAACAACAAAAAACTGCG
TCTGTCTGCGCCAGCGGTGATCGTTTAATCCAATCGCTATTTTGTTGGTT
ATACCACCGCTACTCGCTTGCTCTACGCCATACGAGAAGGTGCGTATATA
TGTTTTATGTATGGCCAACGGAATTAGACTACTGTAGGTGATAATCTAAT
GTGATGGAAATATATATACAGCGGCAGATGCTACTGTGCATAAACAAATG
CCCCCCCCCCCCCCCCACCAAGTTTAACGTGCAGTTTTCCTGGTTGATAG
CAGCTCAGGCAAAGCGTCTCAGGTGAATGCGACGATGGTAGACATAGGGT
AGGGTGCGGAGAGTCGGGCTTCTAAGGCCCGCCCTAGTCGGCAGTAGCAG
AGTCAAGAACTTCAGAACACTCCCACACATCTTAAGCGATAGTTTGAATT
ATATGTCTGCTATTCGGGAATACGTAATCTTCTAAAACGTCGAATACTTT
AACCCCCCGGACAAATGCGAATACTTGACGTAGTCGCCACGAAAATGAAA
AAGTATTCGTCGAAGTTTCATAACGAGCTCGTTTATTCCATGTGCCCCGG
ACCATCCACGACTGCTAATCATACTCGTAAATCGAATGCACGGGGCTGGG
TACTACTCTTGTTTTTTTCATGTGTCCGCTCGTTCTGAAACTCAGACGAA
TAATTTTTCATTTCGTGGTGAATACCCCAATTTTTCGTATTTGTCCCGGG
GAGTGAATGCTTGATACTTCAGAGTTGTTGAATTGTTTTTATGCAAATTT
TCTAGCCCGCCCCCAAGATTTGTCTCTTCTAAACGTTTTTTCTGTTTACC
GCTTTAAGCTTTATTTTTTTTCTTCGGTGCAGAGGGCGGGAAATGTGCTC
TACAATTTGAGAAAAGAAAAAATTGATTGAAAGAAAAAGGACCTCTACTA
TCGTCGGTAAACATCGGACTTGCTTGCGTCTGAAATTTTATAGAAGGAAA
ATATTGAATTTGTATAACGGTCATGATATGCTACAGTATCGTTTTGTTTT
TCACGGGGGAGCGTTTGAGCCAGCGGGGGCAGCGATAGGAAACCTCAAAC
AGTAGGAGCACGCTGCGGGTTGTGCAACGACAGCAGCCGAATTCACCCCA
TGTCGCGGCCGCGCATGTGAACGCAACGCAGGCCTTCTTGCAGTGCCTTG
ACGAGAATGACAACGATCACCTTCCGTGCAAGACCTTGTCCAAGCTCTAC
CTGGAGTGCAGGATGGAGAGGTACGCTAGAGAGGCAACCACACCACCGGG
TATATAAATTGTGTCGAAACATACAAAGCGCAGACCCCAGAGACGATTGC
CGTGGGACATGACTCTGTACTAACCACGCTTTCTGAACGACATCCTGAAG
GCGCTAATTTTTCAGTGTTGACCTTATGGTTATACCGGCAATAAGTAGTA
GAGACCGCGTTGTGGGTTGCTGTGCTACAACTCTGCACTGAAAGGAAGAG
GAAATCTAGAGTTTTTTCAGCAGGCAGGGGCGCGTTGGGTGATTCCTATC
TTGAATTCACGTTGTGTTTTTGTGTGAAGATCATCAATTAACACAGAGAC
ATGCGGCAATACAGGCTCTATTTACCGTTTGTACCGAAACCAAACGTCAG
GTTGAGCGATATATCTGGGTATCAGTGACGCCATATCAAGGTCCAGCAAC
AGTGTACGTTCTCTCCCTGTAGGCAATGTTGCTGATGGGGATGTCTGAAA
GGTTCATTGACACCAATTTTATGCAGTGAGAACTTACCCCAGCCCTGGAA
ACCATGCTTTCAATTTCCGTGTATGCTTCGGTGTCTTGTTTGACCAGGAA
TCTCATGGCAAAAGAGGAGTTCTGCAAGCTAGGGTTTAGCTCAGAGGAGG
ACTACAAAAGAATACGAGGACAAACGGTCGTGCTAGAGGGCAAGAAAGAA
GGTACGTCTACAGGTTGGAAACACGTGCTGCGTTACAAGTAGCCGCGGCC
GTGCGAACATTTTCTGCATCGCGAGTGTAGTGTATCGGTATGCGTGTGTT
AGGGCCTCAACACTGATGAGTACCGCGTATCAAATTGACAATCTTTGAGC
GGAAGATACCCGAGCAATCGTTCAACCCCCCCCGGACAATTACGAATGCA
AGACACAAATAAACACGAGAAATCTGGAATGAATACTGTATCTGATTTGA
GTTGGGGAAGATATTCATGTGACGCGAGTAACATGCAGTGTACTCGATAT
ATCCATGGGAGCATCGAAAAGCTCGGGCAGATAGAGAATTCAATCCGTAC
AGCACCATCCAGAAAAAAACCGGGCCTGCATTTGTGACTGTTCGCCGGGT
ATACGACCACCTGGTGAGCGTCTGTAAAGGACCATTCATAGACTTGTGAA
CGAGTAAATCCGTGTTTATCCAAAACAATACTGATAGTAGTTCGAGATAG
TTGCGAGTGCTCCGTGCGTATTTGTTCGGTGGGTGGGGTGCACTCGTGTT
GTTTTATGGATTTTTGTACAAGAGAGTCATTTCAACGGAACAGTTTGGGG
ACAAATTGGCGAGTTTGACGGATCAAGTGTCTCTCGTATCGGGCGCAAAG
AACTATGGTATACACGAATAGCCCCTGTGCATGTGTGATATTGCTGAACT
ATACTCCCCAAAAGTGAAAACAAGCTGCAGGAACAAGCCCGATCTGTAAG
CGTACTCGTACGTGTCCGTTTTCAAAAGGGCTGCTTACATCCTCGACTTC
CCCCCGATGAAAAACAATCGTTTGCTGGCCTCTCCCCTCGTTCCGCCCAT
GTTTAGAGAGAGGATTTGTAGGCGGGACTCACGTGAAACAGCGTGGAGGA
GGCTGGCTGTCTTCGATTTGGCCGAAAAAGCAATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6205:1710..6395-

>mRNA_H-paniculata_contig6205.13940.1 ID=mRNA_H-paniculata_contig6205.13940.1|Name=mRNA_H-paniculata_contig6205.13940.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig6205:1710..6395- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGCTATACCGAAGGCAAAGAGCACCCGGCCGCCGGAAAAGGGGTC
CTTCCCACTTGATCATGGCGGCGAGTGCAAGTCTTCCATGAAGGCAAGGG
ATGAATTAAGAAATAGTATACTAAATATGGCTGCTATACCGAAGGCAAAG
AGCACCCGGCCGCCGGAAAAGGGGTCCTTCCCACTTGATCATGGCGGCGA
GTGCAAGTCTTCCATGAAGGCAAGGGATGAATTAAGAAATAGTATACTAA
ATGCCTTCTTGCAGTGCCTTGACGAGAATGACAACGATCACCTTCCGTGC
AAGACCTTGTCCAAGCTCTACCTGGAGTGCAGGATGGAGAGGCCTTCTTG
CAGTGCCTTGACGAGAATGACAACGATCACCTTCCGTGCAAGACCTTGTC
CAAGCTCTACCTGGAGTGCAGGATGGAGAGGAATCTCATGGCAAAAGAGG
AGTTCTGCAAGCTAGGGTTTAGCTCAGAGGAGGACTACAAAAGAATACGA
GGACAAACGGTCGTGCTAGAGGGCAAGAAAGAAGGTACGAATCTCATGGC
AAAAGAGGAGTTCTGCAAGCTAGGGTTTAGCTCAGAGGAGGACTACAAAA
GAATACGAGGACAAACGGTCGTGCTAGAGGGCAAGAAAGAAGGTACAGGA
TTTGTAGGCGGGACTCACGTGAAACAGCGTGGAGGAGGCTGGCTGTCTTC
GATTTGGCCGAAAAAGCAATGAAGGATTTGTAGGCGGGACTCACGTGAAA
CAGCGTGGAGGAGGCTGGCTGTCTTCGATTTGGCCGAAAAAGCAATGA
back to top