mRNA_H-paniculata_contig62019.13938.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62019.13938.1
Unique NamemRNA_H-paniculata_contig62019.13938.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.940e-9
Identity = 35/101 (34.65%), Postives = 53/101 (52.48%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYETCSNLFVTVANGETLPIEGYGK-VLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLNEGGTTITRPNG 309
            W+  SGA+AHMT        +E     ++T+A+G+   I G G  VL  +    E+ +  +S V +VPGL TNL S++ + ++ L V  N  G  I  P G
Sbjct:  275 WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKG 375          
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.400e-8
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYETCS-NLFVTVANGETLPIEGYGKVLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLNEGGTTI 294
            W+  SGATAHMTP    +F+YE    N+ VT+A+G+ + + G G V +   D   I    +  V H+PGLD  L S+  + ++G++V   +    I
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVI 355          
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.420e-8
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYETC-SNLFVTVANGETLPIEGYGKVLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTV 267
            W+  SGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G V +   D   I       V H+PGLD  L S+  + ++GL V
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.740e-8
Identity = 34/86 (39.53%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYE-TCSNLFVTVANGETLPIEGYGKVLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLT 264
            W+  SGAT+HMTP  E +FD E T S++ VT+A+G+ L + G G V +   +   I    +  V ++PGLD  L S+  + ++GLT
Sbjct:  155 WLIDSGATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.740e-8
Identity = 31/87 (35.63%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYETCS-NLFVTVANGETLPIEGYGKVLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTV 267
            W+  SGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G V +   D   I    +  V ++PGLD  L S+  + ++G++V
Sbjct:  245 WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSV 328          
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.350e-8
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYETC-SNLFVTVANGETLPIEGYGKVLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLNEGGTTI 294
            W+  SGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G V +   D   I       V ++PGLD  L S++ + ++G++V   +   TI
Sbjct:  266 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSVEFQKKSCTI 358          
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.200e-7
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYETC-SNLFVTVANGETLPIEGYGKVLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLNEGGTTI 294
            W+  SGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G V +   D   I       V ++PGLD  L S+  + ++G++V   +   TI
Sbjct:  242 WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVEFQKKSCTI 334          
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: A0A535F6U2_9CHLR (DDE-type integrase/transposase/recombinase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535F6U2_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 1.660e-7
Identity = 33/101 (32.67%), Postives = 55/101 (54.46%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYETCSN-LFVTVANGETLPIEGYGKVLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLNE-GGTTITRPN 306
            W+  SGA+ H TP   ++ DY+T    + V  A G+   I G G V + ++ +G     +L +V HVPG+D+NL S  +++ +G  + ++   GT I   N
Sbjct:  306 WILDSGASEHFTPYKHVLIDYKTLDKPVEVNTAKGKLFGI-GTGNVHLTVEGQGGFTPITLHKVLHVPGMDSNLLSSNVLLGKGFEINMHPVKGTNILADN 405          
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: A0A6A3IEW9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3IEW9_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.030e-6
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYETC-SNLFVTVANGETLPIEGYGKVLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLNEGGTTI 294
            W+  SGAT HMTP    +F+Y+   SN+ VT+A+G+ + + G G V +   D   I       V ++PGLD  L S+  +  +G++V   +   TI
Sbjct:  266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358          
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Match: A0A6A3KTF1_9STRA (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KTF1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.050e-6
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   10 WVAGSGATAHMTPSDELMFDYETC-SNLFVTVANGETLPIEGYGKVLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLNEGGTTI 294
            W+  SGAT HMTP    +F+Y+   SN+ VT+A+G+ + + G G V +   D   I       V ++PGLD  L S+  +  +G++V   +   TI
Sbjct:  266 WLIDSGATVHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLADRGVSVEFQKKSCTI 358          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62019.13938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
Q967L5_AEDAE3.940e-934.65Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
A0A329SN38_9STRA2.400e-835.42Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA2.420e-839.08CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A2P4XNP3_9STRA4.740e-839.53Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A225UGS0_9STRA5.740e-835.63Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A6A3X5U6_9STRA8.350e-835.42CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
A0A6A4BQ03_9STRA1.200e-735.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A535F6U2_9CHLR1.660e-732.67DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A6A3IEW9_9STRA1.030e-634.38Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KTF1_9STRA1.050e-634.38Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62019contigH-paniculata_contig62019:143..451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue9.9e-09
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.4476826-CDS-H-paniculata_contig62019:142..4511622930705.4476826-CDS-H-paniculata_contig62019:142..451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62019 143..451 -
1691481415.1173503-CDS-H-paniculata_contig62019:142..4511691481415.1173503-CDS-H-paniculata_contig62019:142..451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62019 143..451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62019.13938.1prot_H-paniculata_contig62019.13938.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62019 143..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62019.13938.1

>prot_H-paniculata_contig62019.13938.1 ID=prot_H-paniculata_contig62019.13938.1|Name=mRNA_H-paniculata_contig62019.13938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
EEFWVAGSGATAHMTPSDELMFDYETCSNLFVTVANGETLPIEGYGKVLV
WMKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLNEGGTTITR
PNG
back to top

mRNA from alignment at H-paniculata_contig62019:143..451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62019.13938.1 ID=mRNA_H-paniculata_contig62019.13938.1|Name=mRNA_H-paniculata_contig62019.13938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=309bp|location=Sequence derived from alignment at H-paniculata_contig62019:143..451- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTTTGGGTAGCCGGTAGTGGGGCTACGGCCCACATGACTCCGTC TGACGAGTTGATGTTTGATTATGAAACCTGCAGTAACTTGTTTGTGACGG TGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAGGTGTTGGTA TGGATGAAAGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGC GCATGTTCCAGGCCTGGACACGAATTTGTTTTCCCTACAGATTGTAGTGA AGCAGGGACTTACTGTCTGTTTGAACGAGGGGGGTACCACAATTACACGA CCTAATGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig62019:143..451-

>mRNA_H-paniculata_contig62019.13938.1 ID=mRNA_H-paniculata_contig62019.13938.1|Name=mRNA_H-paniculata_contig62019.13938.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig62019:143..451- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTTTGGGTAGCCGGTAGTGGGGCTACGGCCCACATGACTCCGTC
TGACGAGTTGATGTTTGATTATGAAACCTGCAGTAACTTGTTTGTGACGG
TGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAGGTGTTGGTA
TGGATGAAAGATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGC
GCATGTTCCAGGCCTGGACACGAATTTGTTTTCCCTACAGATTGTAGTGA
AGCAGGGACTTACTGTCTGTTTGAACGAGGGGGGTACCACAATTACACGA
CCTAATGGGGAGGAGTTTTGGGTAGCCGGTAGTGGGGCTACGGCCCACAT
GACTCCGTCTGACGAGTTGATGTTTGATTATGAAACCTGCAGTAACTTGT
TTGTGACGGTGGCTAACGGCGAAACGCTTCCGATTGAGGGATATGGTAAG
GTGTTGGTATGGATGAAAGATCGGGGCGAGATACACAAATTCAGCTTGAG
TCGTGTAGCGCATGTTCCAGGCCTGGACACGAATTTGTTTTCCCTACAGA
TTGTAGTGAAGCAGGGACTTACTGTCTGTTTGAACGAGGGGGGTACCACA
ATTACACGACCTAATGGG
back to top