prot_H-paniculata_contig62001.13935.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig62001.13935.1
Unique Nameprot_H-paniculata_contig62001.13935.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length54
Homology
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BLAST of mRNA_H-paniculata_contig62001.13935.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.320e-19
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0 
Query:    2 QARRQWERVLRHFGKRLAPWLEAVAWERRSTGELEACRRLFARAVREVQDYPD 54
            QARRQW+RVLRH GKRL  W EA+ WERRSTG+L ACRRL+AR++ EVQDYP+
Sbjct:  487 QARRQWDRVLRHSGKRLVSWEEAIKWERRSTGDLAACRRLYARSLNEVQDYPE 539
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62001.13935.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJP0_ECTSI3.320e-1973.58Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..53
e-value: 1.0E-5
score: 26.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62001contigH-paniculata_contig62001:370..531 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62001.13935.1mRNA_H-paniculata_contig62001.13935.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig62001 352..531 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig62001.13935.1 ID=prot_H-paniculata_contig62001.13935.1|Name=mRNA_H-paniculata_contig62001.13935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MQARRQWERVLRHFGKRLAPWLEAVAWERRSTGELEACRRLFARAVREVQ
DYPD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf