mRNA_H-paniculata_contig62001.13935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62001.13935.1
Unique NamemRNA_H-paniculata_contig62001.13935.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig62001.13935.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 8.040e-19
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   22 QARRQWERVLRHFGKRLAPWLEAVAWERRSTGELEACRRLFARAVREVQDYPD 180
            QARRQW+RVLRH GKRL  W EA+ WERRSTG+L ACRRL+AR++ EVQDYP+
Sbjct:  487 QARRQWDRVLRHSGKRLVSWEEAIKWERRSTGDLAACRRLYARSLNEVQDYPE 539
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62001.13935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJP0_ECTSI8.040e-1973.58Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62001contigH-paniculata_contig62001:352..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue9.8e-16
Seed eggNOG ortholog2880.D8LJP0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.positive regulation of histone deubiquitination
EggNOG OGsKOG0128@1,KOG0128@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size180
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.216241-UTR-H-paniculata_contig62001:351..3691622930705.216241-UTR-H-paniculata_contig62001:351..369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62001 352..369 +
1691481415.0326061-UTR-H-paniculata_contig62001:351..3691691481415.0326061-UTR-H-paniculata_contig62001:351..369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig62001 352..369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930705.2343554-CDS-H-paniculata_contig62001:369..5311622930705.2343554-CDS-H-paniculata_contig62001:369..531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62001 370..531 +
1691481415.0449736-CDS-H-paniculata_contig62001:369..5311691481415.0449736-CDS-H-paniculata_contig62001:369..531Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62001 370..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62001.13935.1prot_H-paniculata_contig62001.13935.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62001 370..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62001.13935.1

>prot_H-paniculata_contig62001.13935.1 ID=prot_H-paniculata_contig62001.13935.1|Name=mRNA_H-paniculata_contig62001.13935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
MQARRQWERVLRHFGKRLAPWLEAVAWERRSTGELEACRRLFARAVREVQ
DYPD
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mRNA from alignment at H-paniculata_contig62001:352..531+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62001.13935.1 ID=mRNA_H-paniculata_contig62001.13935.1|Name=mRNA_H-paniculata_contig62001.13935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig62001:352..531+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACATACCACGCACACCACATGCAGGCGAGGCGCCAATGGGAACGCGTCCT
GCGGCACTTCGGCAAACGCCTTGCCCCATGGCTGGAGGCGGTGGCATGGG
AACGCCGGAGCACGGGGGAGCTAGAGGCGTGTCGGCGGCTGTTTGCCAGG
GCTGTGAGGGAGGTGCAGGACTACCCAGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig62001:352..531+

>mRNA_H-paniculata_contig62001.13935.1 ID=mRNA_H-paniculata_contig62001.13935.1|Name=mRNA_H-paniculata_contig62001.13935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig62001:352..531+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGCGAGGCGCCAATGGGAACGCGTCCTGCGGCACTTCGGCAAACG
CCTTGCCCCATGGCTGGAGGCGGTGGCATGGGAACGCCGGAGCACGGGGG
AGCTAGAGGCGTGTCGGCGGCTGTTTGCCAGGGCTGTGAGGGAGGTGCAG
GACTACCCAGATATGCAGGCGAGGCGCCAATGGGAACGCGTCCTGCGGCA
CTTCGGCAAACGCCTTGCCCCATGGCTGGAGGCGGTGGCATGGGAACGCC
GGAGCACGGGGGAGCTAGAGGCGTGTCGGCGGCTGTTTGCCAGGGCTGTG
AGGGAGGTGCAGGACTACCCAGAT
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