mRNA_H-paniculata_contig61996.13929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61996.13929.1
Unique NamemRNA_H-paniculata_contig61996.13929.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: D1J7B8_ECTSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog n=9 Tax=Ectocarpales TaxID=2877 RepID=D1J7B8_ECTSI)

HSP 1 Score: 543 bits (1399), Expect = 1.320e-185
Identity = 289/300 (96.33%), Postives = 295/300 (98.33%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDDDAVDIL 900
            L  R +GQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAED+MVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTV+LFDEVEKAHPDVFNLLLQILEDGRLTDSKGR+IDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTK+NITEIA IMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDD+D VDIL
Sbjct:  535 LHQRVIGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDAMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVILFDEVEKAHPDVFNLLLQILEDGRLTDSKGRIIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKTNITEIAVIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDEDPVDIL 834
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BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: A0A0R6M4R6_UNDPI (ATP-dependent clp protease ATP-binding subunit n=63 Tax=Phaeophyceae TaxID=2870 RepID=A0A0R6M4R6_UNDPI)

HSP 1 Score: 505 bits (1301), Expect = 5.670e-171
Identity = 268/293 (91.47%), Postives = 283/293 (96.59%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDD 879
            L  R +GQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQ+N+L+SQG+GFGG+  DT+KTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTK+NI +IA IMV DLIERVK EK+I+LSLTPRMMELL+EEGFNPTYGARPLRRA+VKLVEDKVSLEYLRYK ++DD
Sbjct:  530 LHQRVIGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQNNELASQGIGFGGDTGDTKKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKNNIKQIAVIMVKDLIERVKTEKEISLSLTPRMMELLIEEGFNPTYGARPLRRAIVKLVEDKVSLEYLRYKKDHDD 822
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BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: A0A8F0F755_9PHAE (ATP-dependent clp protease ATP-binding subunit n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F755_9PHAE)

HSP 1 Score: 490 bits (1262), Expect = 4.330e-165
Identity = 264/304 (86.84%), Postives = 283/304 (93.09%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNEND----DDDAVDIL 900
            L  R +GQKEAVSAVARA+RRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAED+MVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSK IQ+N+  + G+GFG ++  TQ T+YAQLCNTVGESLK FFKPEFLNRIDEIIVFEQLTKSNI +IA IMVNDLI RVK EK+ITLSLTPRMMELL++EGFNP YGARPLRRALVKLVEDKVS+EYLRYKN++D    ++DAVDIL
Sbjct:  530 LHTRIIGQKEAVSAVARAIRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDAMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKEIQNNETITPGIGFGDDEQATQMTRYAQLCNTVGESLKTFFKPEFLNRIDEIIVFEQLTKSNIKDIALIMVNDLIIRVKTEKEITLSLTPRMMELLIDEGFNPIYGARPLRRALVKLVEDKVSIEYLRYKNDHDGEDEEEDAVDIL 833
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BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: A0A8E6D4W2_9PHAE (Clp protease ATP binding subunit n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D4W2_9PHAE)

HSP 1 Score: 490 bits (1261), Expect = 6.290e-165
Identity = 261/303 (86.14%), Postives = 282/303 (93.07%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDDD---AVDIL 900
            L  R +GQKEAVSAVARA+RRARVGMRNMKRPIASFFFSGPTGVGKTELT XXXXXXXGAED+M+RLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGR+IDFKNTILIMTSNLGS AIQ ND  SQ +GFGGEK DT+ TKYAQLCNTVGESLK+FF+PEFLNRIDEIIVFEQLTK+NI +IAEIMV DL+ERVKK+K I+LSLT RMME+L+EEGFNPTYGARPLRRALVKLVEDKVSLEYLR+  + D++D   AV+IL
Sbjct:  531 LHTRIIGQKEAVSAVARAIRRARVGMRNMKRPIASFFFSGPTGVGKTELTKXXXXXXXGAEDAMIRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRIIDFKNTILIMTSNLGSTAIQKNDGISQDIGFGGEKRDTKTTKYAQLCNTVGESLKSFFRPEFLNRIDEIIVFEQLTKNNIKQIAEIMVKDLVERVKKDKSISLSLTTRMMEVLIEEGFNPTYGARPLRRALVKLVEDKVSLEYLRFTKDKDNEDQNPAVEIL 833
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BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: A0A2I4Q2E7_9PHAE (ATP-dependent clp protease ATP-binding subunit n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E7_9PHAE)

HSP 1 Score: 485 bits (1249), Expect = 3.380e-163
Identity = 263/310 (84.84%), Postives = 284/310 (91.61%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDND-LSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDD---------DAVDIL 900
            L  R +GQK AVSAVARA+RRARVGMRN+KRPIASFFFSGPTGVGKTE  XXXXXXXXGAED+MVRLDMSE+MERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDND  SSQGMGF  E  +T+ TKYAQLC+TVGESLK FFKPEFLNRIDEIIVFEQLTK++IT+IA IMVNDL+ERVK EKDI+LSLTPRM+ELL+EEGFNP YGARPLRRALVKLVEDKVSLEYLRY+N++D++         +AVDIL
Sbjct:  531 LHTRVIGQKAAVSAVARAIRRARVGMRNLKRPIASFFFSGPTGVGKTEXXXXXXXXXXGAEDAMVRLDMSEYMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDKTSSQGMGFAEETEETKLTKYAQLCHTVGESLKTFFKPEFLNRIDEIIVFEQLTKADITQIANIMVNDLVERVKTEKDISLSLTPRMLELLIEEGFNPIYGARPLRRALVKLVEDKVSLEYLRYQNDHDEESTQKDQQENEAVDIL 840
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BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: A0A7S6ZPD9_9STRA (ClpC n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPD9_9STRA)

HSP 1 Score: 391 bits (1005), Expect = 9.660e-127
Identity = 197/285 (69.12%), Postives = 241/285 (84.56%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYL 855
            L  R +GQ E VSAVARA+RRARVGMRN+ RPIASF FSGPTGVGKTELT        GAED+MVRLDMSE+ME+HTVAKLIG+PPGY+GYNEGGQLTEAVRRKPY VVLFDEVEKAHPD+FN+LLQ+LEDGRLTDSKGR+IDFKNTILIMTSN+GS  I++  +  + +GFG + +  ++T Y++LC+ VGE LK FFKPEFLNRIDEIIVF+QLT+  + EIA +M+N++ ER K EK+++L++T RM   L++EGFNP YGARPLRRA+V+L+EDKV+ +YL
Sbjct:  537 LHTRVIGQTEGVSAVARAIRRARVGMRNLNRPIASFMFSGPTGVGKTELTKALSSFFFGAEDAMVRLDMSEYMEKHTVAKLIGAPPGYVGYNEGGQLTEAVRRKPYIVVLFDEVEKAHPDIFNVLLQVLEDGRLTDSKGRIIDFKNTILIMTSNIGSSVIENVAVEGE-IGFGVDSS-VKETAYSKLCSLVGEELKGFFKPEFLNRIDEIIVFQQLTRDEVEEIATLMINEISERFK-EKNLSLAVTTRMRARLIDEGFNPVYGARPLRRAVVRLIEDKVAAKYL 818
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BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: C6KJ41_9STRA (ATP-dependent clp protease ATP-binding subunit n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=C6KJ41_9STRA)

HSP 1 Score: 387 bits (993), Expect = 1.540e-125
Identity = 194/285 (68.07%), Postives = 238/285 (83.51%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYL 855
            L +R +GQ++AVSAV+RA+RRARVG+RN  RPIASF FSGPTGVGKTELT        GAED+MVRLDMSEFMERHTVAKLIGSPPGY+GY+EGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGR IDFKNT+LI+TSN+G+K IQ+ND SS  +GFGG   +   + Y ++ + V E LK FF+PEFLNR+DEIIVF QLT++++++IA+IM+  L +R + +K  TL +T R   +L+ EGFNPTYGARPLRRA++KL+ED+++ + L
Sbjct:  513 LHSRIIGQEQAVSAVSRAIRRARVGLRNPNRPIASFLFSGPTGVGKTELTKALALYFFGAEDAMVRLDMSEFMERHTVAKLIGSPPGYVGYSEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRTIDFKNTMLILTSNIGAKVIQENDSSSGDIGFGGNLVNGNDSSYDRMASLVNEELKRFFRPEFLNRLDEIIVFRQLTRNDLSQIADIMLKQLCDRAE-DKSFTLKVTQRAKLVLINEGFNPTYGARPLRRAIMKLLEDRLATQLL 796
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BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: C6KIT1_AURAN (ATP-dependent clp protease ATP-binding subunit n=3 Tax=Pelagomonadales TaxID=54409 RepID=C6KIT1_AURAN)

HSP 1 Score: 382 bits (981), Expect = 1.300e-123
Identity = 193/299 (64.55%), Postives = 242/299 (80.94%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDDDAVDI 897
            L +R +GQ++AVSAV+RA+RRARVG+RN  RPIASF FSGPTGVGKTELT        GAEDSMVRLDMSE+MERHTVAKLIGSPPGY+GY+EGGQLTEAVRRKPYTVVLFDE+EKAHPDVFNLLLQILEDGRLTDSKGR IDFKNT++I+TSN+G+K I+ +  S  G+GF    +D   ++Y+++   V E LK FF+PEFLNR+DE+IVF+QLTK ++++IA+IM+  L  R + E+  TL++TPR  +LL++EGF+P YGARPLRRA++KL+EDK++   L    E D    VD+
Sbjct:  513 LHSRIIGQEQAVSAVSRAIRRARVGLRNPNRPIASFMFSGPTGVGKTELTKALALYFFGAEDSMVRLDMSEYMERHTVAKLIGSPPGYVGYSEGGQLTEAVRRKPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDSKGRTIDFKNTMIILTSNVGAKVIEQSTTSGGGLGFDSPDSDNTDSQYSRMAELVNEELKRFFRPEFLNRLDEVIVFQQLTKQDLSQIADIMLAQLCARTQ-EQQFTLNITPRAKDLLIDEGFDPVYGARPLRRAIMKLLEDKLANTVLSEVIEPDSLVLVDV 810
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BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: U7Q7F7_9CYAN (Sigma-54 interaction domain protein n=2 Tax=Oscillatoriales TaxID=1150 RepID=U7Q7F7_9CYAN)

HSP 1 Score: 364 bits (934), Expect = 3.290e-123
Identity = 188/300 (62.67%), Postives = 234/300 (78.00%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQK-TKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDDDAVDI 897
            L  R +GQ+EAV AV+RA+RRARVG++N  RPIASF FSGPTGVGKTELT        G+E++M+RLDMSEFMERHTV+KLIGSPPGY+GYNEGGQLTEAVRR+PYTVVLFDE+EKAHPDVFN+LLQILEDGRLTD+KGR +DFKNT++IMTSN+GSK I+       G G G E ++ +   +Y ++ N V E LK +F+PEFLNR+DEIIVF QLTK  + EIA IM+N++  R+  EK I L +T R  E LVEEG+NP+YGARPLRRA+++L+ED ++ E L  +    D   VD+
Sbjct:    5 LHQRLIGQEEAVKAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALATYFFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYNEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMLLQILEDGRLTDAKGRTVDFKNTLIIMTSNIGSKVIE-----KGGGGLGFEFSENESDAQYHRIRNLVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVKEIAVIMLNEVFRRLT-EKGIKLEITDRFNERLVEEGYNPSYGARPLRRAIMRLLEDSLAEEILSGRIGEGDTAVVDV 298
[Close]
BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Match: B7T203_VAULI (Caseinolytic-like Clp protease n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T203_VAULI)

HSP 1 Score: 379 bits (974), Expect = 2.090e-122
Identity = 189/291 (64.95%), Postives = 238/291 (81.79%), Query Frame = 1 
Query:    1 LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELTXXXXXXXXGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILIMTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFKPEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRMMELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNEN 873
            L  R VGQ +AV+AV+RA+RRARVG+RN  RPIASF F+GPTGVGKTELT        G+EDSM+RLDMSE+ME+HTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTV+LFDEVEK HPD+FNLLLQILEDGRLTDSKGRVI+FKNTI+IMTSNLGS AI+      + +GF     + ++T+Y+ LCN V E LK FF+PEFLNRIDE+IVF+QLTK  I +IA+IM+NDL++R +++K + L ++ ++   L+EEG+NP YGARPLRRA+++L+ED ++ ++L    E+
Sbjct:  537 LHQRVVGQSQAVTAVSRAIRRARVGLRNPNRPIASFLFAGPTGVGKTELTKALASYFFGSEDSMIRLDMSEYMEKHTVAKLIGSPPGYIGYNEGGQLTEAVRRKPYTVILFDEVEKGHPDIFNLLLQILEDGRLTDSKGRVINFKNTIIIMTSNLGSSAIEQQSRLEEDLGFDAI-TNIEETRYSMLCNLVNEELKEFFRPEFLNRIDEMIVFQQLTKDEIEDIAKIMINDLVKRSEQQK-LELEVSDKVKNKLIEEGYNPAYGARPLRRAVMRLIEDNIASKFLEESPED 825
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61996.13929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J7B8_ECTSI1.320e-18596.33ATP-dependent Clp protease ATP-binding subunit clp... [more]
A0A0R6M4R6_UNDPI5.670e-17191.47ATP-dependent clp protease ATP-binding subunit n=6... [more]
A0A8F0F755_9PHAE4.330e-16586.84ATP-dependent clp protease ATP-binding subunit n=1... [more]
A0A8E6D4W2_9PHAE6.290e-16586.14Clp protease ATP binding subunit n=1 Tax=Ishige ok... [more]
A0A2I4Q2E7_9PHAE3.380e-16384.84ATP-dependent clp protease ATP-binding subunit n=1... [more]
A0A7S6ZPD9_9STRA9.660e-12769.12ClpC n=1 Tax=Schizocladia ischiensis TaxID=196139 ... [more]
C6KJ41_9STRA1.540e-12568.07ATP-dependent clp protease ATP-binding subunit n=1... [more]
C6KIT1_AURAN1.300e-12364.55ATP-dependent clp protease ATP-binding subunit n=3... [more]
U7Q7F7_9CYAN3.290e-12362.67Sigma-54 interaction domain protein n=2 Tax=Oscill... [more]
B7T203_VAULI2.090e-12264.95Caseinolytic-like Clp protease n=1 Tax=Vaucheria l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61996contigH-paniculata_contig61996:3..902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score544.3
Seed ortholog evalue3.6e-152
Seed eggNOG ortholog2880.D1J7B8
Preferred nameclpC
KEGG koko:K03696
KEGG Pathwayko01100,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006508,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0009507,GO:0009526,GO:0009528,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009658,GO:0009706,GO:0009719,GO:0009725,GO:0009735,GO:0009889,GO:0009941,GO:0009987,GO:0010033,GO:0010380,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019222,GO:0019538,GO:0019866,GO:0022607,GO:0030312,GO:0031090,GO:0031323,GO:0031326,GO:0031897,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034214,GO:0034357,GO:0034613,GO:0042170,GO:0042221,GO:0042623,GO:0042651,GO:0042802,GO:0042803,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045037,GO:0045184,GO:0046907,GO:0046983,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051193,GO:0051234,GO:0051259,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0065002,GO:0065003,GO:0065007,GO:0070011,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072596,GO:0072598,GO:0090056,GO:0098796,GO:0140096,GO:1901401,GO:1901463,GO:1901564
EggNOG free text desc.ATP binding
EggNOG OGsCOG0542@1,KOG1051@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons1
Model size900
Cds size900
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930702.2010098-CDS-H-paniculata_contig61996:2..9021622930702.2010098-CDS-H-paniculata_contig61996:2..902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61996 3..902 -
1691481413.3829234-CDS-H-paniculata_contig61996:2..9021691481413.3829234-CDS-H-paniculata_contig61996:2..902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61996 3..902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61996.13929.1prot_H-paniculata_contig61996.13929.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61996 3..902 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61996.13929.1

>prot_H-paniculata_contig61996.13929.1 ID=prot_H-paniculata_contig61996.13929.1|Name=mRNA_H-paniculata_contig61996.13929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=300bp
LPNRGVGQKEAVSAVARAVRRARVGMRNMKRPIASFFFSGPTGVGKTELT
KTLASFFFGAEDSMVRLDMSEFMERHTVAKLIGSPPGYIGYNEGGQLTEA
VRRKPYTVVLFDEVEKAHPDVFNLLLQILEDGRLTDSKGRVIDFKNTILI
MTSNLGSKAIQDNDLSSQGMGFGGEKADTQKTKYAQLCNTVGESLKAFFK
PEFLNRIDEIIVFEQLTKSNITEIAEIMVNDLIERVKKEKDITLSLTPRM
MELLVEEGFNPTYGARPLRRALVKLVEDKVSLEYLRYKNENDDDDAVDIL
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mRNA from alignment at H-paniculata_contig61996:3..902-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61996.13929.1 ID=mRNA_H-paniculata_contig61996.13929.1|Name=mRNA_H-paniculata_contig61996.13929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=900bp|location=Sequence derived from alignment at H-paniculata_contig61996:3..902- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCTAATAGAGGTGTTGGCCAAAAAGAAGCTGTTTCCGCTGTAGCCCG
AGCTGTCCGCCGAGCTAGAGTTGGAATGAGAAATATGAAACGACCAATTG
CTAGTTTCTTCTTCTCTGGTCCTACGGGGGTTGGTAAAACTGAATTAACT
AAGACTCTAGCTTCATTCTTCTTTGGGGCAGAGGATTCGATGGTCCGTTT
AGATATGTCTGAATTTATGGAGCGTCACACAGTAGCCAAATTAATTGGTT
CCCCACCAGGTTATATCGGTTATAATGAAGGTGGACAATTAACAGAAGCT
GTTCGACGCAAACCATATACTGTTGTGCTTTTTGATGAAGTAGAAAAAGC
TCATCCTGATGTTTTTAATTTATTACTTCAAATACTTGAAGATGGGCGTT
TAACAGATTCTAAGGGTCGGGTTATTGATTTTAAAAATACAATTTTAATC
ATGACTTCAAATTTGGGTTCTAAAGCAATTCAAGATAATGATCTTTCTTC
CCAAGGAATGGGCTTTGGGGGAGAAAAAGCTGATACACAAAAAACAAAAT
ACGCTCAATTATGTAATACTGTTGGCGAAAGTCTCAAAGCATTCTTTAAA
CCAGAATTTTTAAACCGTATTGATGAGATAATTGTTTTTGAACAGCTTAC
TAAATCAAATATTACGGAAATCGCTGAAATTATGGTCAATGATTTAATCG
AAAGAGTAAAAAAAGAGAAAGATATAACACTATCATTAACACCACGTATG
ATGGAACTACTTGTTGAAGAAGGCTTTAACCCTACGTATGGTGCAAGACC
GCTACGTCGTGCTCTTGTAAAATTGGTTGAAGATAAAGTTTCTCTTGAAT
ATTTACGTTATAAAAATGAAAATGATGATGATGATGCCGTAGATATTTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig61996:3..902-

>mRNA_H-paniculata_contig61996.13929.1 ID=mRNA_H-paniculata_contig61996.13929.1|Name=mRNA_H-paniculata_contig61996.13929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1800bp|location=Sequence derived from alignment at H-paniculata_contig61996:3..902- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACCTAATAGAGGTGTTGGCCAAAAAGAAGCTGTTTCCGCTGTAGCCCG
AGCTGTCCGCCGAGCTAGAGTTGGAATGAGAAATATGAAACGACCAATTG
CTAGTTTCTTCTTCTCTGGTCCTACGGGGGTTGGTAAAACTGAATTAACT
AAGACTCTAGCTTCATTCTTCTTTGGGGCAGAGGATTCGATGGTCCGTTT
AGATATGTCTGAATTTATGGAGCGTCACACAGTAGCCAAATTAATTGGTT
CCCCACCAGGTTATATCGGTTATAATGAAGGTGGACAATTAACAGAAGCT
GTTCGACGCAAACCATATACTGTTGTGCTTTTTGATGAAGTAGAAAAAGC
TCATCCTGATGTTTTTAATTTATTACTTCAAATACTTGAAGATGGGCGTT
TAACAGATTCTAAGGGTCGGGTTATTGATTTTAAAAATACAATTTTAATC
ATGACTTCAAATTTGGGTTCTAAAGCAATTCAAGATAATGATCTTTCTTC
CCAAGGAATGGGCTTTGGGGGAGAAAAAGCTGATACACAAAAAACAAAAT
ACGCTCAATTATGTAATACTGTTGGCGAAAGTCTCAAAGCATTCTTTAAA
CCAGAATTTTTAAACCGTATTGATGAGATAATTGTTTTTGAACAGCTTAC
TAAATCAAATATTACGGAAATCGCTGAAATTATGGTCAATGATTTAATCG
AAAGAGTAAAAAAAGAGAAAGATATAACACTATCATTAACACCACGTATG
ATGGAACTACTTGTTGAAGAAGGCTTTAACCCTACGTATGGTGCAAGACC
GCTACGTCGTGCTCTTGTAAAATTGGTTGAAGATAAAGTTTCTCTTGAAT
ATTTACGTTATAAAAATGAAAATGATGATGATGATGCCGTAGATATTTTA
TTACCTAATAGAGGTGTTGGCCAAAAAGAAGCTGTTTCCGCTGTAGCCCG
AGCTGTCCGCCGAGCTAGAGTTGGAATGAGAAATATGAAACGACCAATTG
CTAGTTTCTTCTTCTCTGGTCCTACGGGGGTTGGTAAAACTGAATTAACT
AAGACTCTAGCTTCATTCTTCTTTGGGGCAGAGGATTCGATGGTCCGTTT
AGATATGTCTGAATTTATGGAGCGTCACACAGTAGCCAAATTAATTGGTT
CCCCACCAGGTTATATCGGTTATAATGAAGGTGGACAATTAACAGAAGCT
GTTCGACGCAAACCATATACTGTTGTGCTTTTTGATGAAGTAGAAAAAGC
TCATCCTGATGTTTTTAATTTATTACTTCAAATACTTGAAGATGGGCGTT
TAACAGATTCTAAGGGTCGGGTTATTGATTTTAAAAATACAATTTTAATC
ATGACTTCAAATTTGGGTTCTAAAGCAATTCAAGATAATGATCTTTCTTC
CCAAGGAATGGGCTTTGGGGGAGAAAAAGCTGATACACAAAAAACAAAAT
ACGCTCAATTATGTAATACTGTTGGCGAAAGTCTCAAAGCATTCTTTAAA
CCAGAATTTTTAAACCGTATTGATGAGATAATTGTTTTTGAACAGCTTAC
TAAATCAAATATTACGGAAATCGCTGAAATTATGGTCAATGATTTAATCG
AAAGAGTAAAAAAAGAGAAAGATATAACACTATCATTAACACCACGTATG
ATGGAACTACTTGTTGAAGAAGGCTTTAACCCTACGTATGGTGCAAGACC
GCTACGTCGTGCTCTTGTAAAATTGGTTGAAGATAAAGTTTCTCTTGAAT
ATTTACGTTATAAAAATGAAAATGATGATGATGATGCCGTAGATATTTTA
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