mRNA_H-paniculata_contig61972.13927.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61972.13927.1
Unique NamemRNA_H-paniculata_contig61972.13927.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5LLS9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS9_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.580e-14
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKGKLKTKIP---GAKWCSVHNTTTHSDEEC 159
            M    S+IIC+ C +PGH++R CP++K + K K     G KWCS HNTT+HSDEEC
Sbjct:  122 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGGTKWCSKHNTTSHSDEEC 177
[Close]
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 5.070e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKG--KLKTKIPGA-KWCSVHNTTTHSDEEC 159
            M    S+IIC+ C +PGH++R CP++K   K KTK  GA KWCS HNTT+HSDEEC
Sbjct:   99 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 154
[Close]
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.750e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKG--KLKTKIPGA-KWCSVHNTTTHSDEEC 159
            M    S+IIC+ C +PGH++R CP++K   K KTK  GA KWCS HNTT+HSDEEC
Sbjct:  236 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 291
[Close]
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.750e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKG--KLKTKIPGA-KWCSVHNTTTHSDEEC 159
            M    S+IIC+ C +PGH++R CP++K   K KTK  GA KWCS HNTT+HSDEEC
Sbjct:   47 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 102
[Close]
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5JQY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQY8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.170e-14
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKGK----LKTKIPGA-KWCSVHNTTTHSDEEC 159
            M    S  IC+ CN+PGHV+R CP L+ K     KTK  GA KWCSVHNTTTHSDEEC
Sbjct:   26 MATKTSGPICFECNEPGHVRRNCPNLQRKGHMARKTKPAGATKWCSVHNTTTHSDEEC 83
[Close]
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.250e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKG--KLKTKIPGA-KWCSVHNTTTHSDEEC 159
            M    S+IIC+ C +PGH++R CP++K   K KTK  GA KWCS HNTT+HSDEEC
Sbjct:   99 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 154
[Close]
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.280e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKG--KLKTKIPGA-KWCSVHNTTTHSDEEC 159
            M    S+IIC+ C +PGH++R CP++K   K KTK  GA KWCS HNTT+HSDEEC
Sbjct:  254 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 309
[Close]
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.290e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKG--KLKTKIPGA-KWCSVHNTTTHSDEEC 159
            M    S+IIC+ C +PGH++R CP++K   K KTK  GA KWCS HNTT+HSDEEC
Sbjct:   29 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 84
[Close]
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5K9Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y0_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.300e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKG--KLKTKIPGA-KWCSVHNTTTHSDEEC 159
            M    S+IIC+ C +PGH++R CP++K   K KTK  GA KWCS HNTT+HSDEEC
Sbjct:  239 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 294
[Close]
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 8.300e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 MTAIVSEIICYYCNKPGHVKRKCPQLKG--KLKTKIPGA-KWCSVHNTTTHSDEEC 159
            M    S+IIC+ C +PGH++R CP++K   K KTK  GA KWCS HNTT+HSDEEC
Sbjct:  247 MATTASDIICHRCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEEC 302
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61972.13927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LLS9_9PHAE3.580e-1453.57CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZM5_9PHAE5.070e-1458.93CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF66_9PHAE6.750e-1458.93CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KP59_9PHAE7.750e-1458.93CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQY8_9PHAE8.170e-1462.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ53_9PHAE8.250e-1458.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L580_9PHAE8.280e-1458.93CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KMG5_9PHAE8.290e-1458.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9Y0_9PHAE8.300e-1458.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5J8P7_9PHAE8.300e-1458.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61972contigH-paniculata_contig61972:295..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930702.0933251-CDS-H-paniculata_contig61972:294..4531622930702.0933251-CDS-H-paniculata_contig61972:294..453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61972 295..453 +
1691481413.3587916-CDS-H-paniculata_contig61972:294..4531691481413.3587916-CDS-H-paniculata_contig61972:294..453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61972 295..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61972.13927.1prot_H-paniculata_contig61972.13927.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61972 295..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61972.13927.1

>prot_H-paniculata_contig61972.13927.1 ID=prot_H-paniculata_contig61972.13927.1|Name=mRNA_H-paniculata_contig61972.13927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MTAIVSEIICYYCNKPGHVKRKCPQLKGKLKTKIPGAKWCSVHNTTTHSD
EEC
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mRNA from alignment at H-paniculata_contig61972:295..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61972.13927.1 ID=mRNA_H-paniculata_contig61972.13927.1|Name=mRNA_H-paniculata_contig61972.13927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig61972:295..453+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCCATCGTAAGCGAAATCATCTGCTACTACTGCAACAAACCTGG
ACACGTCAAGAGGAAGTGCCCTCAGCTGAAAGGAAAACTGAAGACCAAAA
TACCGGGAGCCAAGTGGTGCTCGGTACATAATACCACGACCCACTCCGAC
GAGGAATGC
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Coding sequence (CDS) from alignment at H-paniculata_contig61972:295..453+

>mRNA_H-paniculata_contig61972.13927.1 ID=mRNA_H-paniculata_contig61972.13927.1|Name=mRNA_H-paniculata_contig61972.13927.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig61972:295..453+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGCCATCGTAAGCGAAATCATCTGCTACTACTGCAACAAACCTGG
ACACGTCAAGAGGAAGTGCCCTCAGCTGAAAGGAAAACTGAAGACCAAAA
TACCGGGAGCCAAGTGGTGCTCGGTACATAATACCACGACCCACTCCGAC
GAGGAATGCATGACTGCCATCGTAAGCGAAATCATCTGCTACTACTGCAA
CAAACCTGGACACGTCAAGAGGAAGTGCCCTCAGCTGAAAGGAAAACTGA
AGACCAAAATACCGGGAGCCAAGTGGTGCTCGGTACATAATACCACGACC
CACTCCGACGAGGAATGC
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