mRNA_H-paniculata_contig61954.13925.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61954.13925.1
Unique NamemRNA_H-paniculata_contig61954.13925.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61954.13925.1 vs. uniprot
Match: D7FXC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC9_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 8.380e-16
Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 RKRVSPEETASVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGESVTTAIYFNARQQLDPPPHLVNMIFRGFEEQREIL 252
            R RV P ET +VT +KD + G   T +LVYRPLS  SALSQSG+V PGES  TA Y+N RQ +D P  LVN +   F + R  L
Sbjct:  143 RNRVPPGETQAVTRMKDINGGALGTTTLVYRPLSAQSALSQSGAVGPGESSATAAYYNPRQHVDVPDGLVNHVLPRFMDVRRQL 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61954.13925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXC9_ECTSI8.380e-1653.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61954contigH-paniculata_contig61954:1..252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930701.9888623-CDS-H-paniculata_contig61954:0..2521622930701.9888623-CDS-H-paniculata_contig61954:0..252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61954 1..252 -
1691481413.3237133-CDS-H-paniculata_contig61954:0..2521691481413.3237133-CDS-H-paniculata_contig61954:0..252Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61954 1..252 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61954.13925.1prot_H-paniculata_contig61954.13925.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61954 1..252 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61954.13925.1

>prot_H-paniculata_contig61954.13925.1 ID=prot_H-paniculata_contig61954.13925.1|Name=mRNA_H-paniculata_contig61954.13925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
RKRVSPEETASVTHVKDGSHGPFSTCSLVYRPLSIASALSQSGSVLPGES
VTTAIYFNARQQLDPPPHLVNMIFRGFEEQREIL
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mRNA from alignment at H-paniculata_contig61954:1..252-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61954.13925.1 ID=mRNA_H-paniculata_contig61954.13925.1|Name=mRNA_H-paniculata_contig61954.13925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at H-paniculata_contig61954:1..252- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAAAGGGTCTCTCCTGAAGAAACGGCAAGCGTAACCCATGTGAAGGA
TGGGTCACATGGACCGTTCAGCACCTGCTCACTTGTCTACCGACCACTTT
CCATCGCCAGCGCTCTATCTCAGTCGGGGTCCGTGCTTCCGGGAGAAAGT
GTGACGACAGCGATCTACTTTAATGCGCGTCAACAGCTCGATCCTCCACC
TCACTTGGTCAACATGATATTTAGGGGATTTGAGGAGCAGCGCGAAATAC
TA
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Coding sequence (CDS) from alignment at H-paniculata_contig61954:1..252-

>mRNA_H-paniculata_contig61954.13925.1 ID=mRNA_H-paniculata_contig61954.13925.1|Name=mRNA_H-paniculata_contig61954.13925.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig61954:1..252- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAAAAGGGTCTCTCCTGAAGAAACGGCAAGCGTAACCCATGTGAAGGA
TGGGTCACATGGACCGTTCAGCACCTGCTCACTTGTCTACCGACCACTTT
CCATCGCCAGCGCTCTATCTCAGTCGGGGTCCGTGCTTCCGGGAGAAAGT
GTGACGACAGCGATCTACTTTAATGCGCGTCAACAGCTCGATCCTCCACC
TCACTTGGTCAACATGATATTTAGGGGATTTGAGGAGCAGCGCGAAATAC
TAAGAAAAAGGGTCTCTCCTGAAGAAACGGCAAGCGTAACCCATGTGAAG
GATGGGTCACATGGACCGTTCAGCACCTGCTCACTTGTCTACCGACCACT
TTCCATCGCCAGCGCTCTATCTCAGTCGGGGTCCGTGCTTCCGGGAGAAA
GTGTGACGACAGCGATCTACTTTAATGCGCGTCAACAGCTCGATCCTCCA
CCTCACTTGGTCAACATGATATTTAGGGGATTTGAGGAGCAGCGCGAAAT
ACTA
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