mRNA_H-paniculata_contig61902.13919.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig61902.13919.1
Unique NamemRNA_H-paniculata_contig61902.13919.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Match: D7FT37_ECTSI (CDP-alcohol phosphatidyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT37_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.300e-10
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:   13 SILGGFLDPLADKIMVTTVALALGQQGIMPTPLV 114
            S+LGGFLDPLADK+MVTTVALALGQQGI+PT LV
Sbjct:   64 SVLGGFLDPLADKVMVTTVALALGQQGIVPTALV 97
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BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Match: A0A6H5KUV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV6_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.800e-9
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:   13 SILGGFLDPLADKIMVTTVALALGQQGIMPTPLV 114
            S+LGGFLDPLADK+MVTTVALALGQQGI+P  LV
Sbjct:  207 SVLGGFLDPLADKVMVTTVALALGQQGIVPAALV 240
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BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Match: A0A835ZD07_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD07_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-7
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 MNFQSILGGFLDPLADKIMVTTVALALGQQGIMPTPLV 114
            +N +++LGG LDPLADK+MV TV++ALG QG++P PLV
Sbjct:  118 LNQKTVLGGILDPLADKLMVATVSVALGAQGLLPMPLV 155
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BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Match: A0A7S2XPB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPB2_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.190e-6
Identity = 22/37 (59.46%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 NFQSILGGFLDPLADKIMVTTVALALGQQGIMPTPLV 114
            N +++LG +LDPLADKIMV T+AL+L  Q ++P PLV
Sbjct:   24 NMKTVLGTYLDPLADKIMVNTLALSLCYQDLLPMPLV 60
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BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Match: A0A4D9CZ77_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ77_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.250e-5
Identity = 22/38 (57.89%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 NFQSILGGFLDPLADKIMVTTVALALGQQGIMPTPLVV 117
            N  S+LG FLDPLADK++V  +A+ L  QG++PTPL+V
Sbjct:   53 NQSSVLGSFLDPLADKVLVAALAVPLAFQGLIPTPLLV 90
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BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Match: W7TR40_9STRA (Cdp-diacylglycerol--glycerol-3-phosphate 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TR40_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.180e-5
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 NFQSILGGFLDPLADKIMVTTVALALGQQGIMPTPLVV 117
            N  S+LG FLDPLADK++V  +A+ L  QG +PTPL+V
Sbjct:  183 NQSSVLGSFLDPLADKVLVAALAVPLALQGFIPTPLLV 220
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BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Match: A0A2I0JXG3_PUNGR (cardiolipin synthase (CMP-forming), mitochondrial n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0JXG3_PUNGR)

HSP 1 Score: 48.1 bits (113), Expect = 2.980e-5
Identity = 21/38 (55.26%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 MNFQSILGGFLDPLADKIMVTTVALALGQQGIMPTPLV 114
            MN  S++G +LDPLADK+++  VALA+ QQ ++PT LV
Sbjct:  196 MNINSVVGSYLDPLADKVLIGCVALAMVQQDLLPTELV 233
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BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Match: A0A067CS69_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CS69_SAPPC)

HSP 1 Score: 47.8 bits (112), Expect = 3.790e-5
Identity = 20/39 (51.28%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    1 MNFQSILGGFLDPLADKIMVTTVALALGQQGIMPTPLVV 117
            +N ++I+G FLDPLADK+MV T+ +++G  G++P PL+V
Sbjct:  113 LNQKTIVGTFLDPLADKVMVGTLCVSMGYAGLLPLPLIV 151
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BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Match: A0A166HXP3_9AGAM (Uncharacterized protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166HXP3_9AGAM)

HSP 1 Score: 47.4 bits (111), Expect = 5.420e-5
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    4 NFQSILGGFLDPLADKIMVTTVALALGQQGIMPTPLVV 117
            N QS+LG  LDP ADK +VTT+A+ L  QG++P PL V
Sbjct:  129 NMQSVLGTILDPAADKTLVTTLAVTLTMQGLIPLPLAV 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig61902.13919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FT37_ECTSI2.300e-1088.24CDP-alcohol phosphatidyltransferase n=1 Tax=Ectoca... [more]
A0A6H5KUV6_9PHAE1.800e-985.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD07_9STRA1.450e-763.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XPB2_9STRA7.190e-659.46Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A4D9CZ77_9STRA1.250e-557.89Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TR40_9STRA2.180e-557.89Cdp-diacylglycerol--glycerol-3-phosphate 3 n=1 Tax... [more]
A0A2I0JXG3_PUNGR2.980e-555.26cardiolipin synthase (CMP-forming), mitochondrial ... [more]
A0A067CS69_SAPPC3.790e-551.28Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A166HXP3_9AGAM5.420e-557.89Uncharacterized protein n=1 Tax=Fibularhizoctonia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig61902contigH-paniculata_contig61902:594..710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog2880.D7FT37
Preferred nameCRLS1
KEGG rclassRC00002,RC00017
KEGG koko:K02950,ko:K08744,ko:K10737
KEGG ReactionR02030
KEGG Pathwayko00564,ko01100,ko03010,map00564,map01100,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000002,GO:0001101,GO:0003674,GO:0003824,GO:0003841,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006163,GO:0006164,GO:0006605,GO:0006612,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006873,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0008104,GO:0008150,GO:0008152,GO:0008374,GO:0008610,GO:0008654,GO:0008808,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016780,GO:0016787,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019866,GO:0030145,GO:0030572,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0032049,GO:0033036,GO:0033993,GO:0034613,GO:0034641,GO:0034654,GO:0036148,GO:0042127,GO:0042171,GO:0042221,GO:0042391,GO:0042493,GO:0042592,GO:0042886,GO:0043167,GO:0043169,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043337,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045184,GO:0046034,GO:0046390,GO:0046471,GO:0046474,GO:0046483,GO:0046486,GO:0046683,GO:0046872,GO:0046907,GO:0046914,GO:0047144,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051881,GO:0055082,GO:0055086,GO:0061024,GO:0065007,GO:0065008,GO:0070727,GO:0071617,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072521,GO:0072522,GO:0072657,GO:0090150,GO:0090407,GO:0097066,GO:0097068,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901700,GO:1904386,GO:1905711
EggNOG free text desc.cardiolipin synthase activity
EggNOG OGsCOG0558@1,KOG1617@2759
Ec32 ortholog descriptionCDP-alcohol phosphatidyltransferase
Ec32 orthologEc-04_002700.1
EC2.7.8.41,3.6.4.12
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03032
Exons1
Model size117
Cds size117
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930701.0600007-CDS-H-paniculata_contig61902:593..7101622930701.0600007-CDS-H-paniculata_contig61902:593..710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61902 594..710 -
1691481412.9645658-CDS-H-paniculata_contig61902:593..7101691481412.9645658-CDS-H-paniculata_contig61902:593..710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig61902 594..710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig61902.13919.1prot_H-paniculata_contig61902.13919.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig61902 594..710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig61902.13919.1

>prot_H-paniculata_contig61902.13919.1 ID=prot_H-paniculata_contig61902.13919.1|Name=mRNA_H-paniculata_contig61902.13919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=39bp
MNFQSILGGFLDPLADKIMVTTVALALGQQGIMPTPLVV
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mRNA from alignment at H-paniculata_contig61902:594..710-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig61902.13919.1 ID=mRNA_H-paniculata_contig61902.13919.1|Name=mRNA_H-paniculata_contig61902.13919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at H-paniculata_contig61902:594..710- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATTTTCAGTCCATTCTCGGCGGCTTCTTGGATCCGCTGGCGGACAA
GATCATGGTCACTACGGTTGCCTTGGCTCTGGGTCAACAGGGAATCATGC
CTACACCGCTTGTGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig61902:594..710-

>mRNA_H-paniculata_contig61902.13919.1 ID=mRNA_H-paniculata_contig61902.13919.1|Name=mRNA_H-paniculata_contig61902.13919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at H-paniculata_contig61902:594..710- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATTTTCAGTCCATTCTCGGCGGCTTCTTGGATCCGCTGGCGGACAA
GATCATGGTCACTACGGTTGCCTTGGCTCTGGGTCAACAGGGAATCATGC
CTACACCGCTTGTGGTGATGAATTTTCAGTCCATTCTCGGCGGCTTCTTG
GATCCGCTGGCGGACAAGATCATGGTCACTACGGTTGCCTTGGCTCTGGG
TCAACAGGGAATCATGCCTACACCGCTTGTGGTG
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