mRNA_H-paniculata_contig619.13917.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig619.13917.1
Unique NamemRNA_H-paniculata_contig619.13917.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig619.13917.1 vs. uniprot
Match: D7G071_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G071_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 3.250e-23
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 GSSLLRSAVDCGALTIDNTFCLTGQCEACMAEIDGEVVLSCMVPVPDDGR 150
            GSSLL+SA +CGA+ IDNTFCLTGQCEACMAE+DGEVVLSCMVPVP DGR
Sbjct:  144 GSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGR 193
[Close]
BLAST of mRNA_H-paniculata_contig619.13917.1 vs. uniprot
Match: A0A388KU81_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KU81_CHABU)

HSP 1 Score: 62.0 bits (149), Expect = 1.560e-11
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 GSSLLRSAVDCGALTIDNTFCLTGQCEACMAEID-GEVVLSCMVPVP 138
            GS++L++AV+ GALTIDN FCLTGQC+ C  E++ GE++ SCM  +P
Sbjct:    4 GSNILKAAVEAGALTIDNRFCLTGQCDVCCVEMEHGEIIRSCMHAIP 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig619.13917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G071_ECTSI3.250e-2386.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A388KU81_CHABU1.560e-1157.45Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig619contigH-paniculata_contig619:3672..3824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D7G071
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2F1MW@1,2T2MF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930700.4669285-CDS-H-paniculata_contig619:3671..38241622930700.4669285-CDS-H-paniculata_contig619:3671..3824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig619 3672..3824 +
1691481412.5975208-CDS-H-paniculata_contig619:3671..38241691481412.5975208-CDS-H-paniculata_contig619:3671..3824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig619 3672..3824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig619.13917.1prot_H-paniculata_contig619.13917.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig619 3672..3824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig619.13917.1

>prot_H-paniculata_contig619.13917.1 ID=prot_H-paniculata_contig619.13917.1|Name=mRNA_H-paniculata_contig619.13917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
GSSLLRSAVDCGALTIDNTFCLTGQCEACMAEIDGEVVLSCMVPVPDDGR
*
back to top

mRNA from alignment at H-paniculata_contig619:3672..3824+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig619.13917.1 ID=mRNA_H-paniculata_contig619.13917.1|Name=mRNA_H-paniculata_contig619.13917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig619:3672..3824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCTAGTCTATTGCGGAGCGCCGTCGATTGTGGTGCGCTCACGATAGA
CAACACTTTCTGTCTCACCGGCCAATGCGAAGCTTGCATGGCGGAAATTG
ACGGGGAGGTGGTACTCTCTTGCATGGTGCCAGTTCCTGACGATGGGAGG
TAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig619:3672..3824+

>mRNA_H-paniculata_contig619.13917.1 ID=mRNA_H-paniculata_contig619.13917.1|Name=mRNA_H-paniculata_contig619.13917.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig619:3672..3824+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCTAGTCTATTGCGGAGCGCCGTCGATTGTGGTGCGCTCACGATAGA
CAACACTTTCTGTCTCACCGGCCAATGCGAAGCTTGCATGGCGGAAATTG
ACGGGGAGGTGGTACTCTCTTGCATGGTGCCAGTTCCTGACGATGGGAGG
TAAGGTTCTAGTCTATTGCGGAGCGCCGTCGATTGTGGTGCGCTCACGAT
AGACAACACTTTCTGTCTCACCGGCCAATGCGAAGCTTGCATGGCGGAAA
TTGACGGGGAGGTGGTACTCTCTTGCATGGTGCCAGTTCCTGACGATGGG
AGGTAA
back to top