mRNA_H-paniculata_contig6187.13915.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6187.13915.1
Unique NamemRNA_H-paniculata_contig6187.13915.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6187.13915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6187contigH-paniculata_contig6187:3653..5115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size177
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930700.2787092-CDS-H-paniculata_contig6187:3652..37241622930700.2787092-CDS-H-paniculata_contig6187:3652..3724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6187 3653..3724 +
1691481412.5280511-CDS-H-paniculata_contig6187:3652..37241691481412.5280511-CDS-H-paniculata_contig6187:3652..3724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6187 3653..3724 +
1622930700.2980683-CDS-H-paniculata_contig6187:5011..51131622930700.2980683-CDS-H-paniculata_contig6187:5011..5113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6187 5012..5113 +
1691481412.5389519-CDS-H-paniculata_contig6187:5011..51131691481412.5389519-CDS-H-paniculata_contig6187:5011..5113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6187 5012..5113 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6187.13915.1prot_H-paniculata_contig6187.13915.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6187 3653..5113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6187.13915.1

>prot_H-paniculata_contig6187.13915.1 ID=prot_H-paniculata_contig6187.13915.1|Name=mRNA_H-paniculata_contig6187.13915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
ASWGGPIGHAENVLLRALWHTHPKNVSRPSDGHRMVLHGRTGTPSFCRRH
NHRESVSC
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mRNA from alignment at H-paniculata_contig6187:3653..5115+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6187.13915.1 ID=mRNA_H-paniculata_contig6187.13915.1|Name=mRNA_H-paniculata_contig6187.13915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1463bp|location=Sequence derived from alignment at H-paniculata_contig6187:3653..5115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGTTGGGGTGGTCCGATTGGCCATGCTGAGAACGTGCTACTCCGAGC
GTTATGGCATACACATCCCAAGGTATGTTGGGGCTGTTAGCGATGCATCA
TACTCAGGGTAAAGTAGCTGGCGGCCACCCTATGAATGTTATTTTATTTT
AGTTTTGAAATACTGCACAACTCAATTGATCATGGCGACTTCGGCACTGG
TGAAGAGGATTTCGTATCCCTGTTGAACATTCCGTGCAAGAGTCTTAGAG
TAATTTTTCAAGACGTACTGAACAGTTATTTGTTACGTTATAGTGGGGGT
ACTGTATGATGCTCAACCGCACCGCCACGTTTAGCCGGAGGTCCCTCAGA
CCTATGTGCAGCAGAAGTGGTAAAAGATAAACGATCTGATGTAGGGCACG
GCGGGCTTGCTCCAGCTCGTGTAATACTCAATACTTGCCATCCTCCACTA
AACGTACACATCCTTCATATCATGATGCTACCCCAGTATCGTCGCATTCA
TCTATGTTGACTGTACCCGGAATCTCCAGTACGAACCATGATAAGTTACT
GTTGTGTGTTGCAAGTTATTGCTGTGTCTTCAACCCCCTTTGGCGTCTCA
TGGCAATTTCTACGGTTGAGTTATTTTCGTTTGGTGGGTACATGTAGTGG
AGGATGCCTTCACAGTTCTTCAAGAATAGAATGGCATGAAAAATTAATGT
GGTGTATGACGTTTGTCTCGTGGTATCAACCAAGAGACCATCCATAGTTT
TTACCCACAAGGTTTCCGGATTGGTACATTAGCTCTCCCGATTTAGGATT
TTGATATACACGCACCCAGGACATCGATTCGATTTGTGCTCTAGGGGCTG
TCGGTTCATCGGGCAATCACATTGGTCCTTCTTATTTTCGGAGTGCAAAT
ATAATAGTCAATTAAACATCCTTCTTCAGCGCGGAACGAAAGGTCTATTT
CGCTGTAACTATGTAAATCCCGATTCACCAAACAGGACTAGGATTCGCGA
CGGCGGATCAACAAAACTGTTACACCACTCTACACGACCCAACTTGAAAC
CACATGTTGAGAAAATCAAGCTAATAACATTCTTACGTCATTCTGAAATT
GCCAAAAAGGTTTTTGCTAAATTATGCCCTCCTACTAATTCCTACATAAT
AACAACGAACATTTAATGTACGAACTCGCATTTCTCGTAAGACTGTATAT
GAACCGCGAGGCTCACGCGGAACAGGCGTTTCCCAAGTACTGTTGTGTAC
TGTATTGGTGCATGACACTTCATGATCGAACCGTGAATCCCACAAGTTTT
GCATCACCATCTGCTTCCGCCCCGGCGGCCGACGTTTTCCGCCGTCATGT
GTCCCCAAGAATGTTTCACGACCTTCTGACGGACATCGAATGGTCCTTCA
TGGGAGGACAGGCACCCCCTCATTCTGCCGCCGCCACAACCACAGGGAAA
GCGTTTCCTGTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig6187:3653..5115+

>mRNA_H-paniculata_contig6187.13915.1 ID=mRNA_H-paniculata_contig6187.13915.1|Name=mRNA_H-paniculata_contig6187.13915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig6187:3653..5115+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGAGTTGGGGTGGTCCGATTGGCCATGCTGAGAACGTGCTACTCCGAGC
GTTATGGCATACACATCCCAAGGCGAGTTGGGGTGGTCCGATTGGCCATG
CTGAGAACGTGCTACTCCGAGCGTTATGGCATACACATCCCAAGAATGTT
TCACGACCTTCTGACGGACATCGAATGGTCCTTCATGGGAGGACAGGCAC
CCCCTCATTCTGCCGCCGCCACAACCACAGGGAAAGCGTTTCCTGTAATG
TTTCACGACCTTCTGACGGACATCGAATGGTCCTTCATGGGAGGACAGGC
ACCCCCTCATTCTGCCGCCGCCACAACCACAGGGAAAGCGTTTCCTGT
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