mRNA_H-paniculata_contig6185.13912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6185.13912.1
Unique NamemRNA_H-paniculata_contig6185.13912.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6185.13912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6185contigH-paniculata_contig6185:1316..7173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1108
Cds size651
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6185.13912.1prot_H-paniculata_contig6185.13912.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6185 1668..7068 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930699.7600698-UTR-H-paniculata_contig6185:1315..16671622930699.7600698-UTR-H-paniculata_contig6185:1315..1667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6185 1316..1667 -
1691481412.2672865-UTR-H-paniculata_contig6185:1315..16671691481412.2672865-UTR-H-paniculata_contig6185:1315..1667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6185 1316..1667 -
1622930699.820336-UTR-H-paniculata_contig6185:7068..71731622930699.820336-UTR-H-paniculata_contig6185:7068..7173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6185 7069..7173 -
1691481412.316576-UTR-H-paniculata_contig6185:7068..71731691481412.316576-UTR-H-paniculata_contig6185:7068..7173Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6185 7069..7173 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930699.7715533-CDS-H-paniculata_contig6185:1667..19131622930699.7715533-CDS-H-paniculata_contig6185:1667..1913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6185 1668..1913 -
1691481412.279283-CDS-H-paniculata_contig6185:1667..19131691481412.279283-CDS-H-paniculata_contig6185:1667..1913Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6185 1668..1913 -
1622930699.7835286-CDS-H-paniculata_contig6185:3813..39911622930699.7835286-CDS-H-paniculata_contig6185:3813..3991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6185 3814..3991 -
1691481412.2910342-CDS-H-paniculata_contig6185:3813..39911691481412.2910342-CDS-H-paniculata_contig6185:3813..3991Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6185 3814..3991 -
1622930699.801218-CDS-H-paniculata_contig6185:6841..70681622930699.801218-CDS-H-paniculata_contig6185:6841..7068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6185 6842..7068 -
1691481412.303257-CDS-H-paniculata_contig6185:6841..70681691481412.303257-CDS-H-paniculata_contig6185:6841..7068Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6185 6842..7068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6185.13912.1

>prot_H-paniculata_contig6185.13912.1 ID=prot_H-paniculata_contig6185.13912.1|Name=mRNA_H-paniculata_contig6185.13912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=217bp
MNAKALAEMKIEPEMTLEDIPEGERGPFLFGLCFASYTNNRRQRLLEELK
TGFSSGSNPRSFALRQDEMDFGQDALSNMMWAGVGNAALGMAGYGIYKTI
RSRPTSRVGLVGMGAVGAGVGLTAGMLYSIKTKIAEMDAGPINPKDRQCD
ELLKFEACANNSLCMDFVQKEGFSRFLNAFETCKKRRDDSSVAEKEGLEL
ALKSEKEALNAVLKSK*
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mRNA from alignment at H-paniculata_contig6185:1316..7173-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6185.13912.1 ID=mRNA_H-paniculata_contig6185.13912.1|Name=mRNA_H-paniculata_contig6185.13912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5858bp|location=Sequence derived from alignment at H-paniculata_contig6185:1316..7173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCAATCTGATGCAAAATTCGAAAACCCAAAACATCGGAAAGTAGTGAG
TACGCTTGTGTGACAACAAGGGTCTCTGTCCTGTTCTCCCATCTCACCGA
AGACCATGAACGCGAAGGCGTTAGCGGAGATGAAAATTGAGCCGGAAATG
ACTTTGGAGGATATCCCGGAGGGTGAGCGTGGACCGTTCCTGTTTGGACT
ATGTTTCGCGTCCTACACGAATAACAGAAGGCAGCGACTTCTCGAGGAGC
TGAAAACGGGCTTCAGCTCAGGCAGCAACCCCAGGTCCTTTGCTCTCCGT
CAGGACGAGATGGACTTTGGTCAAGACGCCCTGTGAGTGTCGGTAGATCT
GTGAAAGCATTGCGCTTACTGCTGAAATTCTCTTGCGAAGCGGTGGAAGC
GATTAGGCATACATCCGTGGCACCATATGCACTCGTCGTTTAGATGTTGT
GGGCATTTCTTACCAGTGTATGCAGTTCACATATGGCCTCTTCTTTTTTA
TGTGGGCTGTCTCTCGTGTTACCTTCCTTATAATATGGTGTTATTTGCGC
ACTGTACTGTTTGCACTGGGTGACTGGGTGTCTTATCTGTCTATCTCAAA
GGTAGGGTGTTCGGGGTCATGATTAGTTTGCAATACACTATTCCCAGGTT
GGTTTTTCTCGGCATCAGAGCACCATGGAGCGTGTGGAATGTCATACGAA
TCAACCGCTAGTCGAAAACTTGCGAGAAAACAGATGTGCGCGTTTGTGCT
CACGCGGAATTGCCTCTCTAAATACTGGTATTACCTGGCACTTCTAAGCT
GTAACCTGTATACTTGTCTTAGAAGACCATATCCTTTGTTTGAGGAGGTC
TCACATGTGGTCACCACAAGTATGTAACTGTGTCGTGTCGGACAGCGCCT
ATACACGACGATTATCTTCGCTATTCTTCCAGCGGAAAATACAAACCCAA
AAGCGAGGGCGTACAAGTTGTTCGCTCCATCCTGCGGTGTCCCGATTGTA
CTGAATAATATTTATGTGGTACTTTTGCCCTAGCATTATATGTGTACCGC
ACTTCCCAGTTTGTCTGTTAAATAGCTCCTGCTATTATATTGTATAATAG
CGGAAGGAGGTTTCCAGAATTTTGAACCATTGCGGTCATATTTTGTTCCG
TAACGCACAATAGCTGGTGTATACCTCTTTCCCTGCATAGGTACTCTGCA
AGTCAACTGGTCCTCTCTCATGCGTAAATTTCGCGTCTTTGCCTACACCT
CTAGCATACTAAATTCAGTAAGACACTGATTTTGGCCTGAAGGCAATTGA
GCAACGATTTCAATTGGTGTAGAACTTTCACACGTATCGCACAAGATCAT
GGGACACTGTATTCTCAAGTTATCTCCTGTGCACCTGGCGCCCAAAGGGT
TGTAGAACCACGTTACTGCCTATACTCCTTCTGCTGGTAGGGCGCACATG
ACTGAAGGCAAGTGCCCGAAAATGCTAACTCCTTACTGTCTACCAATTGG
TAGACTGTAGAAAAGAAGTACATCAATCCATGCAAGAGTTGTCATGTCGC
TTGCGCAGTACGTCTTTTTTCTGGAATGGGCGCCGCCATCGATAACGATT
TGAACTCTTGCCAACCCACATTATGCCTAAGGAGTAGGGCTCCTAGGGTT
AGGGCTAGCGTAAGTTCTCACCAATAAACTGTTCGTTAAATCCGCACGCA
ACAGCTTGGAAGTCGCCAAAGTCTTTTAACGACGTAAATAATTCCGAATT
TGCGTATCCAAGTTATCGAAAGCAATGGACAGCAATCGGTCTCCAGGGGC
TGTGATACTCTGGAATATGACGACTGCTACCGTAATTCCCGCGCAATGCC
TGACGCAGTGCCATCGTCTACTTGGTTTTACAAGGCAAGCTGGCTACCGA
GATACAGACAAGTCGAAATGCAAAGAAACAACGGAAGGTAGATCACCATC
AAACAAAAATCGACCTAGTGGTCAAACAGGCCTACACAGACTTGTAGCTA
CGCGTCGTTGCCCTCACCTCCTGATCTCAGCCCGATGGTACGCGACCCCC
ACGAATATGTTACTCCTCTCCTTGAAGCTAGGCTTTGATCGGGCAAAGTT
GAAAAATATTAACTGTGAAGATGATTTAATAAGTTCATGAGCTCGGTCGT
TCCTTACATCCACCATGAAAACGTACCTGGATGACGTGCCTAAAAAACAT
ATTGATCTTTATTCTCGTGTTGAACAGCTTTGGCAATATGCCCCATCCCT
CCTGGATATTTTTCACCTTGGGATTGTTGTGGGTCCAGACATTCTTCTCA
CTATTTATTTTCAGGTCGCACTTGTGTTGACTTTTCTGTACATTACTCCA
TCTCTTCCTTCCCCTGCAAGCCTAAGCGCCACCGTCTTACGCGTGCGAAG
CGCTTCTTTGACGATCGTAACAGGAAGAGGTACACGGCAAGCAGACCAAA
CGTGTAGGCTCGCGGCATGCATTAAACATAGGGTCGTCTGGCGCACTTGG
GAATGTCGCTGGAATCCATGACTAGACCTGCCTTAAACACCCAAGATCTG
ATGTCGGGCGTCGCATCGAATGCTTGAGTGTTTCCCGAACAAAGGGTTAA
GGTTGTGACTGGGAAAATGCTGCGTTTTCGTCCCATTCAGCATTCCAAGG
CTCTGTTTACTGACCTGCCCAGGCCGGCAGGAAGGCGGGTCTCTTATGTG
GAAAACAGACCTGAAATATGAGTCATCACTACGTTGGACTTGTCCAACAA
GATTGTGCATACCCTCCCCCCCCGCTTGATCGGAATAACGCACACCTCGG
ATGAACGGCGATGAAGGTTAACGAACAATGTCGCGAATTTTGGGAGCTAC
GATCACATGCCTGTACTAGACGCTTTCCAAAATCCGTTCGAATCGAAAGT
TGAAGCATTTGATTCTGCGGTATGAGCCCACTTTCGCATGTTTTCTACTT
TTGAGCATGGATGTTGGCTGCCGTTTGGATGTTCTTGAAGAAATCTTGAC
TTGAAAAGAAATTTTAGCCGAGCTATGGAGCACACCTCAGTCTTCCCAAC
GACGCGCTCTTGAAGGTAGTCAAACGCCTAACAACTACGGCACACGAAAC
ATCAGTACTCCCGGCTCTTTCATCCTTCCGTTTCTCTTTTTTTGTCTTCG
AAACTCGTGAACTTCTTGTTGTTTGCTTCCAGATCCAACATGATGTGGGC
AGGTGTGGGAAATGCCGCGCTGGGTATGGCCGGCTATGGCATATACAAAA
CCATCCGCTCCCGACCGACATCACGCGTCGGATTGGTCGGAATGGGTGCT
GTGGGCGCCGGCGTCGGATTGACGGCGGGCATGTTGTACAGTATCAAGAC
CAAGATAGCGGTAAGTGCTGGTGATCTTCGGGAAGGAATATAGGGGGAGG
TGATGATCAACGTTATCCTGGAAGAGTGCTTCAATTCTGTACTGGAGTAA
ATTGTGAAGGAATATTTAGACGTTGTTTGTACGTTGTCCGCGAGCTCCAT
GCGAAATTTGGACCCATTTCAGGGTATGGATTACACGGTTGGAGCCATTC
CTCTACTGCCTCATAGTCTGAATGACCTATCTAATAAAAATATGTGAATT
TGTTGTGGCTATGTCCAGGATTAAGACGGAGATGTCGGTGTGTGGCCATT
CTCTTGATTTATATGCTCATACTTCATGTTGATGATTGCAATGTCAACAG
TGACTTACTTGACTCTTTGTCGTTGACTCGACAAGATGAAGTTGGCTTCC
TGAGGTAGCCCCCCAGTTCCACACCAGATGACGGTATGTAACACTCTCGT
GCTTCTAAATGTAATGTAGACGGACTTTAATTCTTAGGTTGACTAAAAAT
GTTCGTTCCACTGCATTTACGAGAGCGTAGAATGAAGCAAGATCTGCTTG
GTTCTGTTTTGGCTTTATTGATGTTAGCATCAAGACCGACGTCACGATAG
TTGGTCATAGGTTGGATGGGACGGGACGAGTATCTTGTCGTGGTCCAAGA
CATGTGCCTCTCGTCTACCGTGGCACCCGTTGGATAACGCCTCCTGTGGT
CCTATTTCTCGAGGTCAATTTTCTCGAAAACGACAGTGCTCATGACACGG
ATGGTGGTATTTTTGAAAGTGCGCCCTTGAGATCTTTCGATAGGCATGTT
GTTTCGGCAATGCAGGCTCTTGGAAAATAAATGTCAGCGGGTGCGATATC
AAAGGTTGTCACGGTAGACCTTCAGCACAACTTTATTCTGCTGTACATGC
TGTAACTGAACCTCCGAATTGGAATCTGAAAATCTGAAAACACTTCGTCA
TCGACAGTGCAATTTTTTTTGTCCCCCTATATCGAACGCAGTTGCTGAGA
AACTCGCCAGAAGCCCGTTGTTATACACTTGGTTATCACTCTCCAGCATC
AGATTTTTACATCTCGATCTTTTTCCCTCACTCTATTGGCTGAATTTTAC
CAAGTAGGCGGTACACATCTGCTCGGACGTTGTAAATAACAACACGAAGA
ACCCATCATCTTACCCCTCCTCATATCTAGCGCAATTCCAGTGAATTTAT
CATTGCCCCAAATCCTCGTGATGTCGTTATAAACCTACACGTACTTGTGA
TTATTCGCGCAAGTCATAACTTTGACCCTAAAACTGCGTATTCATTCTGG
ATTTGATTTGATTTTTCTGGTGAGAGTACACATCTAAGCTTTCAGGTCAG
CTTCATAACCTCAACAGGTACACGATGAAGTGTCATTATTTGCATTTCAA
AGAGCTTACGAATCAGGGTCGCTGGGTGATTTTTTTTTTCCAGGTCTTCA
TCCTCTCTCCCGCTTTGAGAGCTACGTCGGGACTCAGATAGTTTTTTCGG
TCTCCAAAAGTGAGATCTGGGGGCTCATAAGGGTACAGACGTTTTGTCCC
GCTCGCTGTACCCGCCCAAGATGATCATCCATTTTTCACCCCCTTTTTTT
CGAGATCTTGATCAGACTAATTTGCCCCTTAACCAATTCGAGTAAGAACA
GAGTGTGATGCACATGATATGGCCGAAGACTTTCCCCCTGCAGAGTATGC
ATAAAATGTATTTGATTTGTGCTCTCTCGATGTGCTGTCCTTCGAACCGT
GTTCTCCCTGGGTTACGTAGTACGTGTATGTACCTGGGAACACTTTCATG
CTTCCCGCCGGATTTCCTCTCCTGCTTGGATTTCCCGCAATCAACTGTCC
TTTTATCAACTTATCCCCGCATCACCCCGTCGCCCACCTTACCTGCATCT
TCCTAAACAGGAGATGGACGCTGGCCCGATTAACCCAAAGGACAGGCAAT
GCGACGAACTCCTGAAATTCGAGGCGTGCGCAAACAACTCGTTATGCATG
GATTTCGTGCAGAAGGAAGGATTCTCGCGCTTTTTGAATGCGTTCGAGAC
CTGTAAGAAACGGCGTGATGACAGCTCGGTCGCGGAGAAGGAAGGACTGG
AGTTGGCACTGAAATCGGAAAAAGAGGCGCTGAATGCGGTTCTGAAATCG
AAATAGTTTTTCTTCTGTAGTGTTCTTCGCCGCCTTTTTTCGTTTTTTCG
AGAAAGGGAGAGGCGAGGGAAAAAATCTATTTTCCCCTACCCTACGGAGA
TTTGATTTTGTTCGATTTATGTATCGTCATTCATGGCTTCAAGGCGCAGT
TTGTTCGACTTTTCGGAGGGTGCGCGAAGGGATCAACAGCATTTGAATGG
CGCGCCGTGAATGGCTTGCTGTCTTGGTTACCTGCCTTTCGCATCACAAT
GCACCGCGTCTGGCGGATGATCAATAGATCAACTTGTTTTTATGCCGTCG
GGAGGAACTAGCTGTTAAGACGGTTGAATTCACCGGTGGCGTTGGGGCGC
GCGGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig6185:1316..7173-

>mRNA_H-paniculata_contig6185.13912.1 ID=mRNA_H-paniculata_contig6185.13912.1|Name=mRNA_H-paniculata_contig6185.13912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at H-paniculata_contig6185:1316..7173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGCGAAGGCGTTAGCGGAGATGAAAATTGAGCCGGAAATGACTTT
GGAGGATATCCCGGAGGGTGAGCGTGGACCGTTCCTGTTTGGACTATGTT
TCGCGTCCTACACGAATAACAGAAGGCAGCGACTTCTCGAGGAGCTGAAA
ACGGGCTTCAGCTCAGGCAGCAACCCCAGGTCCTTTGCTCTCCGTCAGGA
CGAGATGGACTTTGGTCAAGACGCCCTATGAACGCGAAGGCGTTAGCGGA
GATGAAAATTGAGCCGGAAATGACTTTGGAGGATATCCCGGAGGGTGAGC
GTGGACCGTTCCTGTTTGGACTATGTTTCGCGTCCTACACGAATAACAGA
AGGCAGCGACTTCTCGAGGAGCTGAAAACGGGCTTCAGCTCAGGCAGCAA
CCCCAGGTCCTTTGCTCTCCGTCAGGACGAGATGGACTTTGGTCAAGACG
CCCTATCCAACATGATGTGGGCAGGTGTGGGAAATGCCGCGCTGGGTATG
GCCGGCTATGGCATATACAAAACCATCCGCTCCCGACCGACATCACGCGT
CGGATTGGTCGGAATGGGTGCTGTGGGCGCCGGCGTCGGATTGACGGCGG
GCATGTTGTACAGTATCAAGACCAAGATAGCGATCCAACATGATGTGGGC
AGGTGTGGGAAATGCCGCGCTGGGTATGGCCGGCTATGGCATATACAAAA
CCATCCGCTCCCGACCGACATCACGCGTCGGATTGGTCGGAATGGGTGCT
GTGGGCGCCGGCGTCGGATTGACGGCGGGCATGTTGTACAGTATCAAGAC
CAAGATAGCGGAGATGGACGCTGGCCCGATTAACCCAAAGGACAGGCAAT
GCGACGAACTCCTGAAATTCGAGGCGTGCGCAAACAACTCGTTATGCATG
GATTTCGTGCAGAAGGAAGGATTCTCGCGCTTTTTGAATGCGTTCGAGAC
CTGTAAGAAACGGCGTGATGACAGCTCGGTCGCGGAGAAGGAAGGACTGG
AGTTGGCACTGAAATCGGAAAAAGAGGCGCTGAATGCGGTTCTGAAATCG
AAATAGGAGATGGACGCTGGCCCGATTAACCCAAAGGACAGGCAATGCGA
CGAACTCCTGAAATTCGAGGCGTGCGCAAACAACTCGTTATGCATGGATT
TCGTGCAGAAGGAAGGATTCTCGCGCTTTTTGAATGCGTTCGAGACCTGT
AAGAAACGGCGTGATGACAGCTCGGTCGCGGAGAAGGAAGGACTGGAGTT
GGCACTGAAATCGGAAAAAGAGGCGCTGAATGCGGTTCTGAAATCGAAAT
AG
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