prot_H-paniculata_contig6180.13908.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6180.13908.1
Unique Nameprot_H-paniculata_contig6180.13908.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length82
Homology
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 4.000e-17
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 0
Query:    1 GEPVHVLPCLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 39
            GE VHVLPCLH+FHA+CLDVWI GHPSCPYCK +LNV+P
Sbjct:  333 GEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIP 371          
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.250e-17
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 0
Query:    1 GEPVHVLPCLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPATEQERIPNSNT 51
            GE VHVLPCLH+FHA+CLDVWI GHPSCPYCK +LNV+P   QE   +S T
Sbjct:  427 GEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLNVIP---QENNSSSET 474          
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A8C3ZMD8_9TELE (RING-type domain-containing protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZMD8_9TELE)

HSP 1 Score: 56.6 bits (135), Expect = 1.140e-8
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 0
Query:    1 GEPVHVLPCLHMFHAQCLDVWIEGHPSCPYCKTNL 35
            GE + VLPCLH FHA+C+D W++ +PSCP C+ ++
Sbjct:   57 GEELRVLPCLHDFHAECVDRWLQQNPSCPICRADV 91          
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A4Y1RQH7_PRUDU (RING-type E3 ubiquitin transferase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RQH7_PRUDU)

HSP 1 Score: 57.4 bits (137), Expect = 1.220e-8
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 39
            GE + VLP C+H+FHA+C+D+W+  H +CP C+T++   P
Sbjct:   69 GEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPP 108          
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A833QT76_9POAL (E3 ubiquitin-protein ligase ATL59 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QT76_9POAL)

HSP 1 Score: 57.8 bits (138), Expect = 1.960e-8
Identity = 19/47 (40.43%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPATEQERI 46
            G+PV ++P C+H+FH  C+D W++ H +CP C+ N++ L   + E I
Sbjct:  101 GDPVRLMPNCMHLFHQDCIDKWLQSHATCPICRANVDPLKPADAEEI 147          
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A6P5SY84_PRUAV (RING-type E3 ubiquitin transferase n=3 Tax=Prunus TaxID=3754 RepID=A0A6P5SY84_PRUAV)

HSP 1 Score: 57.4 bits (137), Expect = 2.150e-8
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 39
            GE + VLP C+H+FHA+C+D+W+  H +CP C+T++   P
Sbjct:   99 GEAIRVLPACMHLFHAECIDMWLSSHSNCPLCRTDIEPPP 138          
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A5E4F3R2_PRUDU (RING-type E3 ubiquitin transferase n=2 Tax=Prunus TaxID=3754 RepID=A0A5E4F3R2_PRUDU)

HSP 1 Score: 57.4 bits (137), Expect = 2.150e-8
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 39
            GE + VLP C+H+FHA+C+D+W+  H +CP C+T++   P
Sbjct:   99 GEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPP 138          
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A251NVP6_PRUPE (RING-type E3 ubiquitin transferase n=4 Tax=Prunus TaxID=3754 RepID=A0A251NVP6_PRUPE)

HSP 1 Score: 57.4 bits (137), Expect = 2.230e-8
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 0
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 39
            GE + VLP C+H+FHA+C+D+W+  H +CP C+T++   P
Sbjct:  101 GEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPP 140          
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A6D2JMU9_9BRAS (RING-type domain-containing protein n=4 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JMU9_9BRAS)

HSP 1 Score: 58.9 bits (141), Expect = 2.690e-8
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0
Query:    8 PCLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPATEQERIPNSNTVTPGI--ERGGL 61
            PC H+FHA C+DVW+  H +CP C+ +L V    E   IP+  TV+ G   ERG L
Sbjct:  149 PCSHVFHADCVDVWLSDHSTCPLCRADLVVKEGGESYSIPDPGTVSSGSDPERGVL 204          
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: UPI001CB9B8CD (E3 ubiquitin-protein ligase ATL6-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9B8CD)

HSP 1 Score: 58.9 bits (141), Expect = 2.740e-8
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 0
Query:    2 EPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPA--TEQERIPNSNT 51
            E + ++P C H+FHA+C+D W+E H +CP C++NL   P   T+Q+++PN  T
Sbjct:  140 ETIRLIPKCDHVFHAECIDAWLENHVTCPVCRSNLVPQPGEITQQQQLPNDLT 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX1_ECTSI4.000e-1782.05RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JT04_9PHAE8.250e-1770.59RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8C3ZMD8_9TELE1.140e-854.29RING-type domain-containing protein n=1 Tax=Dentic... [more]
A0A4Y1RQH7_PRUDU1.220e-847.50RING-type E3 ubiquitin transferase n=1 Tax=Prunus ... [more]
A0A833QT76_9POAL1.960e-840.43E3 ubiquitin-protein ligase ATL59 n=1 Tax=Carex li... [more]
A0A6P5SY84_PRUAV2.150e-847.50RING-type E3 ubiquitin transferase n=3 Tax=Prunus ... [more]
A0A5E4F3R2_PRUDU2.150e-847.50RING-type E3 ubiquitin transferase n=2 Tax=Prunus ... [more]
A0A251NVP6_PRUPE2.230e-847.50RING-type E3 ubiquitin transferase n=4 Tax=Prunus ... [more]
A0A6D2JMU9_9BRAS2.690e-846.43RING-type domain-containing protein n=4 Tax=Colute... [more]
UPI001CB9B8CD2.740e-843.40E3 ubiquitin-protein ligase ATL6-like n=1 Tax=Erig... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..47
e-value: 6.2E-12
score: 46.5
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 2..32
e-value: 2.6E-8
score: 34.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 6..32
score: 8.683
NoneNo IPR availablePANTHERPTHR14155:SF202coord: 1..35
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 1..35
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6180contigH-paniculata_contig6180:8689..10128 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6180.13908.1mRNA_H-paniculata_contig6180.13908.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6180 8689..10129 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6180.13908.1 ID=prot_H-paniculata_contig6180.13908.1|Name=mRNA_H-paniculata_contig6180.13908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
GEPVHVLPCLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPATEQERIPNSN
TVTPGIERGGLTRILHDASALISVGANRLRYY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING