mRNA_H-paniculata_contig6180.13908.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6180.13908.1
Unique NamemRNA_H-paniculata_contig6180.13908.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 4.000e-17
Identity = 32/39 (82.05%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 GEPVHVLPCLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 117
            GE VHVLPCLH+FHA+CLDVWI GHPSCPYCK +LNV+P
Sbjct:  333 GEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIP 371
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BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.250e-17
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 GEPVHVLPCLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPATEQERIPNSNT 153
            GE VHVLPCLH+FHA+CLDVWI GHPSCPYCK +LNV+P   QE   +S T
Sbjct:  427 GEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLNVIP---QENNSSSET 474
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BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A8C3ZMD8_9TELE (RING-type domain-containing protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZMD8_9TELE)

HSP 1 Score: 56.6 bits (135), Expect = 1.140e-8
Identity = 19/35 (54.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 GEPVHVLPCLHMFHAQCLDVWIEGHPSCPYCKTNL 105
            GE + VLPCLH FHA+C+D W++ +PSCP C+ ++
Sbjct:   57 GEELRVLPCLHDFHAECVDRWLQQNPSCPICRADV 91
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BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A4Y1RQH7_PRUDU (RING-type E3 ubiquitin transferase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RQH7_PRUDU)

HSP 1 Score: 57.4 bits (137), Expect = 1.220e-8
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 117
            GE + VLP C+H+FHA+C+D+W+  H +CP C+T++   P
Sbjct:   69 GEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPP 108
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BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A833QT76_9POAL (E3 ubiquitin-protein ligase ATL59 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QT76_9POAL)

HSP 1 Score: 57.8 bits (138), Expect = 1.960e-8
Identity = 19/47 (40.43%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPATEQERI 138
            G+PV ++P C+H+FH  C+D W++ H +CP C+ N++ L   + E I
Sbjct:  101 GDPVRLMPNCMHLFHQDCIDKWLQSHATCPICRANVDPLKPADAEEI 147
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BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A6P5SY84_PRUAV (RING-type E3 ubiquitin transferase n=3 Tax=Prunus TaxID=3754 RepID=A0A6P5SY84_PRUAV)

HSP 1 Score: 57.4 bits (137), Expect = 2.150e-8
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 117
            GE + VLP C+H+FHA+C+D+W+  H +CP C+T++   P
Sbjct:   99 GEAIRVLPACMHLFHAECIDMWLSSHSNCPLCRTDIEPPP 138
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BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A5E4F3R2_PRUDU (RING-type E3 ubiquitin transferase n=2 Tax=Prunus TaxID=3754 RepID=A0A5E4F3R2_PRUDU)

HSP 1 Score: 57.4 bits (137), Expect = 2.150e-8
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 117
            GE + VLP C+H+FHA+C+D+W+  H +CP C+T++   P
Sbjct:   99 GEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPP 138
[Close]
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A251NVP6_PRUPE (RING-type E3 ubiquitin transferase n=4 Tax=Prunus TaxID=3754 RepID=A0A251NVP6_PRUPE)

HSP 1 Score: 57.4 bits (137), Expect = 2.230e-8
Identity = 19/40 (47.50%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 GEPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLP 117
            GE + VLP C+H+FHA+C+D+W+  H +CP C+T++   P
Sbjct:  101 GEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPP 140
[Close]
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: A0A6D2JMU9_9BRAS (RING-type domain-containing protein n=4 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JMU9_9BRAS)

HSP 1 Score: 58.9 bits (141), Expect = 2.690e-8
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   22 PCLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPATEQERIPNSNTVTPGI--ERGGL 183
            PC H+FHA C+DVW+  H +CP C+ +L V    E   IP+  TV+ G   ERG L
Sbjct:  149 PCSHVFHADCVDVWLSDHSTCPLCRADLVVKEGGESYSIPDPGTVSSGSDPERGVL 204
[Close]
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Match: UPI001CB9B8CD (E3 ubiquitin-protein ligase ATL6-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9B8CD)

HSP 1 Score: 58.9 bits (141), Expect = 2.740e-8
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    4 EPVHVLP-CLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPA--TEQERIPNSNT 153
            E + ++P C H+FHA+C+D W+E H +CP C++NL   P   T+Q+++PN  T
Sbjct:  140 ETIRLIPKCDHVFHAECIDAWLENHVTCPVCRSNLVPQPGEITQQQQLPNDLT 192
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6180.13908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAX1_ECTSI4.000e-1782.05RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JT04_9PHAE8.250e-1770.59RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8C3ZMD8_9TELE1.140e-854.29RING-type domain-containing protein n=1 Tax=Dentic... [more]
A0A4Y1RQH7_PRUDU1.220e-847.50RING-type E3 ubiquitin transferase n=1 Tax=Prunus ... [more]
A0A833QT76_9POAL1.960e-840.43E3 ubiquitin-protein ligase ATL59 n=1 Tax=Carex li... [more]
A0A6P5SY84_PRUAV2.150e-847.50RING-type E3 ubiquitin transferase n=3 Tax=Prunus ... [more]
A0A5E4F3R2_PRUDU2.150e-847.50RING-type E3 ubiquitin transferase n=2 Tax=Prunus ... [more]
A0A251NVP6_PRUPE2.230e-847.50RING-type E3 ubiquitin transferase n=4 Tax=Prunus ... [more]
A0A6D2JMU9_9BRAS2.690e-846.43RING-type domain-containing protein n=4 Tax=Colute... [more]
UPI001CB9B8CD2.740e-843.40E3 ubiquitin-protein ligase ATL6-like n=1 Tax=Erig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6180contigH-paniculata_contig6180:8689..10129 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue2.2e-14
Seed eggNOG ortholog2880.D8LAX1
KEGG koko:K16271
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons2
Model size249
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930699.3113708-CDS-H-paniculata_contig6180:8688..87361622930699.3113708-CDS-H-paniculata_contig6180:8688..8736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6180 8689..8736 +
1691481412.0067892-CDS-H-paniculata_contig6180:8688..87361691481412.0067892-CDS-H-paniculata_contig6180:8688..8736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6180 8689..8736 +
1622930699.3264577-CDS-H-paniculata_contig6180:9930..101281622930699.3264577-CDS-H-paniculata_contig6180:9930..10128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6180 9931..10128 +
1691481412.0300312-CDS-H-paniculata_contig6180:9930..101281691481412.0300312-CDS-H-paniculata_contig6180:9930..10128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6180 9931..10128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6180.13908.1prot_H-paniculata_contig6180.13908.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6180 8689..10128 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6180.13908.1

>prot_H-paniculata_contig6180.13908.1 ID=prot_H-paniculata_contig6180.13908.1|Name=mRNA_H-paniculata_contig6180.13908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
GEPVHVLPCLHMFHAQCLDVWIEGHPSCPYCKTNLNVLPATEQERIPNSN
TVTPGIERGGLTRILHDASALISVGANRLRYY
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mRNA from alignment at H-paniculata_contig6180:8689..10129+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6180.13908.1 ID=mRNA_H-paniculata_contig6180.13908.1|Name=mRNA_H-paniculata_contig6180.13908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1441bp|location=Sequence derived from alignment at H-paniculata_contig6180:8689..10129+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAGCCGGTGCACGTACTGCCCTGCCTTCACATGTTCCACGCACAGGT
GGGTTAATTAAATTCACACAGAGAGAAGATTTATGACGTGGTAAAGTGGC
ACGTTGACGTAGGATATGAGGGTATTTAGGTGAGACTTCCCGATAAACTG
TCTGCTTCCATGATTTTTCCATTATCGTTTCCTGTGGTCGGATATTAGAT
GAATAGAGTGCAGTGTGTTCGCCTATTTTCTTTAGTTTAGCTACCAAATT
TTACATAGCGTTGGTGTCAAACAGGATGCATAACCTCAGTCATCATTCAT
TACACGAGTACAAAAAACAAGTACTGTCCTGGGTTGTGAATGAGGGTCTG
CAGGTCAGGTGAGTGTTTTTGTCAAGCGCTCACATCTAGGTCATATCATC
TCTCTCTACGCACAATACAAACCAGAGAAATACAATTCGCGGTGAGTGTA
GTAGTCCACGCGCTCTGCCCGTTCCGTGTGGCACAAGAAGTTCTGGTACT
TGATCGTGAACAGGGCGAATTGAATATCATGTGATGTATGTCCTATGGAT
CTATTGCGCAGCGCCAAATAACACTCAGTTCCATTCGAACTGCAGTTTCA
TCTGAACGGCGCACGCGGTTGGTCGTGGATGAGTCGTAGCAGTGGTTATA
GGGAAGTAAACATGCGTTCACGTCCAGCTCACCCAGCATAGTCTACTCAA
ATCTCTCACAGTGAGGGTCGCTAGGTCACAAGCTCCTGTTATGGATTTGA
AAGTTATAGTTGAGCATCTCTATAGTCATGATCCATGATTATGGGTTACA
TAGCCCACAAACTATTGGTGTAAACTTACTTTATATAAGAGGAGTGGGGC
TTAGAATACGTACGTCTAGACAGTATTTTGCTGGAAGTCCGCCCCACGCT
CCCCCGTACCCCCCGCCTTCCCCTCTGGACACTCCTGAACAAAAACATGT
AACCTCTGTTAATCGTTTTCAATTGTTTTGTGTTCCTTTAAATCAGCGCC
GTCGGTAAGTTTATCGAACTGCCTTCCACGAGAACTTGTGACACTTTCAG
GCCGCCATTGCGTCAGTATTATCTATCTGATCTGTTTAGTTACGAGAGTA
ACGCCGGTACCCCTCCCGCCCCCCTTGCCTTGATCCCCCGCGTCGTTATT
TCTCGTGCCATGTGCCTTCCCGTCCCATTCTGTCACATTCCATCAAAACC
GCGTCCTTCCGGAACTCTGCCTTGTACGTTTTTGTCATCTAGTGCCTTGA
TGTGTGGATCGAAGGACACCCTTCCTGCCCATACTGCAAAACCAACCTCA
ACGTCTTGCCTGCCACGGAACAAGAGCGAATCCCGAACAGCAACACTGTC
ACGCCTGGAATAGAGCGAGGGGGACTCACCCGGATCCTGCATGATGCGTC
AGCTCTTATTTCAGTCGGCGCAAACAGACTCCGCTATTACA
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Coding sequence (CDS) from alignment at H-paniculata_contig6180:8689..10129+

>mRNA_H-paniculata_contig6180.13908.1 ID=mRNA_H-paniculata_contig6180.13908.1|Name=mRNA_H-paniculata_contig6180.13908.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig6180:8689..10129+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCGAGCCGGTGCACGTACTGCCCTGCCTTCACATGTTCCACGCACAGGG
CGAGCCGGTGCACGTACTGCCCTGCCTTCACATGTTCCACGCACAGTGCC
TTGATGTGTGGATCGAAGGACACCCTTCCTGCCCATACTGCAAAACCAAC
CTCAACGTCTTGCCTGCCACGGAACAAGAGCGAATCCCGAACAGCAACAC
TGTCACGCCTGGAATAGAGCGAGGGGGACTCACCCGGATCCTGCATGATG
CGTCAGCTCTTATTTCAGTCGGCGCAAACAGACTCCGCTATTACTGCCTT
GATGTGTGGATCGAAGGACACCCTTCCTGCCCATACTGCAAAACCAACCT
CAACGTCTTGCCTGCCACGGAACAAGAGCGAATCCCGAACAGCAACACTG
TCACGCCTGGAATAGAGCGAGGGGGACTCACCCGGATCCTGCATGATGCG
TCAGCTCTTATTTCAGTCGGCGCAAACAGACTCCGCTATTAC
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