mRNA_H-paniculata_contig618.13905.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig618.13905.1
Unique NamemRNA_H-paniculata_contig618.13905.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig618.13905.1 vs. uniprot
Match: A0A067CKU1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CKU1_SAPPC)

HSP 1 Score: 76.3 bits (186), Expect = 5.890e-16
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 CVDTVALITAKTEELGNS-GACMQCDPANNVCPPGCQALIDYLYVSCDGVTTPDGLFYDPNNIIEGTWSEQVR 216
            C   V  I A+ +  G+S G+CM CDPA N CP  CQ LI+ LYV CDGV +P GLF+DP   I G W+ QV 
Sbjct:   39 CASAVLAIAAQGD--GSSPGSCMSCDPAQNKCPAKCQPLINTLYVDCDGVYSPPGLFFDPAAKIHGYWNGQVN 109
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BLAST of mRNA_H-paniculata_contig618.13905.1 vs. uniprot
Match: D8LR01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR01_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 6.380e-9
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  115 IDYLYVSCDGVTTPDGLFYDPNNIIEGTWSEQVR 216
            +D  Y  CDGVTTPDGL++DP+N IEG WS++V+
Sbjct:    1 MDNFYADCDGVTTPDGLYFDPDNAIEGEWSDKVK 34
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BLAST of mRNA_H-paniculata_contig618.13905.1 vs. uniprot
Match: A0A6H5JA51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA51_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.280e-8
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:  115 IDYLYVSCDGVTTPDGLFYDPNNIIEGTWSEQVR 216
            +D LY  CDGVTTPDGL++DP+N IEG WS+++ 
Sbjct:    1 MDNLYSHCDGVTTPDGLYFDPDNAIEGEWSDKIE 34
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig618.13905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A067CKU1_SAPPC5.890e-1652.05Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
D8LR01_ECTSI6.380e-961.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA51_9PHAE1.280e-861.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig618contigH-paniculata_contig618:29539..30558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue1.5e-09
Seed eggNOG ortholog65071.PYU1_T002543
Hectar predicted targeting categoryother localisation
EggNOG free text desc.function. Source PGD
EggNOG OGs1MHTN@121069,2CXBZ@1,2S4KE@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002280.1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons2
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930699.151334-CDS-H-paniculata_contig618:29538..296251622930699.151334-CDS-H-paniculata_contig618:29538..29625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig618 29539..29625 +
1691481411.961608-CDS-H-paniculata_contig618:29538..296251691481411.961608-CDS-H-paniculata_contig618:29538..29625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig618 29539..29625 +
1622930699.1701488-CDS-H-paniculata_contig618:30420..305581622930699.1701488-CDS-H-paniculata_contig618:30420..30558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig618 30421..30558 +
1691481411.975074-CDS-H-paniculata_contig618:30420..305581691481411.975074-CDS-H-paniculata_contig618:30420..30558Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig618 30421..30558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig618.13905.1prot_H-paniculata_contig618.13905.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig618 29539..30558 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig618.13905.1

>prot_H-paniculata_contig618.13905.1 ID=prot_H-paniculata_contig618.13905.1|Name=mRNA_H-paniculata_contig618.13905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
CVDTVALITAKTEELGNSGACMQCDPANNVCPPGCQALIDYLYVSCDGVT
TPDGLFYDPNNIIEGTWSEQVRTV*
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mRNA from alignment at H-paniculata_contig618:29539..30558+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig618.13905.1 ID=mRNA_H-paniculata_contig618.13905.1|Name=mRNA_H-paniculata_contig618.13905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig618:29539..30558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGTGGACACGGTGGCGCTGATCACTGCCAAGACGGAAGAGCTGGGGAA
TAGTGGTGCCTGCATGCAATGCGATCCCGCAAATAACGTGAGCGAACCCC
TCGCTCCCCCAATAGTTGGCATATTCAATATTTAGAAGGTTAGAGGACAT
GAATTTATTGCTTCCACCGCGTTCTTCCTGGGTACTCAAGTTTCCTCGCT
CTCTGGATTTATCTTGGTTTGTATTGTTGCGTTTGTTAGGATCATTGTGC
TGTCTCGTGCGGCGCGCTACGGTGTAGTAGTTCCCCTTGTCTCCCCTAAT
CCCCCCGTGGTACGCCATTTCTGCTTGCTCCAAGCACAATATTCTCCTAC
CGGCTCCTCTTTACGGCATATGACGTTAGACCCTAGTAGGGCTTCCGGCT
GAATCAATTCAAGGCTTGCCATAGAGTGGTCCGAAAAAGAACATTATTTC
CCCGACGACCTTGAATTCAAATTCGCGTTTCACCCGGGTACCCTTCGTAT
AGGAACTATGTAGGGCGTGCTGAGCCAAGTAACGTTCGTCACTTCTCGTG
TAGCCTTGAAACTGCCCCTAAACCGATCTACCCATTGTAACAGTGTAACA
TACAAACCTATGCTTGGGCCCATGATGTGTTGCGCCATCTTTTAATCCAT
TTCGGACAGCCGAGACCAAGCTGGCCGGTTGGCATCAGTGTCATCCCTTT
ACTATTAAAATTAAGATGCCAAGCGTGATTGCAAAGATCAGGGAAGTTTG
ATCTTGTACCTTCGAGTTTGTAGGTTGTATTTTATCGGCACCTCACGAGC
CAAGAGCTACCTGCTTTTGAAACGACCGACACATCTCTGCGCAAAGCTTG
GCACTACACAATCGAACCGCTAATGTTGCCAGGTGTGTCCCCCCGGTTGT
CAAGCTCTAATAGACTACCTGTACGTGAGCTGCGACGGAGTTACTACGCC
CGACGGGCTCTTCTACGACCCTAACAATATCATCGAAGGCACGTGGTCAG
AACAGGTGAGGACCGTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig618:29539..30558+

>mRNA_H-paniculata_contig618.13905.1 ID=mRNA_H-paniculata_contig618.13905.1|Name=mRNA_H-paniculata_contig618.13905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig618:29539..30558+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGTGGACACGGTGGCGCTGATCACTGCCAAGACGGAAGAGCTGGGGAA
TAGTGGTGCCTGCATGCAATGCGATCCCGCAAATAACTGCGTGGACACGG
TGGCGCTGATCACTGCCAAGACGGAAGAGCTGGGGAATAGTGGTGCCTGC
ATGCAATGCGATCCCGCAAATAACGTGTGTCCCCCCGGTTGTCAAGCTCT
AATAGACTACCTGTACGTGAGCTGCGACGGAGTTACTACGCCCGACGGGC
TCTTCTACGACCCTAACAATATCATCGAAGGCACGTGGTCAGAACAGGTG
AGGACCGTCTAAGTGTGTCCCCCCGGTTGTCAAGCTCTAATAGACTACCT
GTACGTGAGCTGCGACGGAGTTACTACGCCCGACGGGCTCTTCTACGACC
CTAACAATATCATCGAAGGCACGTGGTCAGAACAGGTGAGGACCGTCTAA
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