mRNA_H-paniculata_contig6177.13903.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6177.13903.1
Unique NamemRNA_H-paniculata_contig6177.13903.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6177.13903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6177contigH-paniculata_contig6177:5604..7489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size354
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6177.13903.1prot_H-paniculata_contig6177.13903.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6177 5604..7489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930698.7769198-CDS-H-paniculata_contig6177:5603..56921622930698.7769198-CDS-H-paniculata_contig6177:5603..5692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 5604..5692 +
1691481411.7160544-CDS-H-paniculata_contig6177:5603..56921691481411.7160544-CDS-H-paniculata_contig6177:5603..5692Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 5604..5692 +
1622930698.7887251-CDS-H-paniculata_contig6177:6768..68441622930698.7887251-CDS-H-paniculata_contig6177:6768..6844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 6769..6844 +
1691481411.7261388-CDS-H-paniculata_contig6177:6768..68441691481411.7261388-CDS-H-paniculata_contig6177:6768..6844Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 6769..6844 +
1622930698.8108087-CDS-H-paniculata_contig6177:7300..74891622930698.8108087-CDS-H-paniculata_contig6177:7300..7489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 7301..7489 +
1691481411.7342062-CDS-H-paniculata_contig6177:7300..74891691481411.7342062-CDS-H-paniculata_contig6177:7300..7489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6177 7301..7489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6177.13903.1

>prot_H-paniculata_contig6177.13903.1 ID=prot_H-paniculata_contig6177.13903.1|Name=mRNA_H-paniculata_contig6177.13903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
QLQETLERVRREADRREDDARDRQEDVRKRWKDAVARAEALQAEAHESTT
PLLRQVRSLQEEMRLRQEAVRAAEASLTDRAAAAENACRDADNRRRAAEA
AAVSAEEKAHKSQGEVW*
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mRNA from alignment at H-paniculata_contig6177:5604..7489+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6177.13903.1 ID=mRNA_H-paniculata_contig6177.13903.1|Name=mRNA_H-paniculata_contig6177.13903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1886bp|location=Sequence derived from alignment at H-paniculata_contig6177:5604..7489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTACAGGAGACCTTGGAGCGTGTGAGGCGAGAGGCTGACAGACGGGA
GGATGACGCGCGGGACCGGCAGGAGGACGTACGTAAAAGGTAAAATACGA
AATTGTACACTGAAAGTTCATGCCTGACTTGTGCAGCGTTGCAAGCTAAA
TTTATAGTGTTGTTTTCAGTTGGTCAGTAAAACCCTTTGACATTTGGCGC
GAGTCTTACCCATACGGCCTTACCTATTGTGTTGTAAGGCATAGACTTAA
CGTTTGTTCGGTGCTTCGTTGTGTGTGTGTGTGTGTGTAATATATAGATG
TATATATTTATATTTATGTATATTGCATTTTGGACAGATCAGAGGATCTG
ATGGCGTTTGATTTTTTCAGAGCTCAGTGTTACATTTTCTGATTTTTAAT
ACGCTATTTTTTATCTATTCTGATATGTTGTGTTCTTCTCTCATGTGGTT
TGAACATGAACCCCGCTGTTTTTTTATACAGCAAGCAAGGAGTTCCAATT
AGAATTGGCATGTTGTTTTTGTTTTCCTTCGGTTCGTATTTTAGGAAATG
AGCTTGCTCCTATTTTCCAACGACTATGCATGTAATTGTTCTTTTCAAGT
TGATTGAAAATCTTCCTTTGTTTGATCTCATTTTGCTGATAACTGGACAC
AATCGAAAATATTTTGTTAGGCGAGCTGCATAATCTACCTCAACATGGGT
ACGATGGAGTTATTGCATGAGCGTTATCATGGATGTACTCACTGGGGCAA
GAGTTGGCTTGTAAATGAGACTCGCGGTGGATGAACGAGGTATTTAGCTC
ATGTTATGCTCCTCATGTCTCCTTATTTGTGTATTTTTGCTCAGGAATGT
AAACAGGGGAAGCATTCGTTCATCGCCCCCCTCCCCCCCCCCTGTCCTGA
ATACGCTAGGATTGAGGTAGATCGGGCATTTGACAATATAGAAAAGAGGG
ATTGGCCATCGGAAATCGCTCTGGTAGGCAAAAGGCTCTATCCTCCCGAG
GACGCGTGGTCAATGGTGTATCAACTACGACATGCAAAGCATTAGTACGC
CCCCCCCTGTTGTTGACAGCACCAGGCTAATGAACTAATTATCCATGAAA
CTGTTTTGACTGTTTCCATTTGCTGTTCGTCGACACGATCGAAACCGCCC
CCTTCAAAACAACAGATGGAAAGATGCTGTTGCTCGCGCGGAGGCTCTGC
AAGCCGAGGCTCACGAGTCCACGACACCCCTTCTCCGGCAGGTACAGTTA
GTGTGTGTGTGTGTGTATGTATATATGTTTGTATATATGTTGCATAGTTA
TTTTCCTCGATACTTACATTAATGAAGGATGGAAATCTACGAGTGACTGA
CGAGGGTCAGATGTGGCTTTAAATATCAAATAAGGGAAACAGGTTCCTTT
TATTTCATTCTACTTTCAGATACAGTATATCTATATCTATATCTCTCTAT
ATATATATCAGTGTGTATCGTGTACGTATGTGTTTGTTTGTGTGTTTTGT
GCGATTTGCTTATGTGTATGTGACTTTCCCAACCCTGGTTGAATCTGCTG
TTGAACTAGCGAAGATGTTTGTAACATTATTTTCATTTTTTTTCTTATAT
TTCTTATATTTCTTGTGCATCTGGAGAAGTTTTCGGGCGTCAATCACATG
CTGCTATACCGAATATCGACATAATTTCTATCATATGACAACGCCAGGTG
AGGTCGTTGCAAGAAGAAATGAGGCTGAGGCAAGAGGCCGTGAGAGCGGC
GGAAGCGTCGCTCACCGACCGAGCAGCCGCCGCGGAAAACGCCTGCCGAG
ATGCGGACAACCGGCGCCGGGCGGCAGAAGCTGCAGCAGTGTCGGCGGAG
GAGAAAGCACACAAGTCCCAGGGAGAGGTGTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6177:5604..7489+

>mRNA_H-paniculata_contig6177.13903.1 ID=mRNA_H-paniculata_contig6177.13903.1|Name=mRNA_H-paniculata_contig6177.13903.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig6177:5604..7489+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCTACAGGAGACCTTGGAGCGTGTGAGGCGAGAGGCTGACAGACGGGA
GGATGACGCGCGGGACCGGCAGGAGGACGTACGTAAAAGCAGCTACAGGA
GACCTTGGAGCGTGTGAGGCGAGAGGCTGACAGACGGGAGGATGACGCGC
GGGACCGGCAGGAGGACGTACGTAAAAGATGGAAAGATGCTGTTGCTCGC
GCGGAGGCTCTGCAAGCCGAGGCTCACGAGTCCACGACACCCCTTCTCCG
GCAGATGGAAAGATGCTGTTGCTCGCGCGGAGGCTCTGCAAGCCGAGGCT
CACGAGTCCACGACACCCCTTCTCCGGCAGGTGAGGTCGTTGCAAGAAGA
AATGAGGCTGAGGCAAGAGGCCGTGAGAGCGGCGGAAGCGTCGCTCACCG
ACCGAGCAGCCGCCGCGGAAAACGCCTGCCGAGATGCGGACAACCGGCGC
CGGGCGGCAGAAGCTGCAGCAGTGTCGGCGGAGGAGAAAGCACACAAGTC
CCAGGGAGAGGTGTGGTGAGTGAGGTCGTTGCAAGAAGAAATGAGGCTGA
GGCAAGAGGCCGTGAGAGCGGCGGAAGCGTCGCTCACCGACCGAGCAGCC
GCCGCGGAAAACGCCTGCCGAGATGCGGACAACCGGCGCCGGGCGGCAGA
AGCTGCAGCAGTGTCGGCGGAGGAGAAAGCACACAAGTCCCAGGGAGAGG
TGTGGTGA
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