mRNA_H-paniculata_contig6173.13896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6173.13896.1
Unique NamemRNA_H-paniculata_contig6173.13896.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: D8LKM8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM8_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 7.360e-72
Identity = 127/206 (61.65%), Postives = 147/206 (71.36%), Query Frame = 3
Query:  906 QPREVHYQCVACGKSYSAMVAGNPLWALVKQQCPVCHKMQIPRVDILNPTNNIEGHVSLLTEACAEYGTNGDDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQ 1523
            +PREV YQC AC  SY+A V+GNP W LV+Q+CP+CHKMQIPRVDILNPTNN+E H++ LTE  ++    GD SC DWDGETS++NS                         G G        GPTLDS+QAAKLLVLMCHARHCPG HRS+RLAEVCRSVKFLMLHLRDCDG+T  G PCP+PWC PC SLLHHL+QCP+S  C+
Sbjct:  327 EPREVRYQCGACAASYAATVSGNPWWLLVRQECPICHKMQIPRVDILNPTNNVESHIAFLTENASD----GDGSCMDWDGETSDENS---XXXXXXXXXXXXXXXXXXXXXXGSGL-------GPTLDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCMSLLHHLIQCPESTGCK 518          
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: A0A6H5KT72_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT72_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 9.150e-66
Identity = 122/199 (61.31%), Postives = 140/199 (70.35%), Query Frame = 3
Query:  981 WALVKQQCPVCHKMQIPRVDILNPTNNIEGHVSLLTEACAEYGTNGDDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQVCNPLHLPSPLRALRMMN 1577
            W LV+Q+CP CHKMQIPRVDILNPTNN+E H++ LTE  ++    GD SC DWDGETS+DNS                         G G        G  LDS+QAAKLLVLMCHARHCPG HRS+RLAEVCRSVKFLMLHLRDCDG+T  G PCP+PWC PCTSLLHHL+QCP+S  C+VC+P HLP PL+ LR +N
Sbjct:  477 WLLVRQECPTCHKMQIPRVDILNPTNNVESHIAFLTENASD----GDGSCMDWDGETSDDNS---XXXXXXXXXXXXXXXXXXXXXXGSGL-------GTILDSDQAAKLLVLMCHARHCPGNHRSARLAEVCRSVKFLMLHLRDCDGKTRNGDPCPMPWCEPCTSLLHHLIQCPESTGCKVCDPEHLPPPLQQLRALN 661          
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: A0A7S1TU47_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU47_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.620e-46
Identity = 91/225 (40.44%), Postives = 128/225 (56.89%), Query Frame = 3
Query:  903 LQPREVHYQCVACGKSYSAMVAGNPLWALVKQQCPVCHKMQIPRVDILNPTNNIEGHVSLLTEACAEYGTNGDDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQVCNPLHLPSPLRALRMMN 1577
            L PREV YQC  C ++Y+     NP WAL  ++C  C K Q+PR+DI +PTN I+ ++  L+        N            ++++ D D S D +     S M++                    +  E+++KLL+L+CHAR CPG+HRS R AEVC+S+K+LMLH+RDC GR   G PCP  WCRPC +LL HLV+C D   C +CNP +LP  L+ L+ +N
Sbjct:   29 LLPREVKYQCAVCNEAYTVTFNYNPWWALRLEECMHCKKRQVPRLDISHPTNQID-YLPALSAVAEAMQLN-----------QAQEDKDNDISTDTE-----SDMNDEF-----------------NMSPEKSSKLLILICHARTCPGKHRSRRHAEVCKSIKYLMLHIRDCSGRLPDGQPCPFEWCRPCKNLLSHLVKCFDPNTCAICNPWNLPRSLQELKTLN 219          
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: A0A6H5KVY2_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVY2_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.660e-44
Identity = 104/237 (43.88%), Postives = 134/237 (56.54%), Query Frame = 3
Query:  867 KRRRSSSLSIALLQPREVHYQCVACGKSYSAMVAGNPLWALVKQQCPVCHKMQIPRVDILNPTNNIEGHVSLLTEACAEYGTNGDDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQVCNPLHLPSPLRALRMMN 1577
            +R+R  SL+  L  PR V Y+C  C +SYS+ +A NP W+L   +CP CH+MQIPRVD  +   +++     +   CAE G  G DS                    E+ G AA     + G+ + G     L T        QA++LLVLM HAR CPGRH + + AEVC+S KFLMLH+RDC G T  G PC   WCRPC SLL HL++CPD   C++C PL LP PLR LR +N
Sbjct:  664 QRKRQRSLAPVLSAPRTVSYECSLCKESYSSEIASNPWWSLFLHECPRCHRMQIPRVDAASAAVSVD----YIHAVCAEEGE-GCDSDGXXXXXXXXXXXXXXXDDREREGIAAFDTDIIAGDSQAGCKEGRLST-------FQASRLLVLMSHARTCPGRHANPKHAEVCQSTKFLMLHMRDCTGHTASGDPCEHRWCRPCKSLLSHLIRCPDPNTCRICTPLDLPGPLRQLRDLN 888          
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: A0A7R9YGR4_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGR4_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.450e-44
Identity = 95/227 (41.85%), Postives = 128/227 (56.39%), Query Frame = 3
Query:  903 LQPREVHYQCVACGKSYSAMVAGNPLWALVKQQCPVCHKMQIPRVDILNPTNNIEGH--VSLLTEACAEYGTNGDDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQVCNPLHLPSPLRALRMMN 1577
            L PREV YQC  C + YS     NP WAL  ++CP C+K Q+PR+DI +PTN I+ H  +S + EA +    N        DG+ +E N+D                S+L  E               +L  ++++KLL+L+CHAR CPG+HRS R AEVC+S+K+LMLH+RDC GR   G  CP  WCRPC  LL HLV+C +   C +CNP +LP  +  L  +N
Sbjct:  269 LLPREVKYQCAECNEPYSVTFNYNPWWALRLEECPHCNKRQVPRLDISHPTNQIDYHPALSAVAEAMSLSQAN--------DGKDNEINTD--------------TESDLNDEF--------------SLSPDKSSKLLILICHARTCPGKHRSKRHAEVCKSIKYLMLHIRDCSGRLPDGQSCPFEWCRPCKKLLSHLVKCFEPNTCAICNPFNLPRSMEQLMTLN 459          
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: D7FUA8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA8_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 1.480e-41
Identity = 100/243 (41.15%), Postives = 132/243 (54.32%), Query Frame = 3
Query:  867 KRRRSSSLSIALLQPREVHYQCVACGKSYSAMVAGNPLWALVKQQCPVCHKMQIPRVDILNPTNNIEGHVSLLTEACAEYGTN------GDDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQVCNPLHLPSPLRALRMMN 1577
            +R+R  SL+  L  PR V Y+C  C +SY + +A NP W+L   +CP CH+MQIPRVD  +   +++     +   CAE G        G +SC+D D + ++D       G E+ G AA     + G+ + G     L T        QA++LLVLM HAR CPG H + + AEVCRS KFL             G PC   WCRPC SLL HLV+CPD   C++C PL LP PLR LR +N
Sbjct:  449 QRKRQRSLAPVLSAPRTVSYECSLCKESYPSEIASNPWWSLFLHECPRCHRMQIPRVDATSAAVSVD----YIHAVCAEEGEGCDSDGYGSESCSDSDDDVTDD-------GREREGIAAFDTDIIAGDSQAGCKEGRLST-------FQASRLLVLMSHARTCPGHHANPKHAEVCRSTKFLXXXXXXXXXXXXNGDPCEHRWCRPCKSLLSHLVRCPDPNTCRICTPLDLPGPLRQLRDLN 673          
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: A0A7S2KXT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KXT5_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.020e-38
Identity = 97/241 (40.25%), Postives = 123/241 (51.04%), Query Frame = 3
Query:  876 RSSSLSIALLQPREVHYQCVACGKSYSAMVAGNPLWALVKQQCPVCHKMQIPRVDILNPTNNIEGHVSLLTEACAEYGTNGDDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPT-------GGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQVCNPLHLPSPLRALRMMN 1577
            R SS   A    R+V Y C  C ++Y A    NP WAL ++ C  C K QIPR+DI  P N IE H +LL  A A+ G +GD    +              S    GG     + N  G   G  S +S P         GP L+S  AA+LLVLM HA  CPGRH++ R  +VC SVK+LMLH+RDC G    G  CP PWCR    LL+HL+ C    +C++C P  LP  L  +  +N
Sbjct:  521 RGSSSHSAPPSSRDVEYICALCNETYRAECTANPWWALTQEPCLKCGKAQIPRIDISAPANTIEYHPALL--AHADEGNDGDSDARN-------------NSSSVSGGGMHMDVGNRGGYDSGSDSEDSDPGEDFGKVYAGPKLESADAAQLLVLMAHASICPGRHKNERHRQVCLSVKYLMLHVRDCPGTISSGDLCPFPWCRKVKHLLYHLISCSKPNECRICRPRSLPKKLIKMAKLN 746          
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: W7U3G5_9STRA (TAZ-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G5_9STRA)

HSP 1 Score: 159 bits (402), Expect = 9.070e-37
Identity = 92/210 (43.81%), Postives = 112/210 (53.33%), Query Frame = 3
Query:  906 QPREVHYQCVACGKSYSAMVAGNPLWALVKQQCPVCHKMQIPRVDILNPTNNIEGHVSLLTEACAEYGTNGDDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQVCNP 1535
            Q R+V YQC  C +SYSA  + NP WAL KQ+CP C K+QIPR+DI  P N ++ H +LL E        GDD       E       G   G+E  G       + VG    GG        G      QA+++L LM HAR CPG H S     VC S K+LMLH+RDCDG+T  G  C   WCRPC  LL HLV+C +S QC +C P
Sbjct:  437 QVRQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAEE-------GDDXXX---XEGLGLGGSGLVPGEEFRGMGKGGEDSAVG----GGIGVPEEEDGQAFSPAQASQILELMSHARTCPGHHHSEAHRAVCTSTKYLMLHVRDCDGKTLDGEACGFSWCRPCKHLLGHLVRCYESEQCSICRP 632          
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: A0A7S4AF96_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AF96_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.930e-36
Identity = 90/256 (35.16%), Postives = 128/256 (50.00%), Query Frame = 3
Query:  909 PREVHYQCVACGKSYSAMVAGNPLWALVKQQCPVCHKMQIPRVDILNPTNNIEGHVSLLTEA-------------------------CAEYGTNGDDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQVCNPLHLPSPLRAL------RMMNHR 1583
            PR V Y C  C ++YS+    NP WAL + +CP CHK Q+PR+DI +P N IE H +LL+                            ++     +D  ++ D + SE + D    G  +     S + ++    R    +      GP   +E AAKLL+L+ HA  CP +H+S +  ++CRSVK++MLH+RDC G T     CP PWCR    LL+HLV C +  QC +C+P  LP  L+ L      RM  HR
Sbjct:  144 PRVVEYICSQCSEAYSSNCEYNPWWALAQHKCPKCHKTQVPRIDISSPANTIEYHPALLSHLEDGGRGGGGTIPPNGAQAVVPAMPIVSQIPVGANDVNSESDSDLSELSDDNISIGSLKAAELESDLQSMTPAERAEHETFGSEYEGPVFPNEHAAKLLILIGHAATCPCQHKSEKQRDICRSVKYMMLHVRDCPGTTSTFDVCPFPWCRKVKHLLYHLVACAEPDQCTICSPSDLPKGLKELVGLNAHRMKKHR 399          
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Match: A0A448ZEC8_9STRA (TAZ-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEC8_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.270e-34
Identity = 93/256 (36.33%), Postives = 126/256 (49.22%), Query Frame = 3
Query:  909 PREVHYQCVACGKSYSAMVAGNPLWALVKQQCPVCHKMQIPRVDILNPTNNIEGHVSLLTEA-------CAEYGTNG------------------DDSCADWDGETSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQAAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPCPLPWCRPCTSLLHHLVQCPDSGQCQVCNPLHLPSPLRAL------RMMNHR 1583
            PR V Y C  C ++YS+    NP WAL + +CP C K QIPR+DI +P N IE H +LL+              +NG                   D  ++ D + SE + D    G  +     S + ++    R    +      GP L  E A+KLL+LM HA  CP +H+  +  +VCRSVK++MLH+RDC G T     CP PWCR    LL+HLV C +  QC +C+P  LP  L+ L      RM  HR
Sbjct:  799 PRVVEYLCSQCSEAYSSTCEFNPWWALAQHKCPKCGKTQIPRIDISSPANTIEYHPALLSHLEDGGRGNAGSIPSNGVRAVVPAMPIVSQIPDGASDVNSESDSDLSELSDDNISIGSLKAAELESDLRSMTPAERAEHETFGSEYKGPVLSDEHASKLLILMGHAATCPCQHKLEKHRDVCRSVKYMMLHVRDCPGTTSTFDVCPFPWCRKVKHLLYHLVSCKEPDQCAICSPKELPKGLKGLVGLNGHRMKKHR 1054          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6173.13896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LKM8_ECTSI7.360e-7261.65TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KT72_9PHAE9.150e-6661.31TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S1TU47_9STRA4.620e-4640.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6H5KVY2_9PHAE1.660e-4443.88TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7R9YGR4_9STRA2.450e-4441.85Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
D7FUA8_ECTSI1.480e-4141.15TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2KXT5_9STRA3.020e-3840.25Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
W7U3G5_9STRA9.070e-3743.81TAZ-type domain-containing protein n=3 Tax=Monodop... [more]
A0A7S4AF96_9STRA4.930e-3635.16Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZEC8_9STRA1.270e-3436.33TAZ-type domain-containing protein n=1 Tax=Pseudo-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6173contigH-paniculata_contig6173:5000..12313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score261.5
Seed ortholog evalue6e-67
Seed eggNOG ortholog2880.D8LKM8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TAZ zinc finger
EggNOG OGs2BJCE@1,2S1FW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size3169
Cds size1155
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930698.0116947-UTR-H-paniculata_contig6173:4999..55471622930698.0116947-UTR-H-paniculata_contig6173:4999..5547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6173 5000..5547 +
1691481411.3650994-UTR-H-paniculata_contig6173:4999..55471691481411.3650994-UTR-H-paniculata_contig6173:4999..5547Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6173 5000..5547 +
1622930698.132334-UTR-H-paniculata_contig6173:10847..123131622930698.132334-UTR-H-paniculata_contig6173:10847..12313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6173 10848..12313 +
1691481411.438254-UTR-H-paniculata_contig6173:10847..123131691481411.438254-UTR-H-paniculata_contig6173:10847..12313Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6173 10848..12313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930698.0424397-CDS-H-paniculata_contig6173:5547..61021622930698.0424397-CDS-H-paniculata_contig6173:5547..6102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 5548..6102 +
1691481411.3742125-CDS-H-paniculata_contig6173:5547..61021691481411.3742125-CDS-H-paniculata_contig6173:5547..6102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 5548..6102 +
1622930698.068583-CDS-H-paniculata_contig6173:6791..68781622930698.068583-CDS-H-paniculata_contig6173:6791..6878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 6792..6878 +
1691481411.3869338-CDS-H-paniculata_contig6173:6791..68781691481411.3869338-CDS-H-paniculata_contig6173:6791..6878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 6792..6878 +
1622930698.0847926-CDS-H-paniculata_contig6173:7593..77761622930698.0847926-CDS-H-paniculata_contig6173:7593..7776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 7594..7776 +
1691481411.4048889-CDS-H-paniculata_contig6173:7593..77761691481411.4048889-CDS-H-paniculata_contig6173:7593..7776Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 7594..7776 +
1622930698.1037376-CDS-H-paniculata_contig6173:9158..93081622930698.1037376-CDS-H-paniculata_contig6173:9158..9308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 9159..9308 +
1691481411.4175992-CDS-H-paniculata_contig6173:9158..93081691481411.4175992-CDS-H-paniculata_contig6173:9158..9308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 9159..9308 +
1622930698.1185575-CDS-H-paniculata_contig6173:10667..108471622930698.1185575-CDS-H-paniculata_contig6173:10667..10847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 10668..10847 +
1691481411.4279788-CDS-H-paniculata_contig6173:10667..108471691481411.4279788-CDS-H-paniculata_contig6173:10667..10847Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6173 10668..10847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6173.13896.1prot_H-paniculata_contig6173.13896.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6173 5548..10847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6173.13896.1

>prot_H-paniculata_contig6173.13896.1 ID=prot_H-paniculata_contig6173.13896.1|Name=mRNA_H-paniculata_contig6173.13896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp
MPVTQPAQSTAQSDKAQPLSAFLDKSSQEAATATAVGSHGTVKTPTASAT
PETRGRTVESATAGKTISRTEDVTVVVPAAAAAGATSLSSGIEGARMTLG
SPPRPVKRRRSSSLSIALLQPREVHYQCVACGKSYSAMVAGNPLWALVKQ
QCPVCHKMQIPRVDILNPTNNIEGHVSLLTEACAEYGTNGDDSCADWDGE
TSEDNSDGDCSGDEQGGTAASAMSNLVGEPRGGGSSNSLPTGGPTLDSEQ
AAKLLVLMCHARHCPGRHRSSRLAEVCRSVKFLMLHLRDCDGRTDVGHPC
PLPWCRPCTSLLHHLVQCPDSGQCQVCNPLHLPSPLRALRMMNHRGGYPW
QTAQSQDCSTSSSSTNSTNAIAVPKPVPSNCPAF*
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mRNA from alignment at H-paniculata_contig6173:5000..12313+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6173.13896.1 ID=mRNA_H-paniculata_contig6173.13896.1|Name=mRNA_H-paniculata_contig6173.13896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7314bp|location=Sequence derived from alignment at H-paniculata_contig6173:5000..12313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAGGAGGAGAAGAGTCGGAGCTACGGGCTTCGCCCTCTTCATGTACT CTTGTAAAAGAAGAGCCTTGGGAGATCGAGTCCTTGACAACACCGGCGTC TCCGCCAACGCCGCCGCTGTTGGATCAGGACTCTTCTCGGGTGTCGTCGT CGTCGTCATTGCTTGGCGTACTCGATGGCCAAGGAGCTGCAACAGATTCC CCTGCTGACCGCACAGATGGCGATAGTAACCCCGCCGCCGCCACTGGCAT CGCGGCCGGGTCTTCCTCTACTCACGATGACGCTGCTGGCGATAATGGTC TAGGTAGCGGCTCCTCCTCTTCGTGTGGCGGCGGGGCTCTGCAGACTGCT AGTAGCTTGCCCGTCGCTAGTTGGTCACAGAACGCTGCTGCTTGTTGTTC TTCACAGAACGGGCGTCCGGAACAGGCATGCGACTGTTCGGGGACATGCT CCTCGAGACCCGTCCCTCCAACAACGTCGTCCTCCTCCTCTTCCTCTTCC TCCTCTATACAGCAAGCGAAAACTCGATTATTTTCTGCATCAGCAACAAT GCCAGTTACCCAACCGGCCCAATCGACCGCGCAGTCGGACAAAGCCCAAC CGCTGTCGGCATTCCTAGACAAATCATCGCAGGAGGCGGCGACGGCGACG GCGGTGGGTTCACACGGGACAGTGAAGACGCCGACGGCCAGTGCAACGCC CGAGACGCGAGGCCGTACGGTAGAGTCAGCAACTGCAGGAAAAACTATAT CAAGGACAGAGGACGTGACAGTGGTAGTACCGGCGGCAGCGGCGGCGGGA GCTACGTCTTTGAGCAGTGGAATTGAGGGGGCGAGAATGACGCTAGGATC GCCGCCGCGACCAGTGAAGCGACGGAGATCATCGAGCCTATCTATCGCGC TGCTGCAGCCTCGCGAGGTCCATTATCAATGCGTGGCGTGTGGCAAGAGT TATTCAGCGATGGTGGCAGGTAATCCGTTGTGGGCGCTCGTGAAGCAGCA ATGTCCTGTGTGCCACAAGATGCAGATTCCCCGTGTGGACATCTTGAACC CCACCAATAACATCGAGGGACACGTGTCGCTGTTGACCGAGGCTTGTGCG GAGGTGAGGGGAAACAAGAAAGCAAAAGACGAAGACCCAGTGGTTCACTT TTTAGTACATGAAGTTGTATAATATATAGTTGGTCTGTCTATATATTTCC TCTATCTTATGGCGTGGCAAGAACAAGCACTATTTTTTTAACACCTTTTA TTGCTCTCCAAGGTCTGCTGCCCTTCCAGAGCAATACCCGCACGGTTGTT CTAGTTGCCGTTAGTGTCAGTATTAGCTCCAACGCTGCACTGATACGATT GCATAACGAGCCAAAATCTTCTTCGACTGATGATTTCAGACAGTCTCGCC TTCTTGATCCGCACCGTCGTGGTCCAGCTTGTGTGTAAGACCAATGCTGC CAGAGGGGTGTAGGCACAGTTGTTCAAATGATGGTGTGTGACGGTTTTGT GCCTCTGGGAGCTTCTGTGACTGTGGGTCTGTCCGGAGGATGATAGTGAT GCGTTGAAGGATATTGCCATTCAGTTAATGTCTGACAGAGATACCAAGAA TTGTCATGTTGACAATGCACGTATTGTCATTATCCACGGGGGCTCACCTA GTGATAATACTTGCCTGTGTGTGTTGTGCGTGTGTCGTAACGTGTATTGG TTTCCATTTGGTCCTCCACGTGATGAGTCAAAAGAGATCGACGAATGCCT TCATCTCGACAATTATTTGTTTTCCTTGGCTTTTTTTCCCAGTACGGCAC CAACGGGGATGACAGCTGTGCCGATTGGGATGGAGAAACGAGCGAGGATA ACTCGGACGGTGACTGCTCCGGGGATGAGGTAAAGCAGACTCGACTCAAA TCGGTCCTGGCTTGTTTGGGAAGACATGATGTATAACGCGACCATGAAAA GAAGCGTAGATATGACCAAAAAAAAAAAAAAATCGCCTCGATTTTTTTTC CGTTTCTTTTGTCGATTTTTAAACATTTTTATCGAAATGTAAACTTGGTA ACCACCACCCCCCTAGGGCACCGGTTATGTGATATACTTACTACAGTAGC CACAGTACATAGGTGTAAATCGCGTATAGAAACATTTGCAACTGTTAACA AGGGTGATCATAGATGAATGATGACCAAGTGGCATGCTACGGGGTAAATT CATAGTAAGCGTATGTAAAGTAGTGGACCCGCTGTGAGGCCGTCTAATGG CCAGCGAAAAGAACTCTACCTTATTCCCATCCTATCCGGCCTTGAAAACC TGATATAAAACCGCTCGTCCCTACAGCAGATAAAATCGCCAAAGACAATC CGTGGGTTAGGCGGGGCTTGGCTTGGACCACGTGAAATGACCACGGGAAA ATCCTGCATTCTTAAAAGCTGAATAGCAGCAGCTGCATCTGTAAAGCAAC GGGGAAACAATTATATTCAGTTACCGAAAAAACAAAAAAAACGCTCCTGA TTATTATGTTCCTCCCGTAATAGTGGTTTTTGTCAGCCCTTGAAATTTGC GTTTTGCTTCTTTTGTACGGACTTCCCTATTTTCCATTTCCCAGCAAGGG GGTACAGCTGCGTCGGCAATGTCCAACCTGGTAGGGGAACCCCGCGGCGG TGGGAGCTCAAACAGTCTGCCCACCGGCGGCCCTACGCTTGACTCGGAGC AGGCGGCAAAACTTCTGGTGCTCATGTGTCACGCCCGACATTGTCCGGGG CGCCACCGCTCCTCAAGACTCGCCGAGGTGCGTGCGTTTGATTAGACACG CCCACCGGCTCAATCCATCGTCGTCGGATTTTTGCTGCTTGTGTGTGTCG TATGTTTCTGTAGAGTCAATGGCGGAATAGCCTCCACGTCATTTTAAGCA GGGAAAGCGTTTCTTTGTTCCCGTCTGCATTTGCCAGTGTACTGTAAAAG TGGTGTGCGCTCTCATTATGCCGAACACATCGACTTTACTTGTGGCGCAG AGGAAGAAGTACAAGCGTTTGGTAAGTGTTGGCAATGGAAATTATCGAGA AGCTAGAATCAGATAGACTATAAATGTGCGCTGTTTCCGAAATGCCTTCC GATGTGTATATTATCAGGATTTAGTGGCGGCTCGAGGTTCGGCTAATCTT GAAGTTCTTTTGTTTTGTTTTTTTTCGATTTTTTCGATTTTTTTTATATT GGGAAAATACGAAAAAGGGCGGAAATAGTGTTTGTTTTTCACTCCAGTGC TCTTTTTGCACCGCGCGCTTACCCGGTGGAAGTCGCCAATCTTCACGAAT AGTTGGGGGTTCAATGCCCAAAAACATCTCCTAACGTATTTTGCGGGTTT GTTCATGGCATTTGTTGATTTTGTCGTCGGGGGGGGGTAGGGGTAGGTAG ATGACACGTCATGTCAGGGGAGATAGTATTGCTCTCTTGAAGATGGCAGA CTCGGACACAAAAACCAAGTCAGTATATATTTGTACCTTTTAAGATGTGG GTAAGGAAGTGTATAGCACTGGTGAAAAAGCTGGCCAACCTCCGTGATAA CGTTGGTACTTGCATTGTCCAACGTGCCCGCAGTCTGGGAGGTTGATACA GGTTGGCGATGGTGGAAAGGGATAAGTTGACAGCCTTCATGATGTGGTAA CATCCAACGTTGTGGGTAGAGGTTGTCCGATTTGGGGAACCTCCATGATA ACAGTGGGAACGGTGCCCGCCCTCCTTAGTTGTATCGATTTTGTTGATGA CTACATATATCTAACCAAAGTAGATATGGTGTAGGTAACACAAACCCCAG CATGTAGGTCCACGTAAATTCTGACAGTGCGAAGAGCAGGTGAACTGCTG TGGTGGTCAGTAAGGGTTCATGAATGCGATCAGGTGACGAGTATGCATTG TGAGATTATGACGTCTACGGTGTGCTTGTTATACATGCGAGTGATACGGT TACTATACCTGCCATTAATATCACCCCCCCCCCCCACCTTGATTTTGTCA CCGGTCCCTTGCCTCCCGCGGTCCCCTCCCCTCGAGTCTTCCGTCAAATC CATAAATGCATGCTGCAAACTGTACCTCCCGCGTATTTCTTTGATTATTA CAACCTGTATCTCTCTCTTTTTTGCGTTCAATCAATTCAATAAATAATGA CTTATGCAGGTTTGTCGCAGCGTCAAGTTCCTCATGCTTCACTTGCGTGA CTGCGACGGAAGGACCGACGTGGGACACCCGTGCCCTTTGCCTTGGTGTC GGCCGTGTACATCCCTACTGCACCACCTCGTCCAGTGTCCAGACTCCGGC CAGTGCCAGGCAAGACATTATATTATATTATACTATATTTGGTTCTAGTA GAGTACAGGCCCAGTCCCCCGCTTGTGCCTTCGCGCACCTATGAAAGAGG CTGTTTCGGAGCTAAGAAAAATATATGCCCCACAGTTTTCAGCGGTGGAG TCATTGCACATAGAACCATCCCCCCCGCCCTCTCCACCGTCTGTGCTGTA TTTACTGATTGTACTGAACTGTGTTTCTAAAAGCGGCAGCGCCCTATGCC CGTGATCGCTCCACAGGGTTTGTTTCCCCGTGTTTTCGGGTGATGATTGG GGTTAATGGAGTAGATGAGAACCTGCCCTCGAAGAAAAAAAACAGTCTTG AGGTTTGGGAAACTTCAAGGGCCTCAACTGGTTCAAGTCTAGGCGCCGGT AGCCAAGTTGAGAAGAAAGGGCGAAAATAGAGTATATTAGTTCTTTTCCC AAGACAAGGAGAAAAATTGACTATGACTGCTTGTTTTTTTCATGACCGGG CCTGGTACGGTACAGCATGCCTTACCTCTGATTTTTGTTGTTGTTGTTAT TTTCAACAACACGACTTAAATCATGCATTTTTGACCCGCGGTCAACGAAT CAGAAATCCCAGAAATCCAAACCCGCACCTGCTCGTACGGACTGACTCCT CCACGCCTAGACGACGGCACTTCGAGATTGACATTTCGAGGACCTAGCAT TTCGTACAGTGGGTGGGTAGCCCGTTTTTAAACGTGTCCGATTAAAGGCG ACACTAAATTTAACTCGGTTCAAACCGGCTTGTCATCAAACCAAAATTCC GTACATTTCCTATACAACACGGTAATAATACAAAAAGAGGCTTCATTTAA AGCAGGCATTTTTGGTGTGTCATCATTCCCGCCTCAAAGCGGGGTACCCA CTGCAAATGCGCCACTCATTAGTTATCTTGACCGCGGTTGGAAGTGAAAA TGCATAAAAAAGAAGAAAGCAACGTGGATCATGGATAAGGAAGCCCTGAA TTGGTCATTCTCGTGTCATAGGGTTGAGGGGCTTGTTCGCTTAATCATGA TGTCTTAATTTTTTTTGCATTTTGCGCATCACGGTGTTGCCGTTTCCGTG AAGAGTATATTTCTGTCTGATGACCCACGGGATTTGAGTAAATAGCCAAC ATCAAATGTGACTACGATAAATTTGAACGATTTTTTTTTTTTTTTTTTTT AGCTCCGGTTCAGTCACGCGAGTTAGATTCAATCTGTTTTTGCTGCGCAT GACTACACGGAGTTGATGAATCCTCTCTGGTTTTAGTGACGTTCCTCTTC CTTTTTTTTTTTTTTTTTTGGGGGGGGGGACGCCCACTCAACCGCCATCT GGGATTTTTCATACTCAGGTTTGCAATCCGCTGCACCTACCGTCGCCGCT GCGAGCCCTACGCATGATGAACCATCGTGGGGGATACCCATGGCAGACTG CACAAAGCCAAGACTGCAGCACCAGCAGCAGCAGCACCAACAGCACCAAC GCTATTGCCGTGCCGAAGCCTGTACCTTCCAATTGTCCTGCCTTCTAAAA TCCGGATTCTCCACCCTCACGGTCGTTGTTTTAAGCGACGGCTTGCAACA TGAGGGAAGGAATTAGGGGGCGTTGTTGTCGTGGAATGACATGGCATGAC ATATTATGCTGTAAACGCCGTGTATCACTTCGCCTAGTGTAAACAGACCA CGTATTTCGCTCCACCTAGTGTAGGAAGTAGGTGGTGCCGTTGTTACGGT CGTTCATTATGACTGGCGTTGGCACGCACGCACGCACGTAATCCGTCTGC CCAAACGATGTGACCCCCCAACATGTTGACCGTTTTTTTGTTTCGAAGGT GTTTTTGTTGTCGCGACGCGCGATGGATGGGTGCTCACTTCGGATTGCGT TGTTAACACATGACGCCTGAAACATGAAAAACCGCACGTTCTTTTTCTGA TGGCAACTAACTAGCGTACAGGTATATAGTTAGCGAGAGAAAAATACGGG AAAATGTGTGCCCTTAGTTTAGTGATTGATCCTTTTCTTTTCTTTTTTTC CCAGGTTTTGGGTAGTCCATTATAGGTGAGGCAAGTGCTCTATTTTGTGC TATTATCCAGTCGACCGGTTTTGTTTTGTAGAAAGAGCTAGGTTGTACGA GAGTTGTTGACGTGCCTGAAAGTGCTCTATTAATAATGATTGATTTTTCT CTATAGACATGAAAGAGTAGACAGCCCCACCCCAAAGTAGTACCTCGGAG ATCTCCTTTTCTCTGGGACGGGCGAACTTCAGAGTCAGGGTGGGGTTGCG GGGATAAAGTTACTGTGATGGTTAGGTAGCATCCGCTCCCTCATAAGAGA CGAAGATCTAGGTTTCAGGTTGCCTATTCCATGGTCCATGGGTGCTTGCA TCTAGAATGAAAATTACTCGAATTTTGCTATAGGGAGGAAGACCCTCACG ACCGGACAATTTCTTGAATTGGTGTCGCGTGCAGGCTGGGAGTATTGGTT ATTGTAACCCATTTTCTAATGAGAGGGGCAATATTGTATACAGTAGTAGT AGTGTATCAGCGCCTTGGCATAAGCCGCGTTGTTACTGCTTCGTTTCGAC GTACAGCTACATAGATTTTCTTGTGGTGTTGCATACGTGGATTTGTCACT CAATCTGTTCATTAATCTCTGATGTATTGCTTTCTATTTTGTACGATTTG TCGTGAACGAGCGTATAGAGAGAGGTTGAGAGGGTTGTGGGGCCTGCCGA GGTCGAAAAATCGGCGAATTCAATCTACTGGAAAGGAAAGCACATTACAA AAAATGTGACGTGGTCATGGCACCTACTTGAGTGACGATGAAACAGCAGG TGTACACCTCGGCATTCACCGGCTGGGGTCCAGATAAGTTCAATGCCGGC AGCCAAAGTGAAGACAATTTCGTGACAGTCTGGTTGACGTGGGGCGTGCC GCGGAGTTATTACAATCTTCTTTCTGCACGTGATACGTTTCATGCTTTCA GTCCACAAAAAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig6173:5000..12313+

>mRNA_H-paniculata_contig6173.13896.1 ID=mRNA_H-paniculata_contig6173.13896.1|Name=mRNA_H-paniculata_contig6173.13896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at H-paniculata_contig6173:5000..12313+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGTTACCCAACCGGCCCAATCGACCGCGCAGTCGGACAAAGCCCA
ACCGCTGTCGGCATTCCTAGACAAATCATCGCAGGAGGCGGCGACGGCGA
CGGCGGTGGGTTCACACGGGACAGTGAAGACGCCGACGGCCAGTGCAACG
CCCGAGACGCGAGGCCGTACGGTAGAGTCAGCAACTGCAGGAAAAACTAT
ATCAAGGACAGAGGACGTGACAGTGGTAGTACCGGCGGCAGCGGCGGCGG
GAGCTACGTCTTTGAGCAGTGGAATTGAGGGGGCGAGAATGACGCTAGGA
TCGCCGCCGCGACCAGTGAAGCGACGGAGATCATCGAGCCTATCTATCGC
GCTGCTGCAGCCTCGCGAGGTCCATTATCAATGCGTGGCGTGTGGCAAGA
GTTATTCAGCGATGGTGGCAGGTAATCCGTTGTGGGCGCTCGTGAAGCAG
CAATGTCCTGTGTGCCACAAGATGCAGATTCCCCGTGTGGACATCTTGAA
CCCCACCAATAACATCGAGGGACACGTGTCGCTGTTGACCGAGGCTTGTG
CGGAGATGCCAGTTACCCAACCGGCCCAATCGACCGCGCAGTCGGACAAA
GCCCAACCGCTGTCGGCATTCCTAGACAAATCATCGCAGGAGGCGGCGAC
GGCGACGGCGGTGGGTTCACACGGGACAGTGAAGACGCCGACGGCCAGTG
CAACGCCCGAGACGCGAGGCCGTACGGTAGAGTCAGCAACTGCAGGAAAA
ACTATATCAAGGACAGAGGACGTGACAGTGGTAGTACCGGCGGCAGCGGC
GGCGGGAGCTACGTCTTTGAGCAGTGGAATTGAGGGGGCGAGAATGACGC
TAGGATCGCCGCCGCGACCAGTGAAGCGACGGAGATCATCGAGCCTATCT
ATCGCGCTGCTGCAGCCTCGCGAGGTCCATTATCAATGCGTGGCGTGTGG
CAAGAGTTATTCAGCGATGGTGGCAGGTAATCCGTTGTGGGCGCTCGTGA
AGCAGCAATGTCCTGTGTGCCACAAGATGCAGATTCCCCGTGTGGACATC
TTGAACCCCACCAATAACATCGAGGGACACGTGTCGCTGTTGACCGAGGC
TTGTGCGGAGTACGGCACCAACGGGGATGACAGCTGTGCCGATTGGGATG
GAGAAACGAGCGAGGATAACTCGGACGGTGACTGCTCCGGGGATGAGTAC
GGCACCAACGGGGATGACAGCTGTGCCGATTGGGATGGAGAAACGAGCGA
GGATAACTCGGACGGTGACTGCTCCGGGGATGAGCAAGGGGGTACAGCTG
CGTCGGCAATGTCCAACCTGGTAGGGGAACCCCGCGGCGGTGGGAGCTCA
AACAGTCTGCCCACCGGCGGCCCTACGCTTGACTCGGAGCAGGCGGCAAA
ACTTCTGGTGCTCATGTGTCACGCCCGACATTGTCCGGGGCGCCACCGCT
CCTCAAGACTCGCCGAGCAAGGGGGTACAGCTGCGTCGGCAATGTCCAAC
CTGGTAGGGGAACCCCGCGGCGGTGGGAGCTCAAACAGTCTGCCCACCGG
CGGCCCTACGCTTGACTCGGAGCAGGCGGCAAAACTTCTGGTGCTCATGT
GTCACGCCCGACATTGTCCGGGGCGCCACCGCTCCTCAAGACTCGCCGAG
GTTTGTCGCAGCGTCAAGTTCCTCATGCTTCACTTGCGTGACTGCGACGG
AAGGACCGACGTGGGACACCCGTGCCCTTTGCCTTGGTGTCGGCCGTGTA
CATCCCTACTGCACCACCTCGTCCAGTGTCCAGACTCCGGCCAGTGCCAG
GTTTGTCGCAGCGTCAAGTTCCTCATGCTTCACTTGCGTGACTGCGACGG
AAGGACCGACGTGGGACACCCGTGCCCTTTGCCTTGGTGTCGGCCGTGTA
CATCCCTACTGCACCACCTCGTCCAGTGTCCAGACTCCGGCCAGTGCCAG
GTTTGCAATCCGCTGCACCTACCGTCGCCGCTGCGAGCCCTACGCATGAT
GAACCATCGTGGGGGATACCCATGGCAGACTGCACAAAGCCAAGACTGCA
GCACCAGCAGCAGCAGCACCAACAGCACCAACGCTATTGCCGTGCCGAAG
CCTGTACCTTCCAATTGTCCTGCCTTCTAAGTTTGCAATCCGCTGCACCT
ACCGTCGCCGCTGCGAGCCCTACGCATGATGAACCATCGTGGGGGATACC
CATGGCAGACTGCACAAAGCCAAGACTGCAGCACCAGCAGCAGCAGCACC
AACAGCACCAACGCTATTGCCGTGCCGAAGCCTGTACCTTCCAATTGTCC
TGCCTTCTAA
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