mRNA_H-paniculata_contig6170.13893.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6170.13893.1
Unique NamemRNA_H-paniculata_contig6170.13893.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6170.13893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6170contigH-paniculata_contig6170:6900..7442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size502
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6170.13893.1prot_H-paniculata_contig6170.13893.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6170 7027..7397 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930697.5613666-UTR-H-paniculata_contig6170:6899..70261622930697.5613666-UTR-H-paniculata_contig6170:6899..7026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6170 6900..7026 -
1691481411.1035995-UTR-H-paniculata_contig6170:6899..70261691481411.1035995-UTR-H-paniculata_contig6170:6899..7026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6170 6900..7026 -
1622930697.6192064-UTR-H-paniculata_contig6170:7397..74421622930697.6192064-UTR-H-paniculata_contig6170:7397..7442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6170 7398..7442 -
1691481411.1489353-UTR-H-paniculata_contig6170:7397..74421691481411.1489353-UTR-H-paniculata_contig6170:7397..7442Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6170 7398..7442 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930697.5768552-CDS-H-paniculata_contig6170:7026..70631622930697.5768552-CDS-H-paniculata_contig6170:7026..7063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6170 7027..7063 -
1691481411.1211612-CDS-H-paniculata_contig6170:7026..70631691481411.1211612-CDS-H-paniculata_contig6170:7026..7063Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6170 7027..7063 -
1622930697.5930784-CDS-H-paniculata_contig6170:7104..73971622930697.5930784-CDS-H-paniculata_contig6170:7104..7397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6170 7105..7397 -
1691481411.1382837-CDS-H-paniculata_contig6170:7104..73971691481411.1382837-CDS-H-paniculata_contig6170:7104..7397Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6170 7105..7397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6170.13893.1

>prot_H-paniculata_contig6170.13893.1 ID=prot_H-paniculata_contig6170.13893.1|Name=mRNA_H-paniculata_contig6170.13893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MFPHSSPHTAHSLTTRTRRRPCINRRGAHDAFVSLPLQCCCQLLHNVDVQ
VPFDVLSPSITTSAWPGTTTNGNVMRTSPHGDTSVNCSGIVCIFISTEPR
KFDPRPLLS*
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mRNA from alignment at H-paniculata_contig6170:6900..7442-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6170.13893.1 ID=mRNA_H-paniculata_contig6170.13893.1|Name=mRNA_H-paniculata_contig6170.13893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at H-paniculata_contig6170:6900..7442- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCGTCCTCACCGCCGCCAAACGCGCCACCTGCAGTCGGCTGCAATGTT
TCCACATTCATCTCCACACACCGCTCATTCACTCACTACTCGCACACGCC
GCCGCCCGTGCATCAACCGTCGCGGCGCTCACGATGCCTTCGTTTCTCTG
CCTCTCCAATGCTGCTGTCAGTTGCTTCATAACGTCGATGTCCAAGTTCC
CTTCGACGTCTTGTCACCTAGTATCACCACATCAGCCTGGCCCGGCACCA
CCACAAACGGTAACGTAATGCGCACGTCGCCCCACGGCGACACTAGCGTC
AATTGTAGCGGGATCGTCTGCATCTTCATATCCACCGAGCGCCCCTCAGC
GACTTGCGCCGTCACGCCGCCGGTATAAGGCCGCGTAAATTCGATCCCCG
GCCACTGCTGTCGTAGCCGATGGTCTATGGTTTCCCACACCGCTATCACC
CCAGATCCTGAGTGCAGCAACACCTTCACATTCACCGGCCGCCCAACAAT
CCGAAGCAGCTTCAAACAGCTGGAAAAATGGCTTTCCAGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig6170:6900..7442-

>mRNA_H-paniculata_contig6170.13893.1 ID=mRNA_H-paniculata_contig6170.13893.1|Name=mRNA_H-paniculata_contig6170.13893.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig6170:6900..7442- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCCACATTCATCTCCACACACCGCTCATTCACTCACTACTCGCAC
ACGCCGCCGCCCGTGCATCAACCGTCGCGGCGCTCACGATGCCTTCGTTT
CTCTGCCTCTCCAATGCTGCTGTCAGTTGCTTCATAACGTCGATGTCCAA
GTTCCCTTCGACGTCTTGTCACCTAGTATCACCACATCAGCCTGGCCCGG
CACCACCACAAACGGTAACGTAATGCGCACGTCGCCCCACGGCGACACTA
GCGTCAATTGTAGCGGGATCGTCTGCATCTTCATATCCACCGAATGTTTC
CACATTCATCTCCACACACCGCTCATTCACTCACTACTCGCACACGCCGC
CGCCCGTGCATCAACCGTCGCGGCGCTCACGATGCCTTCGTTTCTCTGCC
TCTCCAATGCTGCTGTCAGTTGCTTCATAACGTCGATGTCCAAGTTCCCT
TCGACGTCTTGTCACCTAGTATCACCACATCAGCCTGGCCCGGCACCACC
ACAAACGGTAACGTAATGCGCACGTCGCCCCACGGCGACACTAGCGTCAA
TTGTAGCGGGATCGTCTGCATCTTCATATCCACCGAGCCGCGTAAATTCG
ATCCCCGGCCACTGCTGTCGTAGGCCGCGTAAATTCGATCCCCGGCCACT
GCTGTCGTAG
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