mRNA_H-paniculata_contig6170.13892.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6170.13892.1
Unique NamemRNA_H-paniculata_contig6170.13892.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5K836_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K836_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.250e-9
Identity = 26/38 (68.42%), Postives = 34/38 (89.47%), Query Frame = -3 
Query:  391 SEYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 504
            ++YSWG+SKQKFRR++NDEVPKHLH N+  S+CT+K L
Sbjct:   52 TKYSWGLSKQKFRRKINDEVPKHLHANIEKSLCTDKYL 89
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BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5KM16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM16_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.160e-8
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = -3 
Query:  391 EYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 501
            EYSWG SKQKFRR++NDEVPKHLH N+  S+C +K L
Sbjct:   29 EYSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYL 65
[Close]
BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5KG35_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG35_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.360e-8
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = -3 
Query:  391 EYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 501
            +YSWG SKQKFRR++NDEVPKHLH N+  S+C +K L
Sbjct:   47 QYSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYL 83
[Close]
BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.130e-7
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = -3 
Query:  391 EYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 501
            EYSWG SKQKFRR++NDEVPKHLH N+  S+C +K L
Sbjct:  548 EYSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYL 584
[Close]
BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.350e-7
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = -3 
Query:  391 EYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 501
            EYSWG SKQKFRR++NDEVPKHLH N+  S+C +K L
Sbjct:  894 EYSWGFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYL 930
[Close]
BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5KQB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.780e-7
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = -3 
Query:  391 EYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 501
            EYSWG SKQKFRR +NDEVPKHLH N+  S+C +K L
Sbjct:  480 EYSWGFSKQKFRRRINDEVPKHLHDNIEKSLCIDKYL 516
[Close]
BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 3.040e-7
Identity = 27/37 (72.97%), Postives = 31/37 (83.78%), Query Frame = -3 
Query:  391 EYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 501
            EYSWG SKQ+FRR+ NDEVPKHLH N+  SMCT+K L
Sbjct:  741 EYSWGFSKQRFRRKYNDEVPKHLHANIEKSMCTKKDL 777
[Close]
BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5JVH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH4_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 3.060e-7
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = -3 
Query:  391 EYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 501
            EYSWG SKQKFRR++NDEVPKHLH N+  S+C  K L
Sbjct:  285 EYSWGFSKQKFRRKINDEVPKHLHDNIEESLCIHKYL 321
[Close]
BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5L885_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L885_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 4.050e-7
Identity = 26/37 (70.27%), Postives = 31/37 (83.78%), Query Frame = -3 
Query:  391 EYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 501
            EYSWG SKQKFRR++NDEVPKHLH N+  S+C +K L
Sbjct:  663 EYSWGFSKQKFRRKINDEVPKHLHGNIEKSLCIDKYL 699
[Close]
BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Match: A0A6H5K769_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K769_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.160e-7
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = -3 
Query:  391 EYSWGMSKQKFRRELNDEVPKHLHQNMVASMCTEKIL 501
            EYSWG SKQ+FRR+ NDEVPKHLH N+  SMC EK L
Sbjct:  289 EYSWGFSKQRFRRKYNDEVPKHLHANIEKSMCREKHL 325
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6170.13892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5K836_9PHAE5.250e-968.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM16_9PHAE1.160e-870.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG35_9PHAE5.360e-867.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXL0_9PHAE2.130e-770.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L611_9PHAE2.350e-770.27Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB9_9PHAE2.780e-770.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5X3_9PHAE3.040e-772.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH4_9PHAE3.060e-770.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L885_9PHAE4.050e-770.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K769_9PHAE4.160e-772.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6170contigH-paniculata_contig6170:1388..2176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size695
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6170.13892.1prot_H-paniculata_contig6170.13892.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6170 1712..2168 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930697.4722826-UTR-H-paniculata_contig6170:1387..17111622930697.4722826-UTR-H-paniculata_contig6170:1387..1711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6170 1388..1711 +
1691481411.0687075-UTR-H-paniculata_contig6170:1387..17111691481411.0687075-UTR-H-paniculata_contig6170:1387..1711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6170 1388..1711 +
1622930697.516035-UTR-H-paniculata_contig6170:2168..21761622930697.516035-UTR-H-paniculata_contig6170:2168..2176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6170 2169..2176 +
1691481411.0941234-UTR-H-paniculata_contig6170:2168..21761691481411.0941234-UTR-H-paniculata_contig6170:2168..2176Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6170 2169..2176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930697.4844878-CDS-H-paniculata_contig6170:1711..17771622930697.4844878-CDS-H-paniculata_contig6170:1711..1777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6170 1712..1777 +
1691481411.0772254-CDS-H-paniculata_contig6170:1711..17771691481411.0772254-CDS-H-paniculata_contig6170:1711..1777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6170 1712..1777 +
1622930697.5013793-CDS-H-paniculata_contig6170:1871..21681622930697.5013793-CDS-H-paniculata_contig6170:1871..2168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6170 1872..2168 +
1691481411.085409-CDS-H-paniculata_contig6170:1871..21681691481411.085409-CDS-H-paniculata_contig6170:1871..2168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6170 1872..2168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6170.13892.1

>prot_H-paniculata_contig6170.13892.1 ID=prot_H-paniculata_contig6170.13892.1|Name=mRNA_H-paniculata_contig6170.13892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MKPGSMSRLLRRALYVFTFSIIQDFFRAHRGDHVLVQVLGHLVVELAPKL
LLGHAPGVLGFPPPPPPGGTSEIAAGCAHESPHTHEAPVLSIVQEHRRHP
IRTRHINPLSCGALSRCKLW*
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mRNA from alignment at H-paniculata_contig6170:1388..2176+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6170.13892.1 ID=mRNA_H-paniculata_contig6170.13892.1|Name=mRNA_H-paniculata_contig6170.13892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=789bp|location=Sequence derived from alignment at H-paniculata_contig6170:1388..2176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTCTTCCCCCACAAGGAAGCAGGCTACCGCAGTACAAGTACGTGCAAA
CGAGCGAATGGAGATGTAAGGTGTACAGCATGGCACTTGCCGAATGACAA
ATAACATTAGATCTCCAGTGCCACCGCTACTAGTTGACCGTCTGAAGCGA
ACCACCACTCTACTCGTACGTCATACTCATCCTATGACATAATATCGAAC
ACCACGCCCGGTAGGCCTGCCCATGCATTTCTATCCATTGTCCGCCCCTC
CCTATCAATGGTGCTCACGATACGAGTCGTGCGACTGCTAGTACTGGTTA
TTCTCCTACACGTATTGCTTGTCGATGAAGCCAGGCTCCATGTCAAGGCT
GTTGCGGAGAGCCTTGTACGTCTTCACCTTCTCGATCATATAATTGGACT
CGATATCGCCACCTTCTGAAGCTCCAAGTACGCCCGGCAGTAGTCTCGCG
CGCGGCGCGCGAAGCGGCGCACCCGCCGAAGTGTCAGGATTTTTTCCGTG
CACATCGAGGCGACCATGTTCTGGTGCAGGTGCTTGGGCACCTCGTCGTT
GAGCTCGCGCCGAAACTTCTGCTTGGACATGCCCCAGGAGTACTCGGATT
CCCACCCCCGCCACCTCCGGGTGGAACTTCGGAGATAGCAGCAGGATGTG
CCCACGAATCTCCACACACGCATGAGGCACCGGTTCTCTCGATCGTACAG
GAGCATCGACGCCATCCAATCCGCACGCGTCACATTAACCCCCTCTCCTG
TGGGGCGCTCAGTCGATGCAAGCTGTGGTGAGACTTCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig6170:1388..2176+

>mRNA_H-paniculata_contig6170.13892.1 ID=mRNA_H-paniculata_contig6170.13892.1|Name=mRNA_H-paniculata_contig6170.13892.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig6170:1388..2176+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGCCAGGCTCCATGTCAAGGCTGTTGCGGAGAGCCTTGTACGTCTT
CACCTTCTCGATCATAATGAAGCCAGGCTCCATGTCAAGGCTGTTGCGGA
GAGCCTTGTACGTCTTCACCTTCTCGATCATACAGGATTTTTTCCGTGCA
CATCGAGGCGACCATGTTCTGGTGCAGGTGCTTGGGCACCTCGTCGTTGA
GCTCGCGCCGAAACTTCTGCTTGGACATGCCCCAGGAGTACTCGGATTCC
CACCCCCGCCACCTCCGGGTGGAACTTCGGAGATAGCAGCAGGATGTGCC
CACGAATCTCCACACACGCATGAGGCACCGGTTCTCTCGATCGTACAGGA
GCATCGACGCCATCCAATCCGCACGCGTCACATTAACCCCCTCTCCTGTG
GGGCGCTCAGTCGATGCAAGCTGTGGTGACAGGATTTTTTCCGTGCACAT
CGAGGCGACCATGTTCTGGTGCAGGTGCTTGGGCACCTCGTCGTTGAGCT
CGCGCCGAAACTTCTGCTTGGACATGCCCCAGGAGTACTCGGATTCCCAC
CCCCGCCACCTCCGGGTGGAACTTCGGAGATAGCAGCAGGATGTGCCCAC
GAATCTCCACACACGCATGAGGCACCGGTTCTCTCGATCGTACAGGAGCA
TCGACGCCATCCAATCCGCACGCGTCACATTAACCCCCTCTCCTGTGGGG
CGCTCAGTCGATGCAAGCTGTGGTGA
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