mRNA_H-paniculata_contig6164.13883.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6164.13883.1
Unique NamemRNA_H-paniculata_contig6164.13883.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: A0A6H5K9N8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9N8_9PHAE)

HSP 1 Score: 745 bits (1923), Expect = 6.110e-263
Identity = 383/525 (72.95%), Postives = 443/525 (84.38%), Query Frame = 3
Query:  414 MMCATPADRE--REDAILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAVVSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQPMRPLSDTIPTGLSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEAYGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYNAIDGVELQNELQERVVEVLRLGSDELSAVARRDGL-NLSQDEEAMRATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSANDRPALSFQPAEGTITIETAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPYSSFAKDYEPMTRRLNVAPV 1979
            MM  T +D    R+D +L VLSAV+DPDL  DIVSLGF+KE++I    ED    VV+F+VELTTPACPVK  FQ +CRDLVE L WV RA+V MTAQP+R +SDT+PTGLS VA I+AVSSCKGGVGKSTTAVNLA+AL  QGAKVGILDADIYGPSLPTMVKPD + VEFVGNQIRP+ A+GVKLMSYGFVNQGAAIMRGPMVSQLL QFVTLTSWGELDYLVIDMPPGTGD+QLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYY+A+D    +  L+  + ++L L SDELSA A R+GL +  QDE A+RA VIA ++ KRA TK+ ++IFGKGH+ RLADMWGITNT++MPLV  +AS GD G P++V+   S+HS +F +LAEAVVREVAKLK+S NDRP LSFQPAEGT+ IET+   QVM+AADLRRQCRCA+CVEEFSG+PLLDPAS+PE+IVP+ FAPIGNYAVSV+W DGHSSLYPY +FAK Y+P T+   ++PV
Sbjct:   64 MMTETTSDTSPGRKDEVLAVLSAVMDPDLSMDIVSLGFIKELEISG--EDEGRQVVTFDVELTTPACPVKAQFQQDCRDLVEALPWVDRAEVTMTAQPVRDVSDTVPTGLSKVATIIAVSSCKGGVGKSTTAVNLAYALDKQGAKVGILDADIYGPSLPTMVKPDREEVEFVGNQIRPMTAHGVKLMSYGFVNQGAAIMRGPMVSQLLSQFVTLTSWGELDYLVIDMPPGTGDIQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYDAVDQTAFKTGLESNIEDLLTLDSDELSAAAAREGLASPPQDETALRAAVIAEVMKKRASTKQREYIFGKGHQMRLADMWGITNTIRMPLVADVASSGDSGIPFVVSKPDSDHSESFSQLAEAVVREVAKLKFSDNDRPMLSFQPAEGTVMIETSGGKQVMAAADLRRQCRCALCVEEFSGKPLLDPASVPENIVPTEFAPIGNYAVSVKWDDGHSSLYPYKNFAKGYKPRTKSPELSPV 586          
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: A0A835Z7N1_9STRA (HIGH-chlorophyll-fluorescence 101 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N1_9STRA)

HSP 1 Score: 582 bits (1501), Expect = 3.200e-199
Identity = 314/513 (61.21%), Postives = 374/513 (72.90%), Query Frame = 3
Query:  444 REDAILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAVVSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQPMRPLSDTIPTGLSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEAYGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYNAIDGVELQNELQERVVEVLRLGSDELSAVARRDGLNLSQDEEAMRATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSANDRPALSFQPAEGTITIET---AKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPYSSFAKDYEPMTRRLNVA 1973
            R + +L  L  +IDPDLGQDIV+LGF+KE+ I     D  GAV SF VELTTPACPVKE F+T+C+  VE L WV    V MTAQP+   +  +PTGLS V NI+AVSSCKGGVGKSTTAVNLAFAL + GA+VGILDADIYGPSLPTMV+PD DVVEFVGN+I+PLEA GVKLMSYG+VN+GAAIMRGPMV QLLQQFVTLTSWG+LDYL+IDMPPGTGD+QLTLCQ LNITAAVIVTTPQ+LSF DVVKGID+FD VN+PS+AVVENMAYYN +D            V+ L        A AR  G + +   +A +   +       A T+R   +FG+GH  RLADMWG+TN V+MPL   +A+ GD G P++VA+A  EH+  + ELAE+VVREVAK++Y    RP +++  A   ITI+    A     +  A LRR CRCA CVEE +GRPLLDPAS+P  + P  FAPIGNYAVSV WSDGH SLYPY+SF + Y+   RRL  A
Sbjct:   79 RREQVLDALKVIIDPDLGQDIVTLGFIKELAI-----DAAGAV-SFCVELTTPACPVKELFKTQCQTAVEALPWVASTAVTMTAQPVSE-NKQLPTGLSRVQNIIAVSSCKGGVGKSTTAVNLAFALQSSGARVGILDADIYGPSLPTMVRPDKDVVEFVGNEIKPLEARGVKLMSYGYVNEGAAIMRGPMVVQLLQQFVTLTSWGDLDYLLIDMPPGTGDIQLTLCQNLNITAAVIVTTPQRLSFADVVKGIDMFDAVNIPSIAVVENMAYYNEVD------------VDALA------DAAARLVGSSGAMPADAEQLQALVRSAAAAATTQRQ--VFGRGHSKRLADMWGMTNVVRMPLHADVAAAGDAGVPFVVAHADGEHAALYRELAESVVREVAKIRYGRAARPHVAYDEARHLITIDAGAAAAAAATVEPAALRRACRCAACVEELTGRPLLDPASVPAGVRPLGFAPIGNYAVSVDWSDGHKSLYPYASFVEGYQGRRRRLAEA 564          
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: A0A7S4IVR1_9STRA (Hypothetical protein n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IVR1_9STRA)

HSP 1 Score: 497 bits (1280), Expect = 4.260e-165
Identity = 275/527 (52.18%), Postives = 356/527 (67.55%), Query Frame = 3
Query:  429 PADREREDAILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAVVSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQPMRPLSDTIPTGLSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEAYGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYY----NAIDGVELQNELQ-ERVVEVLRLGSDELSAVARRDGLNLSQDEEAMRATVIASIVTKRAE-------------TKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSAND-RPALSFQPAEGTITIETAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPYSSFAKDYEPM 1952
            P   E    IL VLS+V+DPDL +DIV+LGF+K +++ E T       VSF+VELTTPACPVK+ F+ +CR LVE L+W G  DV MTA P     DT   GLS V  ++AVSSCKGGVGKSTTAVNLA++L + GA VGI D D+YGPSLPTMV PD+D V+FVG QI PL+  GVKLMS+G+VN+G+A+MRGPMV+QLL QF++L +WG LDYL++DMPPGTGD+QLTL Q LNITAAVIVTTPQ+LSF DVV+GID+FD+VNVP VAVVENMAYY    N  +G + + EL  ER+   +     +   V    GL + +  E++   V+     + AE             TK    IFG GH+ RL+D +GI +T  +PL++ +A+ GD G P+++++  +  S  + ELA +VVREV K+KY+ +  RP ++F  A+  + +    D + +S A LRR CRCA CVEE +GR LLDPA+I E + P    P GNYA+SV WSDGH SLYPY       E M
Sbjct:   91 PIPNEWRGDILSVLSSVVDPDLNRDIVTLGFIKNLELNEHTR-----AVSFDVELTTPACPVKDQFEIDCRALVEDLAWTGDVDVTMTAAPSN--IDTDSLGLSQVGAVIAVSSCKGGVGKSTTAVNLAYSLQSLGASVGIFDVDVYGPSLPTMVTPDDDNVQFVGRQIAPLQRNGVKLMSFGYVNEGSAVMRGPMVTQLLDQFLSLVNWGSLDYLILDMPPGTGDIQLTLSQRLNITAAVIVTTPQELSFADVVRGIDMFDSVNVPCVAVVENMAYYEVDSNGANGEKAKPELDIERLKRKMEAKLRDTGVVDGDFGLQVDELAESL-VEVVEKEQLRSAEEASSDDADDDASPTKERIQIFGPGHKSRLSDQYGIEHTYSVPLLDRIAANGDSGDPFVLSHPDAPQSSTYRELASSVVREVGKVKYNRDSSRPVVAFDSAKPAVVV----DGRDISPATLRRACRCAYCVEELTGRQLLDPATISESVRPLKMEPCGNYALSVDWSDGHKSLYPYRQIQSLLEDM 605          
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: W7U767_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U767_9STRA)

HSP 1 Score: 493 bits (1268), Expect = 3.390e-163
Identity = 281/562 (50.00%), Postives = 369/562 (65.66%), Query Frame = 3
Query:  384 RNLEDRSGLLMMCATPADREREDAILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAVVSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQPMRPLS----DTIPTGLSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPL----------EAYGVKLMSYGFVNQGAA-IMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAY--YNAIDGVELQNELQER---VVEVLRLGSDELSAVARRDGLNLSQDEEAMRATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSAND-RPALSFQPAEGTITI---------------ETAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPYSSFAKDYEPMTRR 1961
            RNL + S ++    T +  +    ++  L  V+DPDLG D+V+LGF+K + I+  T       VSF +ELTTPACPVK+  + +   +VE L WV +ADV ++A+P+        D   TGLS+V N++AVSSCKGGVGKSTTAVNLAFAL  QGAKVGILDADIYGPSLPTMV PD ++VEFV +QIRP+          +  GVKLMS+G+VN GAA +MRGPMV QL+ Q +TLTSWGELDYLVIDMPPGTGD+ LTLCQ LNITAAVIVTTPQ+LSFTDVVKG+D+FDTVNVP VAVVENMAY   +A+D V+ + ++           RL  D    +   DG+   +   A+   +I  +  +  E +  + +FG+GHR RLADMWG+ NTV +P++E ++  GD GTP +V+   S  ++ F++LA  VVREVAKL+Y  +  RP++++ P E  I +                     Q ++ A LRRQCRCA+CVEE +GR LL P +I EDI P     +GNYA+ + W+DGH SL+PY SF   Y+  + R
Sbjct:   78 RNLAETSSVI----TSSSEKNIAQVVTQLRQVMDPDLGSDVVTLGFIKNLTIDGAT-----GRVSFVLELTTPACPVKDDLKAQAMQVVETLPWVTKADVILSARPITAEKSAGGDMKATGLSLVNNVIAVSSCKGGVGKSTTAVNLAFALDRQGAKVGILDADIYGPSLPTMVAPDTEMVEFVESQIRPMIRQTGLDAEGQPKGVKLMSFGYVNPGAAAVMRGPMVIQLINQLLTLTSWGELDYLVIDMPPGTGDIPLTLCQSLNITAAVIVTTPQRLSFTDVVKGVDMFDTVNVPCVAVVENMAYADVSALDYVDSREDMNRNGGVAGAWQRLRQDIEDVLEDEDGIRTGKG--AVVDDLITVVQRRLREDRIARPLFGQGHRQRLADMWGLDNTVSLPVLEEVSKSGDSGTPLLVSEPDSSSAQIFMDLAGRVVREVAKLRYDRSRLRPSVTYLPVEHVIAVTLHGAAGLTDDGRMESDISPPQKIAPAALRRQCRCAMCVEEMTGRQLLQPETIAEDIKPVEIGAVGNYAIGITWTDGHKSLFPYRSFVDGYDTRSDR 628          
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: A0A448ZMT7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZMT7_9STRA)

HSP 1 Score: 489 bits (1259), Expect = 1.910e-162
Identity = 264/501 (52.69%), Postives = 354/501 (70.66%), Query Frame = 3
Query:  429 PADREREDAILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAVVSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQ-PMRPLSDTIPTGLSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEAYGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYNAIDGVELQN--ELQERVVEVLRLGSDELSAVARRDGLNLSQDEEAMRATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSANDRPALSFQPAEGTITIETAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPY 1922
            P   E +  +L  L ++IDPDLGQDIV+LGFV+ ++++E         VSF+VELTTPACPVKE F+++C  LV  L +VG  DV MTAQ P    +DT  +G++ +  I+AVSSCKGGVGKSTT+VNLA+AL +QGA VGI D D+YGPSLPTMV+PD+D+V FVG QI PL+  GV+LMS+G++N G+AIMRGPMVSQLL QF+++T WG LDYL++DMPPGTGD+QLTL Q LNITAAVIVTTPQ+LSF DVV+G+++FDTV+VP VAVVENMAYY++    ++ N  EL+E V ++L     E   +   DG   +++        +   V K A+T  P  IFG GH+ RL+D WGI +T  MPL++ +A+ GD GTPY++ N +S  ++ + ELA++VV EVAK K+ A+ RP + +      I +    D + + +A LRR CRCA CVEE +G+ +L  + + +DI P   +  GNYA+SV WSDGH SLYPY
Sbjct:   81 PIPNEWQGEVLKTLKSIIDPDLGQDIVTLGFVQNLKLDEAERK-----VSFDVELTTPACPVKETFRSDCERLVSALPFVGSVDVTMTAQEPSNTETDT--SGMAGIGAIIAVSSCKGGVGKSTTSVNLAYALQSQGASVGIFDCDVYGPSLPTMVEPDDDMVRFVGRQIAPLQRNGVRLMSFGYINDGSAIMRGPMVSQLLDQFLSVTQWGSLDYLILDMPPGTGDIQLTLTQRLNITAAVIVTTPQELSFADVVRGVEMFDTVDVPCVAVVENMAYYDSDPASQVNNKDELEEDVRKMLA----EKGLLNNGDGDKFAEE--------LVQTVLKNAKTD-PVQIFGPGHKKRLSDQWGIEHTYSMPLMDRIAANGDSGTPYVLENPESSQTQIYRELAKSVVSEVAKAKF-ASRRPEIEYIEEFNIIQV----DDEPLDSATLRRACRCAACVEELTGKQILKASDVSDDIKPLRMSGTGNYALSVDWSDGHRSLYPY 556          
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: A0A6U3BX58_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A6U3BX58_9STRA)

HSP 1 Score: 479 bits (1234), Expect = 3.170e-159
Identity = 258/496 (52.02%), Postives = 344/496 (69.35%), Query Frame = 3
Query:  441 EREDAILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAVVSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQPMRPLSDTIPTGLSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEAYGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYNAIDGVELQNE-LQERVVEVLRLGSDELSAVARRDGLNLSQDEEAMRATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSA-NDRPALSFQPAEGTITIETAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPY 1922
            E +  +LG L  VIDPDLG DIV+LGFV+ +++E      +   +SF+VELTTPACPVK+ F  +C+ LVE L W G   V MTAQ     S+T   G+  +  ++AVSSCKGGVGKSTT+VNLAFAL + GA VGI DAD+YGPSLPTMV PD+D+V FVG QI PL+  GVKLMS+G+VN G+A+MRGPMV+QLL QF+++T WG LDYL+IDMPPGTGD+QLTL Q LNITAAVIVTTPQ+LSF DVV+G+++FD+VNVPSVAVVENMAYY      ++  E L+  + + L     E +  ++ D   LS+D      +V+   +   +E+++ Q IFG GH+ RL++ +GI +T  +PL++ +A+ GD G PY++ +  S  +  + +LA++VV+EVAK K+S  N RP + F      + +       V++ A LRR CRCA CVEE +GR +L P  + E+I P    P GNYA+SV WSDGH SLYPY
Sbjct:   57 EWQGEVLGQLKTVIDPDLGSDIVTLGFVQNLKLEP-----ESRTISFDVELTTPACPVKDQFAADCQKLVEDLPWTGDVQVTMTAQESS--SETETFGMKQIGAVIAVSSCKGGVGKSTTSVNLAFALQSIGASVGIFDADVYGPSLPTMVTPDDDIVRFVGRQIAPLQRNGVKLMSFGYVNDGSAVMRGPMVTQLLDQFLSVTQWGSLDYLIIDMPPGTGDIQLTLTQKLNITAAVIVTTPQELSFADVVRGVEMFDSVNVPSVAVVENMAYYEVDKQPKVDREGLKAAMAQQLTKAGVETNGGSKVD--ELSEDL----VSVVLESLQANSESEKVQ-IFGSGHKQRLSEQYGIEHTFSVPLLDRIAANGDSGQPYILEHPDSPQAAIYKDLAKSVVKEVAKAKFSGQNSRPDVVFDKEAHKMVVN---GKSVLTPAGLRRGCRCAACVEELTGRQILIPTMVSENIAPLRMTPTGNYALSVDWSDGHRSLYPY 535          
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: R7Q4I6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4I6_CHOCR)

HSP 1 Score: 476 bits (1225), Expect = 3.350e-158
Identity = 266/527 (50.47%), Postives = 344/527 (65.28%), Query Frame = 3
Query:  408 LLMMCATPADREREDAILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAV-VSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQPMRPLSDTIPTG-LSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEAYGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYNAIDGVELQNELQERVVEVLRLGSDELSAVARRDGLNLSQDEEAMRATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSANDRPALSFQPAEGTITIE--TAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPYSSFAKDY---EPMTRRLN 1967
            ++  C+T  D +R+ A+   LS VIDPDLGQDIV+LGF+K+++  E    +KG   VSF VELTTPACPVK+ F+++C+ L E +S+VG+A+V MTA P      T PTG L  +  IVAV+SCKGGVGKSTTAVNLAF+L ++GA+VGI+DADIYGPSLPT+V+P+   V+F   +IRPLEA+GVKLMS+G+VN  +AIMRGPM++ +L Q +T T WG LDYLVID+PPGTGDVQLTL Q++N+TAAVIVTTPQKLSF DVVKGID+FD V+VPSVAVVENM+Y+ A D                                                       T     IFGKGH+ RL + +GIT++  MP+   L+   D G PY+VAN KS  S  +  LA AVV+EVAK++Y     P + +  A G I +     + TQ +  A LRRQCRCA+CV+E +G   LDPA + +D+ P   AP+GNYA+ V WSDGH SLYPYS F +++   + MT   N
Sbjct:   48 VIQACSTSTDVDRKQALFKALSTVIDPDLGQDIVTLGFIKDVEFSE-VPGLKGMYDVSFKVELTTPACPVKDIFKSDCKRLAEDISFVGKANVIMTAAPPSANVPT-PTGALDNIGAIVAVASCKGGVGKSTTAVNLAFSLASRGARVGIMDADIYGPSLPTLVEPEERAVQFKDGRIRPLEAHGVKLMSFGYVNPDSAIMRGPMIANVLNQLLTTTEWGVLDYLVIDLPPGTGDVQLTLSQIINMTAAVIVTTPQKLSFVDVVKGIDMFDKVSVPSVAVVENMSYFVAPD-------------------------------------------------------TGVKHHIFGKGHQQRLIEQYGITDSFSMPIDPELSEKSDSGIPYVVANPKSMLSDEYQRLASAVVQEVAKIQYGGLGIPDVQWDEASGNINVRMPNTETTQKIWPATLRRQCRCALCVDEMTGAQKLDPADVSDDVRPMKLAPVGNYALDVLWSDGHPSLYPYSRFVENWRNSKDMTEETN 517          
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: A0A7S2M212_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M212_9STRA)

HSP 1 Score: 473 bits (1217), Expect = 5.530e-157
Identity = 257/501 (51.30%), Postives = 343/501 (68.46%), Query Frame = 3
Query:  429 PADREREDAILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAVVSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQPMRPLSDTIPTGLSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEAYGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYNAIDG--VELQNE-LQERVVEVLRLGSDELSAVARRDGLNLSQDEEAMRATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSANDRPALSFQPAEGTITIETAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPY 1922
            P+D + +  IL  LS +IDPDL  DIVSLGFV+ +QI++        +VS ++ LTTPACP+K+ F  +C+D++  L +   A V +TAQ         P G+S +  ++AVSSCKGGVGKSTTAVNLAFAL   GAKVGI DAD+YGPSLPTMV  ++D V FVG QI PL+  GV LMS+G+VN+G+A+MRGPMV+QLL QF++LT+WG LDYL++DMPPGTGD+QLTL Q LNITAAVIVTTPQ+LSF DV +G+++FDTVNVP +AVVENMAY+       VE+  E L+++ ++VL+   D +S  A  D +N   D      TV  ++            IFG+GH+ RL++ WGI +T  +PLV  +A  GD GTP+++ N  S  +  + ELA+ V RE +K+ +S   RP LS+      I ++   D   ++ A+LRR+CRCA CVEE +G+ +L+P SIPE I P + +P GNYAVSV WSDGH SLYPY
Sbjct:   20 PSDWQSQ--ILSGLSVIIDPDLDADIVSLGFVQNLQIDDS------GIVSIDLCLTTPACPIKDLFVQQCQDIINGLEFTRGAQVTLTAQ-QNEAPTAAPLGMSQIGAVIAVSSCKGGVGKSTTAVNLAFALQGMGAKVGIFDADVYGPSLPTMVAVEDDKVRFVGRQIAPLKRGGVSLMSFGYVNEGSAVMRGPMVTQLLDQFLSLTNWGPLDYLILDMPPGTGDIQLTLSQRLNITAAVIVTTPQELSFVDVERGVEMFDTVNVPCIAVVENMAYFEKEKSANVEVDYETLRDKFLQVLK-ERDGISDEAAADVVNSLID------TVQENVQNAGKGEMEEIRIFGQGHKRRLSEQWGIEHTFSVPLVSTIAKNGDSGTPFILDNPSSPQADTYKELAKTVARETSKILFSKTSRPNLSYLSEAHVIQVD-GMDQGTLAPAELRRECRCAACVEELTGKQILNPESIPESIRPMSMSPTGNYAVSVDWSDGHKSLYPY 503          
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: A0A2V3IH99_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IH99_9FLOR)

HSP 1 Score: 469 bits (1207), Expect = 1.230e-155
Identity = 256/512 (50.00%), Postives = 328/512 (64.06%), Query Frame = 3
Query:  420 CATPADREREDAILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAV-VSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQPMRPLSDTIPTGLSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEAYGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYNAIDGVELQNELQERVVEVLRLGSDELSAVARRDGLNLSQDEEAMRATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSANDRPALSFQPAEGTITIE--TAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPYSSFAKDYE 1946
            C    D +R+ A+L VLS VIDPDL Q+IVSLGF+K I++    E + G   VSF+VELTTPACP+K+AFQ++C+ L E L WVGRA V MTA   +  +      L  V  IVAV+SCKGGVGKSTTAVNLAFAL   GA+VGI+DADIYGPSLPT+V+PD   V+F   +I+PL   GVKLMS+G+VN  +AIMRGPM++ +L Q +T T WG LDYL+IDMPPGTGD+QLTL Q++N+TAA+IVTTPQKLSF DVVKGID+FD V VPSV VVENMAY+ A D                                                       T++  ++FGKGH+ RL + +G+ N   MP+   L+   D G PY++A+  S  +  +  +A +VVREVAK+K+     P +SF    G I I+   ++  Q +  A LRRQCRCA+CV+E +GR  L+P  IPE I P    P+GNYA+S+ WSDGH SLYPYS F +D+E
Sbjct:   45 CLPNTDTDRKQALLDVLSQVIDPDLHQNIVSLGFIKNIELHP-VESIPGLFDVSFSVELTTPACPIKDAFQSDCKRLAESLDWVGRARVIMTAAEPKQQTSQDTGVLDYVNAIVAVASCKGGVGKSTTAVNLAFALSQLGARVGIMDADIYGPSLPTLVEPDERAVQFADGRIQPLTCNGVKLMSFGYVNPESAIMRGPMIANVLNQLLTTTQWGALDYLIIDMPPGTGDIQLTLSQIVNMTAALIVTTPQKLSFVDVVKGIDMFDKVGVPSVGVVENMAYFVAPD-------------------------------------------------------TQKEHYVFGKGHKQRLVEQYGLVNAFSMPIDAELSERSDNGVPYVLAHPSSLIAEEYKNMASSVVREVAKIKHGGRRTPEVSFDEDSGFIVIKKPNSEHEQQVWPATLRRQCRCALCVDEMTGRVRLNPDDIPETITPKKMNPVGNYALSINWSDGHPSLYPYSRFVEDWE 500          
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Match: B5Y591_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y591_PHATC)

HSP 1 Score: 461 bits (1185), Expect = 1.470e-153
Identity = 244/496 (49.19%), Postives = 319/496 (64.31%), Query Frame = 3
Query:  456 ILGVLSAVIDPDLGQDIVSLGFVKEIQIEEGTEDMKGAVVSFNVELTTPACPVKEAFQTECRDLVERLSWVGRADVNMTAQPMRPLSDTIPTGLSMVANIVAVSSCKGGVGKSTTAVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEAYGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGTGDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVENMAYYNAIDGVELQNELQERVVEVLRLGSDELSAVARRDGLNLSQDEEAMRATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASCGDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSANDRPALSF-------QPAEGTITIETAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPSTFAPIGNYAVSVQWSDGHSSLYPY 1922
            +L  L +VIDPDLG DIV+LGFV+ ++++       G  VSF+VELTTPACPVKE FQ +C+ LV+ L W     V MTAQP   + +T   G+S V  ++AVSSCKGGVGKSTTAVNLAF+L   GA VGI DAD+YGPSLPTM+ P +D V FVG Q+ PL+  GV+LMS+G+VN G+A+MRGPMV+QLL QF+++T WG LDYL++DMPPGTGD+QLTL Q LNITAAVIVTTPQ+LSF DVV+G+++FDTVNVP +AVVENMAYY + D  ++Q                                                        IFG GHR RL+  WGI ++  +PL+  +A+ GD GTP+++    S  ++ + ELA AVV EVAK K++ + RP++ +       Q ++  +     +    +  A+LRR CRCA CVEE +GR +L P+S+ + I P    P GNYA+SV WSDGH SLYPY
Sbjct:    2 VLSTLKSVIDPDLGSDIVTLGFVQNLKLD-------GRDVSFDVELTTPACPVKEQFQLDCQQLVQDLPWTNNIQVTMTAQPS--VQETATLGMSQVGAVIAVSSCKGGVGKSTTAVNLAFSLQRLGATVGIFDADVYGPSLPTMITPQDDTVRFVGRQVAPLQRNGVRLMSFGYVNDGSAVMRGPMVTQLLDQFLSVTHWGALDYLILDMPPGTGDIQLTLTQKLNITAAVIVTTPQELSFADVVRGVEMFDTVNVPCIAVVENMAYYESADPEKIQ--------------------------------------------------------IFGAGHRDRLSQQWGIEHSFSIPLLNKIAANGDNGTPFVLEFPDSPPAKIYQELASAVVSEVAKTKFAKSMRPSVQYDAESHLLQVSQNGVGSTDEEHVATLPPAELRRACRCAACVEELTGRQILVPSSVSDKIAPRNMVPTGNYALSVDWSDGHRSLYPY 432          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6164.13883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9N8_9PHAE6.110e-26372.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z7N1_9STRA3.200e-19961.21HIGH-chlorophyll-fluorescence 101 n=1 Tax=Tribonem... [more]
A0A7S4IVR1_9STRA4.260e-16552.18Hypothetical protein n=4 Tax=Odontella aurita TaxI... [more]
W7U767_9STRA3.390e-16350.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A448ZMT7_9STRA1.910e-16252.69Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6U3BX58_9STRA3.170e-15952.02Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
R7Q4I6_CHOCR3.350e-15850.47Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2M212_9STRA5.530e-15751.30Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A2V3IH99_9FLOR1.230e-15550.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
B5Y591_PHATC1.470e-15349.19Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6164contigH-paniculata_contig6164:6661..11303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score752.3
Seed ortholog evalue1.7e-214
Seed eggNOG ortholog2880.D7FMK8
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Component of the cytosolic iron-sulfur (Fe S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NBP35-CFD1 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins
EggNOG OGsCOG0489@1,KOG3022@2759
Ec32 ortholog descriptionHCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding
Ec32 orthologEc-23_000680.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2081
Cds size1782
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6164.13883.1prot_H-paniculata_contig6164.13883.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6164 6861..11204 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930695.7867858-UTR-H-paniculata_contig6164:6660..68601622930695.7867858-UTR-H-paniculata_contig6164:6660..6860Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6164 6661..6860 +
1691481410.2736123-UTR-H-paniculata_contig6164:6660..68601691481410.2736123-UTR-H-paniculata_contig6164:6660..6860Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6164 6661..6860 +
1622930695.839649-UTR-H-paniculata_contig6164:11204..113031622930695.839649-UTR-H-paniculata_contig6164:11204..11303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6164 11205..11303 +
1691481410.309153-UTR-H-paniculata_contig6164:11204..113031691481410.309153-UTR-H-paniculata_contig6164:11204..11303Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6164 11205..11303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930695.805032-CDS-H-paniculata_contig6164:6860..77871622930695.805032-CDS-H-paniculata_contig6164:6860..7787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6164 6861..7787 +
1691481410.2866728-CDS-H-paniculata_contig6164:6860..77871691481410.2866728-CDS-H-paniculata_contig6164:6860..7787Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6164 6861..7787 +
1622930695.820844-CDS-H-paniculata_contig6164:10349..112041622930695.820844-CDS-H-paniculata_contig6164:10349..11204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6164 10350..11204 +
1691481410.2967904-CDS-H-paniculata_contig6164:10349..112041691481410.2967904-CDS-H-paniculata_contig6164:10349..11204Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6164 10350..11204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6164.13883.1

>prot_H-paniculata_contig6164.13883.1 ID=prot_H-paniculata_contig6164.13883.1|Name=mRNA_H-paniculata_contig6164.13883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=594bp
MQRQHMIAALVIMATVMVHVACGFVPLSPSVLRSTTRTTQSLSSPGWLKN
SMRSQLELEGRRNLEDRSGLLMMCATPADREREDAILGVLSAVIDPDLGQ
DIVSLGFVKEIQIEEGTEDMKGAVVSFNVELTTPACPVKEAFQTECRDLV
ERLSWVGRADVNMTAQPMRPLSDTIPTGLSMVANIVAVSSCKGGVGKSTT
AVNLAFALHAQGAKVGILDADIYGPSLPTMVKPDNDVVEFVGNQIRPLEA
YGVKLMSYGFVNQGAAIMRGPMVSQLLQQFVTLTSWGELDYLVIDMPPGT
GDVQLTLCQVLNITAAVIVTTPQKLSFTDVVKGIDLFDTVNVPSVAVVEN
MAYYNAIDGVELQNELQERVVEVLRLGSDELSAVARRDGLNLSQDEEAMR
ATVIASIVTKRAETKRPQFIFGKGHRGRLADMWGITNTVQMPLVEGLASC
GDIGTPYMVANAKSEHSRAFLELAEAVVREVAKLKYSANDRPALSFQPAE
GTITIETAKDTQVMSAADLRRQCRCAVCVEEFSGRPLLDPASIPEDIVPS
TFAPIGNYAVSVQWSDGHSSLYPYSSFAKDYEPMTRRLNVAPV*
back to top

mRNA from alignment at H-paniculata_contig6164:6661..11303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6164.13883.1 ID=mRNA_H-paniculata_contig6164.13883.1|Name=mRNA_H-paniculata_contig6164.13883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4643bp|location=Sequence derived from alignment at H-paniculata_contig6164:6661..11303+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGACAGGTTGTTGTGGGTGACCCCTCCAACTGTATTGTGCTGTCTTGTTC CCAAAACGATAGTGTTGCGCTGTATAGCCCCCGACTGCCGTTACTCCTGG GGAAAATCTGGTAGCTACGCTTTGCAGCATCGCTAAAGTATTACTTGCGA GACAAAGTAGCTGCAGCTGTGCATGCACGGATCTAGACAGAATTTGGATA ATGCAACGGCAACACATGATCGCGGCCTTGGTCATCATGGCAACCGTCAT GGTTCATGTTGCGTGCGGGTTTGTACCACTCTCACCCTCTGTTCTGCGAA GCACGACCAGAACGACTCAATCGCTCTCTTCACCCGGATGGTTAAAAAAT TCCATGCGTTCGCAATTAGAGCTAGAGGGGCGGCGAAATCTTGAAGACCG GAGTGGTCTGCTCATGATGTGTGCAACTCCTGCTGACCGTGAGCGGGAGG ACGCGATTCTCGGTGTTCTGTCGGCGGTAATCGATCCTGACCTTGGGCAA GATATCGTCTCGCTTGGTTTCGTCAAGGAAATTCAAATAGAGGAAGGAAC CGAGGACATGAAAGGCGCAGTGGTTTCCTTTAACGTGGAGCTGACCACAC CTGCATGTCCCGTTAAGGAGGCTTTCCAAACTGAGTGCCGCGACCTGGTG GAAAGGTTGTCGTGGGTTGGACGGGCTGATGTCAACATGACCGCTCAGCC TATGCGACCGCTGTCGGACACCATACCAACAGGCTTGTCTATGGTTGCCA ACATTGTCGCAGTGTCCAGCTGCAAGGGTGGGGTAGGAAAATCGACGACC GCTGTAAATCTGGCGTTTGCGTTACATGCGCAAGGTGCCAAGGTTGGAAT TTTGGACGCCGACATATATGGCCCGAGTCTTCCCACTATGGTCAAGCCGG ATAATGACGTCGTGGAGTTCGTCGGCAACCAAATTCGACCGCTGGAAGCA TATGGCGTAAAGCTCATGAGTTACGGTTTCGTTAATCAGGGTGCTGCCAT CATGCGCGGGCCGATGGTGTCTCAGCTGCTTCAACAATTTGTTACGCTCA CAAGTTGGGGAGAATTGGATTACCTGGTGATCGACATGCCACCCGGTACT GGGGATGTTCAACTAACACTATGTCAGGTGAGATTTCGCGTTTGCGTATC TCGACTGTAATACGCATTGGCTTCGATGGGGTATGCACTTGGCAGAAAAG TGACGTCCATTTCGTTAGTAAGTGTTCAGCAGCCGTTTTGAGGGTATTTG TACACCGATGATTCTAGTCTAAGACCCAAGTTTGACCGGAAGATAACACG TAGATCACGTAGGAAGGGTGCAATTTACTATTACTTGCGGGTTCGAAGAA AATAACTTGAAGATGATCCTCTTTTGTAATATTTTTCAATTTTCTTGTGG ACGGAGGGACAACAGCATTATTTTTTCCGACGGCCACAACGCTACTACAA CATTCCGATGTCGAAATTGCGTTCATTTTGCCCAATCGCCCGCTTGCCTG ACTGCCACTGGGTGAGTGTAACGAATTTCCATAATGTGTGGGCTGTTTTT TTTTTTTTTTACCAGCTGTTCGTCCGTTAAGTTAAGGTTAGACTCTTATG ACAACTTCCGAGAGTGTTGCTCACAAACCAAGGTACACATCGCTATTTCA TGTACGGACCTCGGTTTGCCGCCCCTAACTTCTCCTTGCGTTTCGAAACC GTCGAGAAATCCAAGCACATCCTTTCTGACCACGGGTGGCTTGCGGAAAG CGTCAAGCCTTGGGTCACATTTCCACGTACCCATCGCTAGCTGTAAGTAC ACATGTTCGTTTAGCGCCCATGACTTCGTGTCACGCCTTGAAATTGTCGA GACTTGCAAGCTCAATATTTCTCGATTAGGGTTAGTGTTATTATGTAGAC CCTTTGACCCCTACGTTTTTTCCGAGCCTGTTGCATTTTGCATGGTCAAC TATAGTGACGACTGTATAACCAGTGCTTTTTTGGACAAAAACGGTGGTAG AAAGTTGTCATCCACAACAAAGGTGCCAACACCCCTCAGAAAAGCCCGTC CCGTTCATTTTCGCGGGTACACTTCTCGGCACTCACCCGTATAAAAAATA TATATTCCGCCCGAAAAAAGTATTTTATTCATTGTTTTTGTTTTCACAAG TGCAAGCCCAAGCCTAATCATAAGGATGGCTCTTCAACCGTTTCCGCCCA TCACCGACTGGTCAAAGCCCACGCGACGAAAGAGCCCGACCATGCTTTTG TCGACTGGCTTCCAGTGCATAAAACTACCCCCAGCTGACCGGAAGGAGAG AAAACGTGCACATTTCTTGCTGCGGACAGGTGCCAACGGAGGTATTTCAG TTGGCATGTAATCTGGCTGCGGAATCACCTATTGGCAATACATTTGCTTT GGGTTTGTAGGCGTGCATGTTAGACTATACTATCCAAGATTTGTGCATAT GTACAAACTGGTTGCGGGTCGCTTTTTTCGTGTCTGGCTTTGTTCTGATT TGTCACACACAGTCCTCATGAGGTGCTCATGTCGCGTTCGTCAAACGGTG TTAAGGTACAAAATACTGCCACTCTCGGGAGTATCGACATATGTAGAGGT AAATCCGAGAGAGATTGGTGAATCGCGAAACGTTGCGACCTTCTTGTGTG TGTACTGTCCATGACGTACACGTACTCTTGTACTGTGACGCACATCCGTC ATACAGTCGATAAAATTATGTTTCTTCAGCGATGACAGTCAGCCTGCCGC AGATATGGGTGGGTTTCAACCCCTTGACAATTTATGCTTGGAGAAACCCA GGGATGAAGCGGACTTGACTTGTTATATTTACCATCTCCCATGAACAGGA GGAATACTGTGAGGGTACTAGTGGCTTATTAAATAACACGTTTGTGTTCG TTCCACTCTTCCTAAAACCGATGCTTTCAACTGCAGAAGCCAACGACACA TGCAACCGAAAACATGAATACGCCTGGCTCAATGTGTATGTGGTCAAAGT TTTTCTTTATTTGGAGAACATACAGCATAACTCTACAGGAGGCATATAGC GCGCATCAGAGACACGTGCTTATACACCCATTTACCCACGTCAGCGGCAA CGCGGTGCATCGCATGTAGGTGGTATGCAGATACTCCAAGAAATGCTCGA GTACAAGGCCATCCGGATTATCACCGTCATAATACAGTATTTCACGTGAA GGCTGTAATGCACGGATGGTATACATCTGTTGAGAGCTAATTGGCTCCCG TTTTTGGCCCTGGCTGACTCCACAGTGTTCGTGAACCGATCGCGCTCTAT GGTTTTAATTGTAGCTTTTTCCATCGTGAGCTGTTCAGAATACCCTATAT GTCGTGAAGCATCAAATTTTGTCTGAAAAAACAGCGTGTGGGCAATTTAG ACTTGTCAATTCTCTTCTAATCTGAACCTCCTCCTGAACACGTGTTTGCG AAGTTGTCTGCAAGTCAATGTTCAACTAATTATTGATCATGTGTATTTGT TCACGGACGTCAATCATGCAACGTTTGTCGCCGGTCGCAAACTGTTCAGC AGCTGTGGTAAGTGGCGTTAGATGTCCTATATGTCATCCGGGCTCCACCG TCTGTAACTTGATATATTGCGCTTATCACTTGCTCACCTTTTTTTCAAAC ATGTTGCGTGCACCATTTCCCCACCTCGCCAAATATCAGGTCCTTAACAT CACGGCAGCAGTCATCGTCACCACTCCACAGAAACTTAGCTTCACGGATG TTGTGAAAGGCATTGATCTGTTTGACACAGTCAATGTGCCGAGTGTGGCT GTTGTGGAGAATATGGCCTACTACAACGCAATCGATGGGGTGGAGCTGCA GAATGAATTGCAAGAAAGGGTTGTTGAGGTACTTCGACTAGGAAGTGATG AACTGTCTGCGGTGGCTCGCCGAGATGGTCTCAACTTGTCTCAGGACGAG GAAGCCATGAGAGCGACTGTAATTGCCAGCATCGTCACCAAACGTGCAGA GACGAAGAGGCCGCAATTCATTTTTGGAAAGGGCCATCGGGGACGTTTGG CAGATATGTGGGGCATTACGAATACTGTCCAGATGCCGCTGGTCGAAGGT CTCGCGTCTTGCGGAGACATAGGGACCCCGTACATGGTTGCAAATGCTAA AAGCGAGCATTCGAGGGCGTTCTTGGAATTGGCAGAAGCAGTAGTGAGGG AGGTGGCGAAGCTTAAATACAGCGCAAACGACCGCCCAGCGCTTTCATTC CAACCAGCGGAGGGAACGATAACCATAGAAACGGCGAAGGACACCCAGGT TATGTCTGCTGCAGATCTTCGGCGGCAATGTAGATGCGCAGTCTGCGTCG AGGAGTTCTCAGGACGACCTCTGCTAGACCCTGCAAGCATACCTGAAGAC ATCGTCCCGTCTACCTTTGCGCCGATAGGAAACTATGCGGTGTCAGTGCA GTGGAGCGACGGTCATAGTTCACTGTATCCCTACTCCTCCTTCGCCAAAG ACTACGAACCTATGACGAGGAGGCTAAATGTAGCACCTGTATAATATATA TTAGAATATCGTTCGTTAACCCTTTGACTCTTCGAACAAGAAACAATGAC AAAATGGATCACTTTTTTCCAGGAAACCCAACGCCAAATTGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6164:6661..11303+

>mRNA_H-paniculata_contig6164.13883.1 ID=mRNA_H-paniculata_contig6164.13883.1|Name=mRNA_H-paniculata_contig6164.13883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3564bp|location=Sequence derived from alignment at H-paniculata_contig6164:6661..11303+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACGGCAACACATGATCGCGGCCTTGGTCATCATGGCAACCGTCAT
GGTTCATGTTGCGTGCGGGTTTGTACCACTCTCACCCTCTGTTCTGCGAA
GCACGACCAGAACGACTCAATCGCTCTCTTCACCCGGATGGTTAAAAAAT
TCCATGCGTTCGCAATTAGAGCTAGAGGGGCGGCGAAATCTTGAAGACCG
GAGTGGTCTGCTCATGATGTGTGCAACTCCTGCTGACCGTGAGCGGGAGG
ACGCGATTCTCGGTGTTCTGTCGGCGGTAATCGATCCTGACCTTGGGCAA
GATATCGTCTCGCTTGGTTTCGTCAAGGAAATTCAAATAGAGGAAGGAAC
CGAGGACATGAAAGGCGCAGTGGTTTCCTTTAACGTGGAGCTGACCACAC
CTGCATGTCCCGTTAAGGAGGCTTTCCAAACTGAGTGCCGCGACCTGGTG
GAAAGGTTGTCGTGGGTTGGACGGGCTGATGTCAACATGACCGCTCAGCC
TATGCGACCGCTGTCGGACACCATACCAACAGGCTTGTCTATGGTTGCCA
ACATTGTCGCAGTGTCCAGCTGCAAGGGTGGGGTAGGAAAATCGACGACC
GCTGTAAATCTGGCGTTTGCGTTACATGCGCAAGGTGCCAAGGTTGGAAT
TTTGGACGCCGACATATATGGCCCGAGTCTTCCCACTATGGTCAAGCCGG
ATAATGACGTCGTGGAGTTCGTCGGCAACCAAATTCGACCGCTGGAAGCA
TATGGCGTAAAGCTCATGAGTTACGGTTTCGTTAATCAGGGTGCTGCCAT
CATGCGCGGGCCGATGGTGTCTCAGCTGCTTCAACAATTTGTTACGCTCA
CAAGTTGGGGAGAATTGGATTACCTGGTGATCGACATGCCACCCGGTACT
GGGGATGTTCAACTAACACTATGTCAGATGCAACGGCAACACATGATCGC
GGCCTTGGTCATCATGGCAACCGTCATGGTTCATGTTGCGTGCGGGTTTG
TACCACTCTCACCCTCTGTTCTGCGAAGCACGACCAGAACGACTCAATCG
CTCTCTTCACCCGGATGGTTAAAAAATTCCATGCGTTCGCAATTAGAGCT
AGAGGGGCGGCGAAATCTTGAAGACCGGAGTGGTCTGCTCATGATGTGTG
CAACTCCTGCTGACCGTGAGCGGGAGGACGCGATTCTCGGTGTTCTGTCG
GCGGTAATCGATCCTGACCTTGGGCAAGATATCGTCTCGCTTGGTTTCGT
CAAGGAAATTCAAATAGAGGAAGGAACCGAGGACATGAAAGGCGCAGTGG
TTTCCTTTAACGTGGAGCTGACCACACCTGCATGTCCCGTTAAGGAGGCT
TTCCAAACTGAGTGCCGCGACCTGGTGGAAAGGTTGTCGTGGGTTGGACG
GGCTGATGTCAACATGACCGCTCAGCCTATGCGACCGCTGTCGGACACCA
TACCAACAGGCTTGTCTATGGTTGCCAACATTGTCGCAGTGTCCAGCTGC
AAGGGTGGGGTAGGAAAATCGACGACCGCTGTAAATCTGGCGTTTGCGTT
ACATGCGCAAGGTGCCAAGGTTGGAATTTTGGACGCCGACATATATGGCC
CGAGTCTTCCCACTATGGTCAAGCCGGATAATGACGTCGTGGAGTTCGTC
GGCAACCAAATTCGACCGCTGGAAGCATATGGCGTAAAGCTCATGAGTTA
CGGTTTCGTTAATCAGGGTGCTGCCATCATGCGCGGGCCGATGGTGTCTC
AGCTGCTTCAACAATTTGTTACGCTCACAAGTTGGGGAGAATTGGATTAC
CTGGTGATCGACATGCCACCCGGTACTGGGGATGTTCAACTAACACTATG
TCAGGTCCTTAACATCACGGCAGCAGTCATCGTCACCACTCCACAGAAAC
TTAGCTTCACGGATGTTGTGAAAGGCATTGATCTGTTTGACACAGTCAAT
GTGCCGAGTGTGGCTGTTGTGGAGAATATGGCCTACTACAACGCAATCGA
TGGGGTGGAGCTGCAGAATGAATTGCAAGAAAGGGTTGTTGAGGTACTTC
GACTAGGAAGTGATGAACTGTCTGCGGTGGCTCGCCGAGATGGTCTCAAC
TTGTCTCAGGACGAGGAAGCCATGAGAGCGACTGTAATTGCCAGCATCGT
CACCAAACGTGCAGAGACGAAGAGGCCGCAATTCATTTTTGGAAAGGGCC
ATCGGGGACGTTTGGCAGATATGTGGGGCATTACGAATACTGTCCAGATG
CCGCTGGTCGAAGGTCTCGCGTCTTGCGGAGACATAGGGACCCCGTACAT
GGTTGCAAATGCTAAAAGCGAGCATTCGAGGGCGTTCTTGGAATTGGCAG
AAGCAGTAGTGAGGGAGGTGGCGAAGCTTAAATACAGCGCAAACGACCGC
CCAGCGCTTTCATTCCAACCAGCGGAGGGAACGATAACCATAGAAACGGC
GAAGGACACCCAGGTTATGTCTGCTGCAGATCTTCGGCGGCAATGTAGAT
GCGCAGTCTGCGTCGAGGAGTTCTCAGGACGACCTCTGCTAGACCCTGCA
AGCATACCTGAAGACATCGTCCCGTCTACCTTTGCGCCGATAGGAAACTA
TGCGGTGTCAGTGCAGTGGAGCGACGGTCATAGTTCACTGTATCCCTACT
CCTCCTTCGCCAAAGACTACGAACCTATGACGAGGAGGCTAAATGTAGCA
CCTGTATAAGTCCTTAACATCACGGCAGCAGTCATCGTCACCACTCCACA
GAAACTTAGCTTCACGGATGTTGTGAAAGGCATTGATCTGTTTGACACAG
TCAATGTGCCGAGTGTGGCTGTTGTGGAGAATATGGCCTACTACAACGCA
ATCGATGGGGTGGAGCTGCAGAATGAATTGCAAGAAAGGGTTGTTGAGGT
ACTTCGACTAGGAAGTGATGAACTGTCTGCGGTGGCTCGCCGAGATGGTC
TCAACTTGTCTCAGGACGAGGAAGCCATGAGAGCGACTGTAATTGCCAGC
ATCGTCACCAAACGTGCAGAGACGAAGAGGCCGCAATTCATTTTTGGAAA
GGGCCATCGGGGACGTTTGGCAGATATGTGGGGCATTACGAATACTGTCC
AGATGCCGCTGGTCGAAGGTCTCGCGTCTTGCGGAGACATAGGGACCCCG
TACATGGTTGCAAATGCTAAAAGCGAGCATTCGAGGGCGTTCTTGGAATT
GGCAGAAGCAGTAGTGAGGGAGGTGGCGAAGCTTAAATACAGCGCAAACG
ACCGCCCAGCGCTTTCATTCCAACCAGCGGAGGGAACGATAACCATAGAA
ACGGCGAAGGACACCCAGGTTATGTCTGCTGCAGATCTTCGGCGGCAATG
TAGATGCGCAGTCTGCGTCGAGGAGTTCTCAGGACGACCTCTGCTAGACC
CTGCAAGCATACCTGAAGACATCGTCCCGTCTACCTTTGCGCCGATAGGA
AACTATGCGGTGTCAGTGCAGTGGAGCGACGGTCATAGTTCACTGTATCC
CTACTCCTCCTTCGCCAAAGACTACGAACCTATGACGAGGAGGCTAAATG
TAGCACCTGTATAA
back to top