mRNA_H-paniculata_contig12190.1388.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12190.1388.1
Unique NamemRNA_H-paniculata_contig12190.1388.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: D7FK47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK47_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 9.770e-23
Identity = 54/126 (42.86%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   10 QDTSHRFCGIQETFRYNIAKVPNRQRVQVIKGDSMLSLSALIASGHSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDDEVMFPDDVAVATATLERAFAGEMKIVHR 387
            ++T      ++E F +N+ K PN +RV   KGDS+ SL+ L+ASG +S+FDVVYVDASH+ +D              L D +L+FRLLKVGG +IFDD  M    VA AT+  E A    ++++H+
Sbjct:  104 ENTGFDMVSVEERFHWNMGKAPNGERVVAFKGDSLESLAGLVASGLTSSFDVVYVDASHEMKD-------------TLGDALLSFRLLKVGGVMIFDDFWM--KGVARATSAFEEALWDSLQVLHK 214          
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: D7FK29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK29_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 7.650e-19
Identity = 50/126 (39.68%), Postives = 75/126 (59.52%), Query Frame = 1
Query:   10 QDTSHRFCGIQETFRYNIAKVPNRQRVQVIKGDSMLSLSALIASGHSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDDEVMFPDDVAVATATLERAFAGEMKIVHR 387
            +++ +    I++ FR N+A+VPN  RV   KG S+ SL+ ++ASG  S FD V++D SH+ ++             VL D +L+FR+LKVGG +IFDD  M    VA ATA  E A    ++++HR
Sbjct:  128 ENSGYEMAAIEDRFRSNMARVPNGDRVVAFKGTSLESLANILASGLDSRFDAVFLDGSHEMKN-------------VLRDALLSFRMLKVGGVMIFDDYWM--RGVAHATAAFEEALGDYLEVLHR 238          
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: A0A6H5JQS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQS8_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.520e-18
Identity = 49/125 (39.20%), Postives = 72/125 (57.60%), Query Frame = 1
Query:   10 QDTSHRFCGIQETFRYNIAKVPNRQRVQVIKGDSMLSLSALIASGHSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDDEVMFPDDVAVATATLERAFAGEMKIVH 384
            +++ +    I++ FR N+A++PN  RV   KG S+ SL+ ++ASG  S FD V +D SH+  D             VL D +L+FR+LKVGG +IFDD  M    VA ATA  E A    ++++H
Sbjct:   51 ENSGYDMAAIEDRFRSNMARIPNGDRVVAFKGSSLESLANILASGLDSRFDAVLLDGSHEMND-------------VLGDALLSFRMLKVGGVMIFDDYWM--RGVAQATAAFEEALGDYLEVLH 160          
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: A0A1G5IZ77_9HYPH (Methyltransferase domain-containing protein n=1 Tax=Microvirga guangxiensis TaxID=549386 RepID=A0A1G5IZ77_9HYPH)

HSP 1 Score: 73.2 bits (178), Expect = 2.480e-13
Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   73 PNRQRVQVIKGDSMLSLSALIASGHSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDDEVMFPD 321
            PN   + V KG S   L+ ++ASGH S+FD+VYVD SHQA D             VL D IL+FRLLK GG +IFDD + F D
Sbjct:   98 PNPVELVVHKGFSHAQLAKILASGHESSFDMVYVDGSHQAPD-------------VLCDAILSFRLLKTGGLLIFDDYLWFED 167          
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: A0A7T4N0Q6_9BURK (Class I SAM-dependent methyltransferase n=1 Tax=Paraburkholderia ginsengisoli TaxID=311231 RepID=A0A7T4N0Q6_9BURK)

HSP 1 Score: 70.9 bits (172), Expect = 1.870e-12
Identity = 44/93 (47.31%), Postives = 52/93 (55.91%), Query Frame = 1
Query:   37 IQETFRYNI----AKVPNRQRVQVIKGDSMLSLSALIASGHSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDD 303
            ++  F +N+     K P+R RV V KG S   L+ L+A G    FD VYVD SHQA             ADVLAD +L FRLLKVGG I FDD
Sbjct:   82 VEARFHHNVRLAAGKYPDRVRVTVHKGYSDECLARLLADGKKGYFDFVYVDGSHQA-------------ADVLADAVLGFRLLKVGGIIAFDD 161          
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: A0A7Y0XYH9_9CHLB (Class I SAM-dependent methyltransferase n=1 Tax=Chlorobiaceae bacterium TaxID=2067991 RepID=A0A7Y0XYH9_9CHLB)

HSP 1 Score: 68.6 bits (166), Expect = 1.510e-11
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   22 HRFCGI-----QETFRYN----IAKVPNRQRVQVIKGDSMLSLSALIASGHSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDD 303
            H+ CGI     +  F +N    ++KV    R+ + KG S  SL+ALI+  H ++FD+VYVD SHQA D             VLAD +++F+LL+VGG ++FDD
Sbjct:   77 HQDCGIDMAAVESRFLHNTSLALSKVSMSVRLVLHKGYSDYSLAALISQNHGNSFDMVYVDGSHQAPD-------------VLADAVMSFKLLRVGGIMVFDD 166          
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: A0A5B0HBR6_9BURK (Class I SAM-dependent methyltransferase n=6 Tax=Burkholderiaceae TaxID=119060 RepID=A0A5B0HBR6_9BURK)

HSP 1 Score: 67.4 bits (163), Expect = 3.830e-11
Identity = 41/93 (44.09%), Postives = 51/93 (54.84%), Query Frame = 1
Query:   37 IQETFRYNIA----KVPNRQRVQVIKGDSMLSLSALIASGHSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDD 303
            ++  F +N+     K P R ++ V KG S   L+ LIA+G    FD VYVD SHQA             ADVLAD +L F+LLK GG I FDD
Sbjct:   82 VESRFHHNVTLAAGKYPGRAQLTVHKGYSDECLACLIAAGKKGYFDFVYVDGSHQA-------------ADVLADAVLGFKLLKAGGIIAFDD 161          
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: A0A7S4KFR5_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4KFR5_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 5.820e-11
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1
Query:   49 FRYNIAKVPNRQRVQVIKGDSMLSLSALIASG-------HSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDD 303
            F  N+A+ PN  RV+  +G ++ +L  +IA+           AFD++YVDA H A             +DVLAD  LAFRLL+VGG + FDD
Sbjct:   69 FSANVARTPNGGRVRTFRGSTLAALGGMIAAAADGDQAAEGDAFDLIYVDAGHSA-------------SDVLADAALAFRLLRVGGLVFFDD 147          
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: A0A7S2V1H4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1H4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 7.010e-11
Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   49 FRYNIAKVPNRQRVQVIKGDSMLSLSALIASGHSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDD 303
            +  N    PN++++++++GDS+  L+ L+  G +  +DV+YVD  H+              ++VLAD +L+FRLLK+GG +IFDD
Sbjct:   56 YHQNTCSHPNKEKIRILEGDSLSGLAQLV--GENKKYDVIYVDGGHEV-------------SEVLADSVLSFRLLKIGGLMIFDD 125          
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Match: A0A7G8VVU2_9BURK (Class I SAM-dependent methyltransferase n=2 Tax=unclassified Variovorax TaxID=663243 RepID=A0A7G8VVU2_9BURK)

HSP 1 Score: 65.5 bits (158), Expect = 2.040e-10
Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   61 IAKVPNRQRVQVIKGDSMLSLSALIASGHSSAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFDD 303
            I   P+   + V KG S + L+ L+  GH+  FD VYVD SHQA D             VLAD +L FRLL+VGG +IFDD
Sbjct:   94 IRNAPSAVNLVVHKGLSDVCLAQLVGQGHAETFDFVYVDGSHQAPD-------------VLADAVLGFRLLRVGGVMIFDD 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12190.1388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK47_ECTSI9.770e-2342.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FK29_ECTSI7.650e-1939.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQS8_9PHAE1.520e-1839.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1G5IZ77_9HYPH2.480e-1349.40Methyltransferase domain-containing protein n=1 Ta... [more]
A0A7T4N0Q6_9BURK1.870e-1247.31Class I SAM-dependent methyltransferase n=1 Tax=Pa... [more]
A0A7Y0XYH9_9CHLB1.510e-1140.78Class I SAM-dependent methyltransferase n=1 Tax=Ch... [more]
A0A5B0HBR6_9BURK3.830e-1144.09Class I SAM-dependent methyltransferase n=6 Tax=Bu... [more]
A0A7S4KFR5_9EUKA5.820e-1140.22Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2V1H4_9STRA7.010e-1136.47Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7G8VVU2_9BURK2.040e-1045.68Class I SAM-dependent methyltransferase n=2 Tax=un... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12190contigH-paniculata_contig12190:6235..7535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.2
Seed ortholog evalue3e-18
Seed eggNOG ortholog2880.D7FK47
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Methyltransferase domain
EggNOG OGs2DZ7R@1,2S6WK@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size387
Cds size387
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12190.1388.1prot_H-paniculata_contig12190.1388.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12190 6235..7535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928938.205081-CDS-H-paniculata_contig12190:6234..63611622928938.205081-CDS-H-paniculata_contig12190:6234..6361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12190 6235..6361 +
1691480674.1611524-CDS-H-paniculata_contig12190:6234..63611691480674.1611524-CDS-H-paniculata_contig12190:6234..6361Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12190 6235..6361 +
1622928938.2170205-CDS-H-paniculata_contig12190:6827..69281622928938.2170205-CDS-H-paniculata_contig12190:6827..6928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12190 6828..6928 +
1691480674.1807528-CDS-H-paniculata_contig12190:6827..69281691480674.1807528-CDS-H-paniculata_contig12190:6827..6928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12190 6828..6928 +
1622928938.2274406-CDS-H-paniculata_contig12190:7376..75351622928938.2274406-CDS-H-paniculata_contig12190:7376..7535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12190 7377..7535 +
1691480674.1916049-CDS-H-paniculata_contig12190:7376..75351691480674.1916049-CDS-H-paniculata_contig12190:7376..7535Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12190 7377..7535 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12190.1388.1

>prot_H-paniculata_contig12190.1388.1 ID=prot_H-paniculata_contig12190.1388.1|Name=mRNA_H-paniculata_contig12190.1388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
MSTQDTSHRFCGIQETFRYNIAKVPNRQRVQVIKGDSMLSLSALIASGHS
SAFDVVYVDASHQARDLELLMEGLLHLADVLADGILAFRLLKVGGKIIFD
DEVMFPDDVAVATATLERAFAGEMKIVHR
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mRNA from alignment at H-paniculata_contig12190:6235..7535+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12190.1388.1 ID=mRNA_H-paniculata_contig12190.1388.1|Name=mRNA_H-paniculata_contig12190.1388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1301bp|location=Sequence derived from alignment at H-paniculata_contig12190:6235..7535+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAACCCAAGACACATCCCATCGGTTTTGTGGTATACAGGAAACGTT CCGATACAATATAGCCAAGGTTCCAAATAGACAACGGGTGCAGGTGATCA AGGGTGACTCGATGCTGTCTCTTTCAGGTGCGAATAGAGTGGTGAGTCGA GATAGGAAGGAGATAACGTCGGTACGGATGTTAGAACATGTCAACTGAGA TGGATGTCGAAATTAGTTACAGCTGCCGGCGCAGCGTTAGGCAAACGGTC TTCAACAGGATCAGTTCCTTCTCCCCCCTCGCGTTTTCCGACTGACTATA TTCGGTTACGCACTTTCGATTGAATTTCGTGTTCTCTCTCGCGTGTTAAA TTCATGCTGTTGCTCTGTCGCGGGCACTTTGATGACAGAATTGCGCCAAA ATTACTGGATATTGCACCTGTTTTCTACCGCATGTATCGTAATAACTTGA GCTGTGTTGACTCGTTTGAATAGCTAGGAACGCCTCATGTCTTCTCATCT CGACCCTGAACGACGAACATACCCTCACGAACATACCCTCATGAACTCGG TCGTCTGAACGCGGTGTCTTTGTCGGTTCTTCACTTTGTACAGCACTGAT TGCTTCTGGACACAGCTCGGCGTTCGACGTCGTTTATGTGGACGCCTCCC ACCAGGCAAGAGATCTTGAGCTACTGATGGAGGGTCTACTGCATGTTTGG CGCGTCAGTTTTGCAGCGATTCAAAACATCTCGGTCCAAATTTTCCTGGA GACGTTTCGTTAATGTCCACCATTTCCACTTTTTTGCTTCTGATCAACTA TACTTCCTGAAGAACGAATGTACTTCGTTTCCCCGTGACATCATATGCGA CATGCCGAGCTAAAATTCTATGCTCCCTTGATTCCGTGGAGACGATACCA GTCCCACGGCATCATCCATTTCTAAGGTATGGACTTTGGGGGGAACTCTG TTAAACTTGAATATTCCTTTGTTGCCCGGCTAGAAGTTTGAAGCTGATTT TCCCGCCGGCTACATTTTCAGGATAGGTCATTCTCTTCCGCAGAAAGTCA ACGGGAGCTCATACCAGAACAACGTGCCCGATTCCCAATTTACTTCTCCT ATGCGTTGTTCCTTTTGTATCGCACAAACGCACCTGTCGCAGTTGGCGGA TGTGCTCGCCGACGGTATTCTGGCGTTTCGACTGCTCAAAGTAGGCGGGA AAATCATCTTCGACGATGAAGTCATGTTTCCGGACGATGTTGCCGTGGCA ACAGCCACTCTCGAGCGAGCTTTCGCAGGCGAAATGAAGATCGTCCATCG A
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Coding sequence (CDS) from alignment at H-paniculata_contig12190:6235..7535+

>mRNA_H-paniculata_contig12190.1388.1 ID=mRNA_H-paniculata_contig12190.1388.1|Name=mRNA_H-paniculata_contig12190.1388.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig12190:6235..7535+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAACCCAAGACACATCCCATCGGTTTTGTGGTATACAGGAAACGTT
CCGATACAATATAGCCAAGGTTCCAAATAGACAACGGGTGCAGGTGATCA
AGGGTGACTCGATGCTGTCTCTTTCAGATGTCAACCCAAGACACATCCCA
TCGGTTTTGTGGTATACAGGAAACGTTCCGATACAATATAGCCAAGGTTC
CAAATAGACAACGGGTGCAGGTGATCAAGGGTGACTCGATGCTGTCTCTT
TCAGCACTGATTGCTTCTGGACACAGCTCGGCGTTCGACGTCGTTTATGT
GGACGCCTCCCACCAGGCAAGAGATCTTGAGCTACTGATGGAGGGTCTAC
TGCATCACTGATTGCTTCTGGACACAGCTCGGCGTTCGACGTCGTTTATG
TGGACGCCTCCCACCAGGCAAGAGATCTTGAGCTACTGATGGAGGGTCTA
CTGCATTTGGCGGATGTGCTCGCCGACGGTATTCTGGCGTTTCGACTGCT
CAAAGTAGGCGGGAAAATCATCTTCGACGATGAAGTCATGTTTCCGGACG
ATGTTGCCGTGGCAACAGCCACTCTCGAGCGAGCTTTCGCAGGCGAAATG
AAGATCGTCCATCGATTGGCGGATGTGCTCGCCGACGGTATTCTGGCGTT
TCGACTGCTCAAAGTAGGCGGGAAAATCATCTTCGACGATGAAGTCATGT
TTCCGGACGATGTTGCCGTGGCAACAGCCACTCTCGAGCGAGCTTTCGCA
GGCGAAATGAAGATCGTCCATCGA
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