mRNA_H-paniculata_contig6161.13880.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6161.13880.1
Unique NamemRNA_H-paniculata_contig6161.13880.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6161.13880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6161contigH-paniculata_contig6161:11402..11887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6161.13880.1prot_H-paniculata_contig6161.13880.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6161 11427..11837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930695.3541725-UTR-H-paniculata_contig6161:11401..114261622930695.3541725-UTR-H-paniculata_contig6161:11401..11426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6161 11402..11426 +
1691481410.0548365-UTR-H-paniculata_contig6161:11401..114261691481410.0548365-UTR-H-paniculata_contig6161:11401..11426Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6161 11402..11426 +
1622930695.3929577-UTR-H-paniculata_contig6161:11837..118871622930695.3929577-UTR-H-paniculata_contig6161:11837..11887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6161 11838..11887 +
1691481410.0747194-UTR-H-paniculata_contig6161:11837..118871691481410.0747194-UTR-H-paniculata_contig6161:11837..11887Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6161 11838..11887 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930695.3751376-CDS-H-paniculata_contig6161:11426..118371622930695.3751376-CDS-H-paniculata_contig6161:11426..11837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6161 11427..11837 +
1691481410.0655441-CDS-H-paniculata_contig6161:11426..118371691481410.0655441-CDS-H-paniculata_contig6161:11426..11837Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6161 11427..11837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6161.13880.1

>prot_H-paniculata_contig6161.13880.1 ID=prot_H-paniculata_contig6161.13880.1|Name=mRNA_H-paniculata_contig6161.13880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MHHPNHFDMKTLRCCSALYPHDEGLMENHSLPIPLTPQNAIITTAAALKL
VIDCQTGGCQLLPGEIQGTDRASSLPHGPDGSSRTRSYRFQNEGKGNGQE
RVYPVPFGQSRVQQIPGHIRHVYEGAQMIRISSISR*
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mRNA from alignment at H-paniculata_contig6161:11402..11887+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6161.13880.1 ID=mRNA_H-paniculata_contig6161.13880.1|Name=mRNA_H-paniculata_contig6161.13880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig6161:11402..11887+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTATTTGAACCCTCCTCCATTAGCATGCACCACCCTAACCATTTTGACA
TGAAGACGTTGCGCTGTTGTAGCGCGTTATACCCCCATGATGAGGGGTTA
ATGGAAAATCACTCACTCCCAATTCCCCTGACGCCGCAAAACGCAATCAT
CACGACTGCAGCAGCTTTGAAACTCGTGATTGACTGCCAGACAGGAGGTT
GTCAGCTGCTACCTGGCGAAATCCAAGGGACTGATCGGGCAAGCAGTCTC
CCTCATGGTCCCGATGGTTCTAGCAGAACGAGGAGTTACCGTTTCCAGAA
TGAAGGAAAGGGAAATGGACAGGAAAGGGTATACCCTGTTCCTTTCGGAC
AATCGAGGGTACAACAAATACCTGGTCACATTAGACATGTGTACGAGGGC
GCTCAAATGATCAGAATTTCGTCAATTTCGCGCTGAAAATCAACTTGCGC
TTGTCTCCAAAATGTCCGTAAACAATTGTTTGAAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig6161:11402..11887+

>mRNA_H-paniculata_contig6161.13880.1 ID=mRNA_H-paniculata_contig6161.13880.1|Name=mRNA_H-paniculata_contig6161.13880.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig6161:11402..11887+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACCACCCTAACCATTTTGACATGAAGACGTTGCGCTGTTGTAGCGC
GTTATACCCCCATGATGAGGGGTTAATGGAAAATCACTCACTCCCAATTC
CCCTGACGCCGCAAAACGCAATCATCACGACTGCAGCAGCTTTGAAACTC
GTGATTGACTGCCAGACAGGAGGTTGTCAGCTGCTACCTGGCGAAATCCA
AGGGACTGATCGGGCAAGCAGTCTCCCTCATGGTCCCGATGGTTCTAGCA
GAACGAGGAGTTACCGTTTCCAGAATGAAGGAAAGGGAAATGGACAGGAA
AGGGTATACCCTGTTCCTTTCGGACAATCGAGGGTACAACAAATACCTGG
TCACATTAGACATGTGTACGAGGGCGCTCAAATGATCAGAATTTCGTCAA
TTTCGCGCTGAATGCACCACCCTAACCATTTTGACATGAAGACGTTGCGC
TGTTGTAGCGCGTTATACCCCCATGATGAGGGGTTAATGGAAAATCACTC
ACTCCCAATTCCCCTGACGCCGCAAAACGCAATCATCACGACTGCAGCAG
CTTTGAAACTCGTGATTGACTGCCAGACAGGAGGTTGTCAGCTGCTACCT
GGCGAAATCCAAGGGACTGATCGGGCAAGCAGTCTCCCTCATGGTCCCGA
TGGTTCTAGCAGAACGAGGAGTTACCGTTTCCAGAATGAAGGAAAGGGAA
ATGGACAGGAAAGGGTATACCCTGTTCCTTTCGGACAATCGAGGGTACAA
CAAATACCTGGTCACATTAGACATGTGTACGAGGGCGCTCAAATGATCAG
AATTTCGTCAATTTCGCGCTGA
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